Clone Sequence Records
BS06645.3prime Sequence
831 bp (818 high quality bases) assembled on 2005-12-04
> BS06645.3prime
ATGGTCTAGAAAGCTTTTAGACCAGAGATATGGTCACGTTAATGCCCAGG
TTGCCATTGTCGGCGAACAATTGCGCAATCGACGTGTCGAACACCAGGCA
GTCCGAGTTGTGAATTGCGGAAGCGACGCCCTCGTGGATCGAACGCGGCA
TTGCCTCCCAGGTGAGCCGGCGTCGGTTTCCGTTCAACTCCAGGCGATAG
ACAAAGTTCTCCGCTTCCTTGCGCGACCCGATCAGCTGAACGATGGCAAA
GAACTGCTGGTGTCCGTCGTACTTCTCCTGCTTCTCCAGCACGAGCATAA
AATGGTGGCCGAAGCAGGACTGCATCATTACCCAATCGACGGCGCCGGGC
AGGTTGATGTCGGTGGCCAGGAACACGATGTCCTCGCCCTGCAGCGTTGT
GATGCTCTTGTGCGACATCATCAGATGCTGCATGACTAGGTCAAGCGGGC
CCTGCCACTTACAGCTGGCGCCCGGGCACGGACACAGGTAGGGCCGGCAC
TCGCACGTCTCCTCGTGTTCTGTCTTTTCCGTGTAAACCAGCGAGGCGGT
GCATCCGTAGCCGGAGTGCTTGCACGGGAACTTGACGTTCGAGGCAACCT
TCTCCATCGCCAGGTTGCGGATATTCGCCAGCGGACCGCGGCAGGTGGGG
CAGCAGGTGAGCTTGGAGCGACAGGACACGCACACCAGGTGCCCGCTGGA
GCACTGCAGGATCGGCGGTAGCACATAGTCAAAGCACACGGGGCATTCAA
ACAGCGAGGTCAAGTCGGCGGACATGCCCGCATCACCGCCACCGGCGGAC
GACAGCGAGGAGCTGGACGACGAGGATGTGT
BS06645.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9949-PA | 945 | sina-RA | 131..945 | 831..17 | 4075 | 100 | Minus |
CG9949-PB | 945 | sina-RB | 131..945 | 831..17 | 4075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-RC | 3124 | CG9949-RC | 960..1775 | 831..16 | 4080 | 100 | Minus |
sina-RB | 2482 | CG9949-RB | 318..1133 | 831..16 | 4080 | 100 | Minus |
sina-RA | 3191 | CG9949-RA | 1027..1842 | 831..16 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16856548..16857363 | 831..16 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:04:53 has no hits.
BS06645.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:47 Download gff for
BS06645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-PB | 131..945 | 17..831 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:08 Download gff for
BS06645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9949-PB | 131..945 | 17..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:47:58 Download gff for
BS06645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 1027..1845 | 13..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:44 Download gff for
BS06645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 1027..1845 | 13..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:44 Download gff for
BS06645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16856548..16857366 | 13..831 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:47:58 Download gff for
BS06645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16849648..16850466 | 13..831 | 99 | | Minus |
BS06645.5prime Sequence
858 bp (766 high quality bases) assembled on 2005-12-04
> BS06645.5prime
GAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAAC
CGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACG
AGCACCTCGACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACAC
ATCCTCGTCGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGG
GCATGTCCGCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGAC
TATGTGCTACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGT
GTCCTGTCGCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGG
CGAATATCCGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTC
CCGTGCAAGCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGA
AAAGACAGAACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGT
GCCCGGGCGCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAG
CATCTGATGATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACAT
CGTGTTCCTGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAA
TGATGCAGTCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAG
GAGAAGTACGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGG
GTCGCGCAAGGAAGCGGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAA
ACCGACGCCGGCTCACCTGGGAGGCAATGCCGCGTTCGATCCACGAGGGC
GTCGCTTC
BS06645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9949-PB | 945 | sina-RB | 1..842 | 17..858 | 4210 | 100 | Plus |
CG9949-PA | 945 | sina-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-RC | 3124 | CG9949-RC | 830..1671 | 17..858 | 4210 | 100 | Plus |
sina-RB | 2482 | CG9949-RB | 188..1029 | 17..858 | 4210 | 100 | Plus |
sina-RA | 3191 | CG9949-RA | 897..1738 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16856418..16857259 | 17..858 | 4210 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 613..728 | 129..16 | 133 | 63 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 49..106 | 126 | 72.1 | Plus |
BS06645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:48 Download gff for
BS06645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-PB | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:09 Download gff for
BS06645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9949-PB | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:28 Download gff for
BS06645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 893..1738 | 12..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:08:18 Download gff for
BS06645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 893..1738 | 12..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:08:18 Download gff for
BS06645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16856414..16857259 | 12..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:28 Download gff for
BS06645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16849514..16850359 | 12..858 | 99 | | Plus |
BS06645.complete Sequence
977 bp (977 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635576
> BS06645.complete
GAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAAC
CGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACG
AGCACCTCGACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACAC
ATCCTCGTCGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGG
GCATGTCCGCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGAC
TATGTGCTACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGT
GTCCTGTCGCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGG
CGAATATCCGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTC
CCGTGCAAGCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGA
AAAGACAGAACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGT
GCCCGGGCGCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAG
CATCTGATGATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACAT
CGTGTTCCTGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAA
TGATGCAGTCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAG
GAGAAGTACGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGG
GTCGCGCAAGGAAGCGGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAA
ACCGACGCCGGCTCACCTGGGAGGCAATGCCGCGTTCGATCCACGAGGGC
GTCGCTTCCGCAATTCACAACTCGGACTGCCTGGTGTTCGACACGTCGAT
TGCGCAATTGTTCGCCGACAATGGCAACCTGGGCATTAACGTGACCATAT
CTCTGGTCTAAAAGCTTTCTAGACCAT
BS06645.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-RC | 945 | CG9949-PC | 1..945 | 17..961 | 4725 | 100 | Plus |
sina-RB | 945 | CG9949-PB | 1..945 | 17..961 | 4725 | 100 | Plus |
sina-RA | 945 | CG9949-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-RC | 3124 | CG9949-RC | 830..1775 | 17..962 | 4730 | 100 | Plus |
sina-RB | 2482 | CG9949-RB | 188..1133 | 17..962 | 4730 | 100 | Plus |
sina-RA | 3191 | CG9949-RA | 897..1842 | 17..962 | 4730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16856418..16857363 | 17..962 | 4730 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 613..728 | 129..16 | 133 | 63 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 49..106 | 126 | 72.1 | Plus |
BS06645.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:27 Download gff for
BS06645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RB | 1..945 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:21 Download gff for
BS06645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RB | 184..1136 | 12..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:34 Download gff for
BS06645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 897..1839 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:27 Download gff for
BS06645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RB | 184..1136 | 12..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:37 Download gff for
BS06645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 897..1839 | 17..959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:37 Download gff for
BS06645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16856418..16857360 | 17..959 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:34 Download gff for
BS06645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16849518..16850460 | 17..959 | 100 | | Plus |
BS06645.pep Sequence
Translation from 16 to 960
> BS06645.pep
MSNKINPKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSS
SSLSSAGGGDAGMSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSK
LTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHE
ETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLAT
DINLPGAVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEA
ENFVYRLELNGNRRRLTWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFA
DNGNLGINVTISLV*
BS06645.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-PC | 314 | CG9949-PC | 1..314 | 1..314 | 1667 | 100 | Plus |
sina-PB | 314 | CG9949-PB | 1..314 | 1..314 | 1667 | 100 | Plus |
sina-PA | 314 | CG9949-PA | 1..314 | 1..314 | 1667 | 100 | Plus |
sinah-PC | 351 | CG13030-PC | 55..346 | 8..314 | 766 | 47.9 | Plus |
CG2681-PA | 626 | CG2681-PA | 123..319 | 1..184 | 199 | 28.4 | Plus |