Clone BS06645 Report

Search the DGRC for BS06645

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptsina-RA
Protein status:BS06645.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06645.3prime Sequence

831 bp (818 high quality bases) assembled on 2005-12-04

> BS06645.3prime
ATGGTCTAGAAAGCTTTTAGACCAGAGATATGGTCACGTTAATGCCCAGG
TTGCCATTGTCGGCGAACAATTGCGCAATCGACGTGTCGAACACCAGGCA
GTCCGAGTTGTGAATTGCGGAAGCGACGCCCTCGTGGATCGAACGCGGCA
TTGCCTCCCAGGTGAGCCGGCGTCGGTTTCCGTTCAACTCCAGGCGATAG
ACAAAGTTCTCCGCTTCCTTGCGCGACCCGATCAGCTGAACGATGGCAAA
GAACTGCTGGTGTCCGTCGTACTTCTCCTGCTTCTCCAGCACGAGCATAA
AATGGTGGCCGAAGCAGGACTGCATCATTACCCAATCGACGGCGCCGGGC
AGGTTGATGTCGGTGGCCAGGAACACGATGTCCTCGCCCTGCAGCGTTGT
GATGCTCTTGTGCGACATCATCAGATGCTGCATGACTAGGTCAAGCGGGC
CCTGCCACTTACAGCTGGCGCCCGGGCACGGACACAGGTAGGGCCGGCAC
TCGCACGTCTCCTCGTGTTCTGTCTTTTCCGTGTAAACCAGCGAGGCGGT
GCATCCGTAGCCGGAGTGCTTGCACGGGAACTTGACGTTCGAGGCAACCT
TCTCCATCGCCAGGTTGCGGATATTCGCCAGCGGACCGCGGCAGGTGGGG
CAGCAGGTGAGCTTGGAGCGACAGGACACGCACACCAGGTGCCCGCTGGA
GCACTGCAGGATCGGCGGTAGCACATAGTCAAAGCACACGGGGCATTCAA
ACAGCGAGGTCAAGTCGGCGGACATGCCCGCATCACCGCCACCGGCGGAC
GACAGCGAGGAGCTGGACGACGAGGATGTGT

BS06645.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9949-PA 945 sina-RA 131..945 831..17 4075 100 Minus
CG9949-PB 945 sina-RB 131..945 831..17 4075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
sina-RC 3124 CG9949-RC 960..1775 831..16 4080 100 Minus
sina-RB 2482 CG9949-RB 318..1133 831..16 4080 100 Minus
sina-RA 3191 CG9949-RA 1027..1842 831..16 4080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16856548..16857363 831..16 4080 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:04:53 has no hits.

BS06645.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:47 Download gff for BS06645.3prime
Subject Subject Range Query Range Percent Splice Strand
sina-PB 131..945 17..831 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:08 Download gff for BS06645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9949-PB 131..945 17..831 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:47:58 Download gff for BS06645.3prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 1027..1845 13..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:44 Download gff for BS06645.3prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 1027..1845 13..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:44 Download gff for BS06645.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16856548..16857366 13..831 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:47:58 Download gff for BS06645.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16849648..16850466 13..831 99   Minus

BS06645.5prime Sequence

858 bp (766 high quality bases) assembled on 2005-12-04

> BS06645.5prime
GAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAAC
CGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACG
AGCACCTCGACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACAC
ATCCTCGTCGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGG
GCATGTCCGCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGAC
TATGTGCTACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGT
GTCCTGTCGCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGG
CGAATATCCGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTC
CCGTGCAAGCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGA
AAAGACAGAACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGT
GCCCGGGCGCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAG
CATCTGATGATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACAT
CGTGTTCCTGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAA
TGATGCAGTCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAG
GAGAAGTACGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGG
GTCGCGCAAGGAAGCGGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAA
ACCGACGCCGGCTCACCTGGGAGGCAATGCCGCGTTCGATCCACGAGGGC
GTCGCTTC

BS06645.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9949-PB 945 sina-RB 1..842 17..858 4210 100 Plus
CG9949-PA 945 sina-RA 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
sina-RC 3124 CG9949-RC 830..1671 17..858 4210 100 Plus
sina-RB 2482 CG9949-RB 188..1029 17..858 4210 100 Plus
sina-RA 3191 CG9949-RA 897..1738 17..858 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16856418..16857259 17..858 4210 100 Plus
Blast to na_te.dros performed 2015-02-12 19:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 613..728 129..16 133 63 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 973..1033 49..106 126 72.1 Plus

BS06645.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:48 Download gff for BS06645.5prime
Subject Subject Range Query Range Percent Splice Strand
sina-PB 1..842 17..858 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:09 Download gff for BS06645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9949-PB 1..842 17..858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:28 Download gff for BS06645.5prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 893..1738 12..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:08:18 Download gff for BS06645.5prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 893..1738 12..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:08:18 Download gff for BS06645.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16856414..16857259 12..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:28 Download gff for BS06645.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16849514..16850359 12..858 99   Plus

BS06645.complete Sequence

977 bp (977 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635576

> BS06645.complete
GAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAAC
CGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACG
AGCACCTCGACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACAC
ATCCTCGTCGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGG
GCATGTCCGCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGAC
TATGTGCTACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGT
GTCCTGTCGCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGG
CGAATATCCGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTC
CCGTGCAAGCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGA
AAAGACAGAACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGT
GCCCGGGCGCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAG
CATCTGATGATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACAT
CGTGTTCCTGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAA
TGATGCAGTCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAG
GAGAAGTACGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGG
GTCGCGCAAGGAAGCGGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAA
ACCGACGCCGGCTCACCTGGGAGGCAATGCCGCGTTCGATCCACGAGGGC
GTCGCTTCCGCAATTCACAACTCGGACTGCCTGGTGTTCGACACGTCGAT
TGCGCAATTGTTCGCCGACAATGGCAACCTGGGCATTAACGTGACCATAT
CTCTGGTCTAAAAGCTTTCTAGACCAT

BS06645.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
sina-RC 945 CG9949-PC 1..945 17..961 4725 100 Plus
sina-RB 945 CG9949-PB 1..945 17..961 4725 100 Plus
sina-RA 945 CG9949-PA 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
sina-RC 3124 CG9949-RC 830..1775 17..962 4730 100 Plus
sina-RB 2482 CG9949-RB 188..1133 17..962 4730 100 Plus
sina-RA 3191 CG9949-RA 897..1842 17..962 4730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16856418..16857363 17..962 4730 100 Plus
Blast to na_te.dros performed 2014-11-28 00:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 613..728 129..16 133 63 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 973..1033 49..106 126 72.1 Plus

BS06645.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:27 Download gff for BS06645.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RB 1..945 17..961 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:21 Download gff for BS06645.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RB 184..1136 12..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:34 Download gff for BS06645.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RA 897..1839 17..959 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:27 Download gff for BS06645.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RB 184..1136 12..965 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:37 Download gff for BS06645.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RA 897..1839 17..959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:37 Download gff for BS06645.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16856418..16857360 17..959 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:34 Download gff for BS06645.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16849518..16850460 17..959 100   Plus

BS06645.pep Sequence

Translation from 16 to 960

> BS06645.pep
MSNKINPKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSS
SSLSSAGGGDAGMSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSK
LTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHE
ETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLAT
DINLPGAVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEA
ENFVYRLELNGNRRRLTWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFA
DNGNLGINVTISLV*

BS06645.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
sina-PC 314 CG9949-PC 1..314 1..314 1667 100 Plus
sina-PB 314 CG9949-PB 1..314 1..314 1667 100 Plus
sina-PA 314 CG9949-PA 1..314 1..314 1667 100 Plus
sinah-PC 351 CG13030-PC 55..346 8..314 766 47.9 Plus
CG2681-PA 626 CG2681-PA 123..319 1..184 199 28.4 Plus