Clone Sequence Records
BS06652.3prime Sequence
888 bp (868 high quality bases) assembled on 2005-12-04
> BS06652.3prime
ATGGTCTAGAAAGCTTTCACATGCAGCGCAGTCGCACCAGCGGCACCACG
TTGCCGTCCTTATCGTCCACATCTACCTCAACCTCTAGCTGGTAAAGCCC
ATCCTCCGGTATCGTGCTGTCGGGCAGACGGGCCAGGATCTCGCTCTCCC
CGGTGCGCAGCTTAAACGAAGCAGCTGCTTTGCTTACGTCGTCACCCTTT
CCCTCCTCTGATTGGGGCAGTGATATCCGTATTTTGGCAGGCAGAACGCT
CCCCCTGCCCAGGACCAATTTGGCGTTGGATTCGTCATTACCGTGCCAAA
TGAAGAGGTCATCCTCAGCCACCACGCAATCCTCCTCCTTGTGAAGCTGC
TGTTCGAGGGGGTCAATCAGGCACACAGCTTGGCGCGCGCAGCCGATGGC
CACAACCTCGTCCGCCGAATGGCTGTTGTGGAGCTTGGCATCCGGGAAGC
GGGCTCCCACTGCCGCCTGAAGCTTGGGGATTTGCATTGTGGCGCCTAGT
AGAACGATGTCATCTATTTTACTCAACCCGGGATGCTCCTTTTGCGCCTG
CTCCACACACTCGCCTAGCTGCTGGATGAGGTTATTGATCACTGGCTGTA
TGAGGCTCTCGAAGCGAGCACGCGACATCTGGGCATTGTAATCAACGCCG
TCCATCAGGGAGTCGATATAAAGTTGCGTGGAAGGCATCGTGGTCAGGAT
GTGTTTGCAATTGGCGGCGGCAGTGCGTATTTTGGCCACTGAGCGGCGAG
ACTCATGCGGATCTAGCTTGTACTTGCGACGGAACTCCTCGCAAATAAAC
TGCACCAAGGCCTCGGTGAATTGCCGGCCACCGATGGGGAAGGGTCCGAA
AGTGGCCAGCTGAACGAACAGGCCATTTTGGACGGAGT
BS06652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7182-PA | 1542 | CG7182-RA | 671..1542 | 888..17 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7182-RB | 1962 | CG7182-RB | 984..1859 | 888..13 | 4365 | 99.9 | Minus |
| CG7182-RA | 1786 | CG7182-RA | 808..1683 | 888..13 | 4365 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8344524..8345399 | 13..888 | 4365 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:39:27 has no hits.
BS06652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:00 Download gff for
BS06652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-PA | 671..1542 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:25 Download gff for
BS06652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-PA | 671..1542 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:14:32 Download gff for
BS06652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 808..1683 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:30 Download gff for
BS06652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 808..1683 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:30 Download gff for
BS06652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8344524..8345399 | 13..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:14:32 Download gff for
BS06652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8337624..8338499 | 13..888 | 99 | | Plus |
BS06652.5prime Sequence
889 bp (836 high quality bases) assembled on 2005-12-04
> BS06652.5prime
GAAGTTATCAGTCGACATGTGGCCGCGATTTGGCATTAAGATTGGCAACA
GCACGCTTTGCATCGCCCATGTGCGCGCGGATGGCAAGGCGGAGGTGATC
GCCAACAAACAGGGCGACCGAGTGTCCCAAGCGTGCCTTCTCTGGGACGG
AGCCTCGGAGATCGAATGTGGCCTCACGGCCAAGCAGAAGATGGCCAACC
GTCCGCGCCAGGCGGTGGCGCACAGCTTTCAGTTGCTTCAGCCCAAGGAA
GAGCTCACGGAGGAGAAACTGTCCAGTGCGCTGCGTGAAATACCCTGCGA
CTTTGACAAGGAGGAGCTGGTGTTCCGGATGGAGCACACTGTACCCTCCG
ACAGGGAGGACCAAGACGATAGAGTTGTGACCAAGGACCTCAGCGCCTAT
CAGGTGACGGTGGAGCTGCTGCGCGCTGAGCTGGAGCTGGCCCATCAATA
TCACACGGACGGGGAGCAGGCGCCCATTGCCGTGCTATCCATACCCAGCT
ACTATCCCGCCTCGGCCTACAAACTGCTAGCAGATGCCGCTCAAACCGCT
GGCTTCCATGTGGCCCAGATTATAACCGAACCCACGGCCGCCGTTCTAGG
CTATAGCATCGGCGAGGAGCAGACGGAACAGCGCCGCCATGTGCTGACAA
TCAAATGCGGTGGCTTATATAGCGACATCGCATTCTACTCCGTCCAAAAT
GGCCTGTTCGTTCAGCTGGCCACTTTCGGACCCTTCCCCATCGGTGGCCG
GCAATTCACCGAGGCCTTGGTGCAGTTTATTTGCGAGGAGTTCCGTCGCA
AGTACAAGCTAGATCCGCATGAGTCTCGCCGCTCAGTGGCCAAATACGCA
CTGCCGCCGCCAATTGCAAACACATCCTGACCACGATGC
BS06652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7182-PA | 1542 | CG7182-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG7182-PA | 1542 | CG7182-RA | 827..874 | 842..889 | 240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7182-RB | 1962 | CG7182-RB | 314..1187 | 17..889 | 4345 | 99.9 | Plus |
| CG7182-RA | 1786 | CG7182-RA | 138..1011 | 17..889 | 4345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8345196..8346069 | 889..17 | 4320 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:12:39 has no hits.
BS06652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:01 Download gff for
BS06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-PA | 1..874 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:26 Download gff for
BS06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-PA | 1..874 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:37 Download gff for
BS06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 138..1011 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:36:06 Download gff for
BS06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 138..1011 | 17..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:36:06 Download gff for
BS06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8345196..8346069 | 17..889 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:37 Download gff for
BS06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8338296..8339169 | 17..889 | 99 | | Minus |
BS06652.complete Sequence
1574 bp (1574 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635579
> BS06652.complete
GAAGTTATCAGTCGACATGTGGCCGCGATTTGGCATTAAGATTGGCAACA
GCACGCTTTGCATCGCCCATGTGCGCGCGGATGGCAAGGCGGAGGTGATC
GCCAACAAACAGGGCGACCGAGTGTCCCAAGCGTGCCTTCTCTGGGACGG
AGCCTCGGAGATCGAATGTGGCCTCACGGCCAAGCAGAAGATGGCCAACC
GTCCGCGCCAGGCGGTGGCGCACAGCTTTCAGTTGCTTCAGCCCAAGGAA
GAGCTCACGGAGGAGAAACTGTCCAGTGCGCTGCGTGAAATACCCTGCGA
CTTTGACAAGGAGGAGCTGGTGTTCCGGATGGAGCACACTGTACCCTCCG
ACAGGGAGGACCAAGACGATAGAGTTGTGACCAAGGACCTCAGCGCCTAT
CAGGTGACGGTGGAGCTGCTGCGCGCTGAGCTGGAGCTGGCCCATCAATA
TCACACGGACGGGGAGCAGGCGCCCATTGCCGTGCTATCCATACCCAGCT
ACTATCCCGCCTCGGCCTACAAACTGCTAGCAGATGCCGCTCAAACCGCT
GGCTTCCATGTGGCCCAGATTATAACCGAACCCACGGCCGCCGTTCTAGG
CTATAGCATCGGCGAGGAGCAGACGGAACAGCGCCGCCATGTGCTGACAA
TCAAATGCGGTGGCTTATATAGCGACATCGCATTCTACTCCGTCCAAAAT
GGCCTGTTCGTTCAGCTGGCCACTTTCGGACCCTTCCCCATCGGTGGCCG
GCAATTCACCGAGGCCTTGGTGCAGTTTATTTGCGAGGAGTTCCGTCGCA
AGTACAAGCTAGATCCGCATGAGTCTCGCCGCTCAGTGGCCAAAATACGC
ACTGCCGCCGCCAATTGCAAACACATCCTGACCACGATGCCTTCCACGCA
ACTTTATATCGACTCCCTGATGGACGGCGTTGATTACAATGCCCAGATGT
CGCGTGCTCGCTTCGAGAGCCTCATACAGCCAGTGATCAATAACCTCATC
CAGCAGCTAGGCGAGTGTGTGGAGCAGGCGCAAAAGGAGCATCCCGGGTT
GAGTAAAATAGATGACATCGTTCTACTAGGCGCCACAATGCAAATCCCCA
AGCTTCAGGCGGCAGTGGGAGCCCGCTTCCCGGATGCCAAGCTCCACAAC
AGCCATTCGGCGGACGAGGTTGTGGCCATCGGCTGCGCGCGCCAAGCTGT
GTGCCTGATTGACCCCCTCGAACAGCAGCTTCACAAGGAGGAGGATTGCG
TGGTGGCTGAGGATGACCTCTTCATTTGGCACGGTAATGACGAATCCAAC
GCCAAATTGGTCCTGGGCAGGGGGAGCGTTCTGCCTGCCAAAATACGGAT
ATCACTGCCCCAATCAGAGGAGGGAAAGGGTGACGACGTAAGCAAAGCAG
CTGCTTCGTTTAAGCTGCGCACCGGGGAGAGCGAGATCCTGGCCCGTCTG
CCCGACAGCACGATACCGGAGGATGGGCTTTACCAGCTAGAGGTTGAGGT
AGATGTGGACGATAAGGACGGCAACGTGGTGCCGCTGGTGCGACTGCGCT
GCATGTGAAAGCTTTCTAGACCAT
BS06652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7182-RB | 1542 | CG7182-PB | 1..1542 | 17..1558 | 7710 | 100 | Plus |
| CG7182-RA | 1542 | CG7182-PA | 1..1542 | 17..1558 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7182-RB | 1962 | CG7182-RB | 314..1859 | 17..1562 | 7715 | 99.9 | Plus |
| CG7182-RA | 1786 | CG7182-RA | 138..1683 | 17..1562 | 7715 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8344524..8346069 | 1562..17 | 7715 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:14:27 has no hits.
BS06652.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:16 Download gff for
BS06652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 1..1542 | 17..1558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:09 Download gff for
BS06652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 262..1807 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:53 Download gff for
BS06652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 138..1678 | 17..1557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:16 Download gff for
BS06652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 262..1807 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:48 Download gff for
BS06652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7182-RA | 138..1678 | 17..1557 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:48 Download gff for
BS06652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8344529..8346069 | 17..1557 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:53 Download gff for
BS06652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8337629..8339169 | 17..1557 | 100 | | Minus |
BS06652.pep Sequence
Translation from 16 to 1557
> BS06652.pep
MWPRFGIKIGNSTLCIAHVRADGKAEVIANKQGDRVSQACLLWDGASEIE
CGLTAKQKMANRPRQAVAHSFQLLQPKEELTEEKLSSALREIPCDFDKEE
LVFRMEHTVPSDREDQDDRVVTKDLSAYQVTVELLRAELELAHQYHTDGE
QAPIAVLSIPSYYPASAYKLLADAAQTAGFHVAQIITEPTAAVLGYSIGE
EQTEQRRHVLTIKCGGLYSDIAFYSVQNGLFVQLATFGPFPIGGRQFTEA
LVQFICEEFRRKYKLDPHESRRSVAKIRTAAANCKHILTTMPSTQLYIDS
LMDGVDYNAQMSRARFESLIQPVINNLIQQLGECVEQAQKEHPGLSKIDD
IVLLGATMQIPKLQAAVGARFPDAKLHNSHSADEVVAIGCARQAVCLIDP
LEQQLHKEEDCVVAEDDLFIWHGNDESNAKLVLGRGSVLPAKIRISLPQS
EEGKGDDVSKAAASFKLRTGESEILARLPDSTIPEDGLYQLEVEVDVDDK
DGNVVPLVRLRCM*
BS06652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7182-PB | 513 | CG7182-PB | 1..513 | 1..513 | 2634 | 100 | Plus |
| CG7182-PA | 513 | CG7182-PA | 1..513 | 1..513 | 2634 | 100 | Plus |
| Hsp70Bbb-PA | 641 | CG5834-PA | 2..378 | 3..397 | 442 | 30.6 | Plus |
| Hsp70Bc-PA | 641 | CG6489-PA | 2..378 | 3..397 | 440 | 30.6 | Plus |
| Hsp70Bb-PA | 641 | CG31359-PA | 2..378 | 3..397 | 440 | 30.6 | Plus |
