Clone Sequence Records
BS06648.3prime Sequence
906 bp (845 high quality bases) assembled on 2005-12-04
> BS06648.3prime
ATGGTCTAGAAAGCTTTTACTGGGTCTTCAATTTACTCGCCTCCGCACGA
TTTTTTCGGATTTTACTTATAAGCGAAACGAAGACCCTTTGTAAGCATTT
AATCAAAATAACGACGATCAGTAGGGAGACAAAAGTGATTGCGATGAGGA
GCCCCCAGGTGTCCAGTCCGTGGAACTGAATAAAATCCAGATCACGCGAA
GCACATCTCAAGTGTTTGGCTCCCTTATGCCGCAATACGTACTCGGTCCA
CCAAATGGCGCGCTCCAAAGCGGTTTCCTTCTGATCTCGGAATAATTTGG
ATTTAGTCTGAGCTGCTGCCGCATAACTGGGATTACTCAGCAATTCCTGG
ATCAAAGGCGTCAGTTCTGTCGCATTGACACTCCATATATCAGCACTGAG
ACCATAGCCTACCTGCTTGGCCCTCTGAACATTCAAGTGCTGATCATAGA
AAATGGGCAATCCAAGTATGGGCTTTCCAAAGTATATACTCTCGATGGTG
CTCAATAGACCTCCGTGGGTGATGAAGAGCTTAACATTCGGATGAGCGAG
AATATCGGGTTGGGGGAACCACTTGCTGATGAAGACATTATCGGGTTTTT
CGGGCAACTGATCATCCTCGAATTTCCACAGCACACGTTGTGGCACACTG
GCAAAGGTTTGCATTAGCATTTTTCGTGTGGATGGCGGCAAGTCTTTGCT
TTTGATATTGGAACCCATGGAGAAATAGATTACTCCCTTCTCCGATTGCT
CGACAAATTCCGACAGTTCCTTTGCTAAGGGCTGAACCTTTCGCTTCTGT
TGTAAATGCAGTCCGCCCACCTCGATCATATTGGGCAAATAGGGGCGTGG
ATAGCTCAGGGAAAAGTGCTGGCCGAGAAGCATTAGCGCAAAGCTGTCCA
AAACTT
BS06648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6644-PA | 1614 | Ugt35a-RA | 725..1614 | 906..17 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ugt35a-RA | 1781 | CG6644-RA | 765..1654 | 906..17 | 4450 | 100 | Minus |
Ugt86Dd-RB | 1671 | CG6633-RB | 972..1191 | 634..415 | 395 | 78.6 | Minus |
Ugt35b-RA | 1672 | CG6649-RA | 977..1148 | 660..489 | 335 | 79.7 | Minus |
Ugt86Dd-RB | 1671 | CG6633-RB | 712..805 | 900..807 | 200 | 80.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11170944..11171833 | 17..906 | 4450 | 100 | Plus |
3R | 32079331 | 3R | 11127077..11127296 | 415..634 | 395 | 78.6 | Plus |
3R | 32079331 | 3R | 11169027..11169198 | 489..660 | 335 | 79.7 | Plus |
3R | 32079331 | 3R | 31394055..31394228 | 455..628 | 270 | 77 | Plus |
3R | 32079331 | 3R | 11164850..11165060 | 447..657 | 245 | 74.4 | Plus |
3R | 32079331 | 3R | 11127463..11127556 | 807..900 | 200 | 80.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:07:40 has no hits.
BS06648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:51 Download gff for
BS06648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6644-PA | 725..1614 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:14 Download gff for
BS06648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6644-PA | 725..1614 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:13:40 Download gff for
BS06648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ugt35a-RA | 765..1654 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:44 Download gff for
BS06648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ugt35a-RA | 765..1654 | 17..906 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:44 Download gff for
BS06648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11170944..11171833 | 17..906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:13:40 Download gff for
BS06648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6996666..6997555 | 17..906 | 100 | | Plus |
BS06648.5prime Sequence
924 bp (822 high quality bases) assembled on 2005-12-04
> BS06648.5prime
GAAGTTATCAGTCGACATGGGTGGAATATTTTCTGTAACTGGTCTTGGCA
TTCTGCTAATTGGCCTGATATGGCTGTTCGCCGCAAATGCCGATGAAGGG
GTTCAAAGTTCGCGCATATTGGCCGTGTTTCCTTTTCCCGGCCGATCGCA
GTACATTTTCGCTGAGCAGTTTATGAAGGAACTGGCCCATCGGGGTCACA
ATGTCACCGTAATCAATACCTTTGGTAGCGATAAAAACGAGCCCAACTTT
CGGGTGATTGGTGCTAAAAAAATTCACGAAATAATGGCGGCATTTGGAAA
TGCAGATTACACCCAAACGGCGAGTCAATGGCAAATGTTGACTATGACCA
CACAGTTTCTCAATCTTTTGACCACAAGTATCCTGGATGATGCGGCTGTA
AAGGATTTACTGAACAGCGGCGAGAAATTCGATTTGGTTATAATGGAAGC
GGTGCAAACCGAAGCCCTCTTCGGTTTGATCCAGCATTTTGGAGCAGAAA
CCATAGGTATCTCATCGTACGGCACAGATACACACATCGATGAGTTAATG
GGCAACATATCGCCATTGTCCTACAATCCCTTGCTACTCTCATCGCGAAC
GGAGCAAATGGATTTCAAGGATCGTGTGATGAATGTGTTTGAAGCCTCGG
TAATGTGGCTGCACAAGAGGATTGTCCACCTGCCGTCTCAACGGGATCTG
TATGCGAAATACTTTCCCACGGCCAGGAAATCATTGGATGAAGTTTTGGA
CAGCTTTGCGCTAATGCTTCTCGGCCAGCACTTTTCCCTGAGCTATCCAC
GCCCCTATTTGCCCAATATGATCGAGGTGGGCGGACTGCATTTACAACAG
AAGCGAAAGGTTCACCCCTTAGCAAAGGAACTGTCGGAATTTGTCGAGCA
ATCGGAGAAGGGAGTAATCTATTT
BS06648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6644-PA | 1614 | Ugt35a-RA | 1..908 | 17..924 | 4515 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ugt35a-RA | 1781 | CG6644-RA | 41..948 | 17..924 | 4525 | 99.9 | Plus |
Ugt86Dd-RB | 1671 | CG6633-RB | 700..805 | 735..840 | 215 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11171650..11172284 | 924..290 | 3160 | 99.8 | Minus |
3R | 32079331 | 3R | 11172351..11172624 | 290..17 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 11127463..11127568 | 840..735 | 215 | 80.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:28:32 has no hits.
BS06648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:47:52 Download gff for
BS06648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6644-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:15 Download gff for
BS06648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6644-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:11:21 Download gff for
BS06648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ugt35a-RA | 41..948 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:15 Download gff for
BS06648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ugt35a-RA | 41..948 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:15 Download gff for
BS06648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11171650..11172283 | 291..924 | 99 | <- | Minus |
3R | 11172351..11172624 | 17..290 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:11:21 Download gff for
BS06648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6997372..6998005 | 291..924 | 99 | <- | Minus |
arm_3R | 6998073..6998346 | 17..290 | 100 | | Minus |
BS06648.complete Sequence
1646 bp (1646 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635577
> BS06648.complete
GAAGTTATCAGTCGACATGGGTGGAATATTTTCTGTAACTGGTCTTGGCA
TTCTGCTAATTGGCCTGATATGGCTGTTCGCCGCAAATGCCGATGAAGGG
GTTCAAAGTTCGCGCATATTGGCCGTGTTTCCTTTTCCCGGCCGATCGCA
GTACATTTTCGCTGAGCAGTTTATGAAGGAACTGGCCCATCGGGGTCACA
ATGTCACCGTAATCAATACCTTTGGTAGCGATAAAAACGAGCCCAACTTT
CGGGTGATTGGTGCTAAAAAAATTCACGAAATAATGGCGGCATTTGGAAA
TGCAGATTACACCCAAACGGCGAGTCAATGGCAAATGTTGACTATGACCA
CACAGTTTCTCAATCTTTTGACCACAAGTATCCTGGATGATGCGGCTGTA
AAGGATTTACTGAACAGCGGCGAGAAATTCGATTTGGTTATAATGGAAGC
GGTGCAAACCGAAGCCCTCTTCGGTTTGATCCAGCATTTTGGAGCAGAAA
CCATAGGTATCTCATCGTACGGCACAGATACACACATCGATGAGTTAATG
GGCAACATATCGCCATTGTCCTACAATCCCTTGCTACTCTCATCGCGAAC
GGAGCAAATGGATTTCAAGGATCGTGTGATGAATGTGTTTGAAGCCTCGG
TAATGTGGCTGCACAAGAGGATTGTCCACCTGCCGTCTCAACGGGATCTG
TATGCGAAATACTTTCCCACGGCCAGGAAATCATTGGATGAAGTTTTGGA
CAGCTTTGCGCTAATGCTTCTCGGCCAGCACTTTTCCCTGAGCTATCCAC
GCCCCTATTTGCCCAATATGATCGAGGTGGGCGGACTGCATTTACAACAG
AAGCGAAAGGTTCAGCCCTTAGCAAAGGAACTGTCGGAATTTGTCGAGCA
ATCGGAGAAGGGAGTAATCTATTTCTCCATGGGTTCCAATATCAAAAGCA
AAGACTTGCCGCCATCCACACGAAAAATGCTAATGCAAACCTTTGCCAGT
GTGCCACAACGTGTGCTGTGGAAATTCGAGGATGATCAGTTGCCCGAAAA
ACCCGATAATGTCTTCATCAGCAAGTGGTTCCCCCAACCCGATATTCTCG
CTCATCCGAATGTTAAGCTCTTCATCACCCACGGAGGTCTATTGAGCACC
ATCGAGAGTATATACTTTGGAAAGCCCATACTTGGATTGCCCATTTTCTA
TGATCAGCACTTGAATGTTCAGAGGGCCAAGCAGGTAGGCTATGGTCTCA
GTGCTGATATATGGAGTGTCAATGCGACAGAACTGACGCCTTTGATCCAG
GAATTGCTGAGTAATCCCAGTTATGCGGCAGCAGCTCAGACTAAATCCAA
ATTATTCCGAGATCAGAAGGAAACCGCTTTGGAGCGCGCCATTTGGTGGA
CCGAGTACGTATTGCGGCATAAGGGAGCCAAACACTTGAGATGTGCTTCG
CGTGATCTGGATTTTATTCAGTTCCACGGACTGGACACCTGGGGGCTCCT
CATCGCAATCACTTTTGTCTCCCTACTGATCGTCGTTATTTTGATTAAAT
GCTTACAAAGGGTCTTCGTTTCGCTTATAAGTAAAATCCGAAAAAATCGT
GCGGAGGCGAGTAAATTGAAGACCCAGTAAAAGCTTTCTAGACCAT
BS06648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ugt35a-RA | 1614 | CG6644-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Ugt86Dd-RB | 1553 | CG6633-PB | 957..1176 | 1013..1232 | 395 | 78.6 | Plus |
Ugt35b-RA | 1551 | CG6649-PA | 941..1112 | 987..1158 | 335 | 79.7 | Plus |
Ugt86Dd-RB | 1553 | CG6633-PB | 685..790 | 735..840 | 215 | 80.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ugt35a-RA | 1781 | CG6644-RA | 41..1654 | 17..1630 | 8070 | 100 | Plus |
Ugt86Dd-RB | 1671 | CG6633-RB | 972..1191 | 1013..1232 | 395 | 78.6 | Plus |
Ugt35b-RA | 1672 | CG6649-RA | 977..1148 | 987..1158 | 335 | 79.7 | Plus |
Ugt86Dd-RB | 1671 | CG6633-RB | 700..805 | 735..840 | 215 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11170944..11172284 | 1630..290 | 6705 | 100 | Minus |
3R | 32079331 | 3R | 11172351..11172624 | 290..17 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 11127077..11127296 | 1232..1013 | 395 | 78.6 | Minus |
3R | 32079331 | 3R | 11169027..11169198 | 1158..987 | 335 | 79.7 | Minus |
3R | 32079331 | 3R | 31394055..31394228 | 1192..1019 | 270 | 77 | Minus |
3R | 32079331 | 3R | 11164850..11165060 | 1200..990 | 245 | 74.4 | Minus |
3R | 32079331 | 3R | 11127463..11127568 | 840..735 | 215 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:40:16 has no hits.
BS06648.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:14 Download gff for
BS06648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ugt35a-RA | 1..1614 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:06 Download gff for
BS06648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ugt35a-RA | 41..1654 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:15 Download gff for
BS06648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ugt35a-RA | 41..1652 | 17..1628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:14 Download gff for
BS06648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ugt35a-RA | 41..1654 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:00 Download gff for
BS06648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ugt35a-RA | 41..1652 | 17..1628 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:00 Download gff for
BS06648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11170946..11172283 | 291..1628 | 100 | <- | Minus |
3R | 11172351..11172624 | 17..290 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:15 Download gff for
BS06648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6996668..6998005 | 291..1628 | 100 | <- | Minus |
arm_3R | 6998073..6998346 | 17..290 | 100 | | Minus |
BS06648.pep Sequence
Translation from 16 to 1629
> BS06648.pep
MGGIFSVTGLGILLIGLIWLFAANADEGVQSSRILAVFPFPGRSQYIFAE
QFMKELAHRGHNVTVINTFGSDKNEPNFRVIGAKKIHEIMAAFGNADYTQ
TASQWQMLTMTTQFLNLLTTSILDDAAVKDLLNSGEKFDLVIMEAVQTEA
LFGLIQHFGAETIGISSYGTDTHIDELMGNISPLSYNPLLLSSRTEQMDF
KDRVMNVFEASVMWLHKRIVHLPSQRDLYAKYFPTARKSLDEVLDSFALM
LLGQHFSLSYPRPYLPNMIEVGGLHLQQKRKVQPLAKELSEFVEQSEKGV
IYFSMGSNIKSKDLPPSTRKMLMQTFASVPQRVLWKFEDDQLPEKPDNVF
ISKWFPQPDILAHPNVKLFITHGGLLSTIESIYFGKPILGLPIFYDQHLN
VQRAKQVGYGLSADIWSVNATELTPLIQELLSNPSYAAAAQTKSKLFRDQ
KETALERAIWWTEYVLRHKGAKHLRCASRDLDFIQFHGLDTWGLLIAITF
VSLLIVVILIKCLQRVFVSLISKIRKNRAEASKLKTQ*
BS06648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ugt35a-PA | 537 | CG6644-PA | 1..537 | 1..537 | 2760 | 100 | Plus |
Ugt86Dd-PB | 517 | CG6633-PB | 22..496 | 30..509 | 1422 | 56.2 | Plus |
Ugt35b-PA | 516 | CG6649-PA | 17..503 | 29..516 | 1250 | 51.5 | Plus |
CG31002-PA | 521 | CG31002-PA | 16..506 | 30..513 | 1052 | 44.6 | Plus |
Ugt86Da-PA | 528 | CG18578-PA | 22..526 | 29..530 | 1013 | 43 | Plus |