Clone Sequence Records
BS06653.3prime Sequence
947 bp (765 high quality bases) assembled on 2005-12-04
> BS06653.3prime
ATGGTCTAGAAAGCTTCTAATGAACACCGGATGTCCCCTCTACTTCAGCC
ACCTCAGCCACCTGATCTTCCGATTCAATTTGGCTGGCCTCGCACACACA
TTGGGCCTTGACTTTGTCGTTATCGCTATCACCCAGTGGCGTGGATGGGG
GGCAGGAGGTGGTCGAGGGATGGCAGGCGGCAGGTGCCTGCATCAGAGCG
AGATCAAAGTGCGGCTGATCGCAGAGCGTGAGACTCTGGCTGAGATGGCG
GGCGATCACTTGGACCATGTGCCTGGCCAGCGGCGGAGCGAACATAACCC
GACGAAGGAGCGACCAAGTGGAGCCCATGAGTGAGCTGCCATAGTGATTG
TGCTCCTCTGGTGGCCTATTCTCCAGACGTTTCTCTGCGATCGGTGTCAG
ATTCTCAACGCTGCTGTTGGTGCTTTCTTGGTGGTTCTTCTCCTGATTTC
TGATCTCCATTTCTAAACTCCTTCCGTTCCTGATCTTTTCCTGCTGGTTT
TTCTTGGTCCTCTGCAGAGTTTGTCTTTGAGTCCTCTGTTTTCGATTCCT
TCGCTTCTTGTGCTGCACATTGTTTGTAGTCATGCGATTTGTGTGCACCT
TCTCAAGATCCCTTGGGGTCTCCCGCAGCTCCTTCTCCCTCTCCATCTGC
TGATGGATCCAACTGATCATGCCCTTCTCCTGGATCTTGAAACCCTCATT
GAGTAGGCTATTCCTGCGCAGAAATTGGAGCGTATCATCGTAGCCCTGCT
GACAGAAATTGGCCATGAAATCCGCCCTGCCCGGCACCAAGATGCGCACC
ATGCGACGCAGATTCCGCCTGGACAATCGGATGCAAGTGTTCGCCCCATT
GATGTTCAGCTGAAGCAGATGGGGGTTCTGATCCCGTGGGCATATGTCGC
TCTCCCCGCAGAATGGACTTACGGTGACGGTGTGCTCGTCCAGCAAC
BS06653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5560-PA | 1443 | CG5560-RA | 515..1443 | 945..17 | 4620 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dob-RA | 1855 | CG5560-RA | 701..1629 | 945..17 | 4630 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15067937..15068865 | 945..17 | 4630 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:21:15 has no hits.
BS06653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:02 Download gff for
BS06653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5560-PA | 513..1443 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:27 Download gff for
BS06653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5560-PA | 513..1443 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:20 Download gff for
BS06653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dob-RA | 699..1631 | 13..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:57 Download gff for
BS06653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dob-RA | 699..1631 | 13..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:57 Download gff for
BS06653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15067935..15068867 | 13..947 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:20 Download gff for
BS06653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14961968..14962900 | 13..947 | 99 | | Minus |
BS06653.5prime Sequence
872 bp (760 high quality bases) assembled on 2005-12-04
> BS06653.5prime
GAAGTTATCAGTCGACATGAAGATCCGAACCAGGAGGAGTCTTTCCTTTT
CCGGCTGTGGCTTCTTGGGCATCTATCACGTGGGCGTGGCCGTCTGCCTA
CGCCAACACGCCCCCCAACTTTTGCTGGAGAGGATTGCCGGTGCATCCGC
CGGTGCCTTGGCCGCCTGCTGTCTCATCTGTGATCTTCCGCTGGAATGCA
TGGCCGGGGATTTCCTGCGAGTTGTCCAGGAGATACAACGGCATTCGTTG
GGCGCCTTCAGTCCGTGGTTCAATTTGCCGGAGTGCCTTCTCGAGGGCAT
GCGAAGTTGGTTGCCCGAGGACGCCCATCTACTGGCCAGCGGACGACTTC
ATATTTCCCTTACCCGCGTCAGCGATCGCCGCAATGTGGTAATGTCGGAG
TTCAGCTCCCGGCAGGAGCTACTCCAGGCCCTCATGTGCTCCTGCTTCAT
TCCCGGACTGTCTGGATTGGTGCCTCCACAGGTCCGAGGAGTTCGCTATA
TGGATGGGGCCTTTTCCGATAATCTACCGCTGCTGGACGAGCACACCGTC
ACCGTAAGTCCATTCTGCGGGGAGAGCGACATATGCCCACGGGATCAGAA
CCCCCATCTGCTTCAGCTGAACATCAATTGGGCGAACACTTGCATCCGAT
TGTCCAGGCGGAATCTGCGTCGCATGGTGCGCATCTTGGTGCCGGGCAGG
GCGGATTTCATGGCCAATTTCTGTCAGCAGGGCTACGATGATACGCTCCA
ATTTCTGCGCAGGAATAGCCTACTCAATGAGGGTTTCAAGATCCAGGAGA
AGGGCATGATCAGTTGGATCCATCAGCAGATGGAGAGGGAGAAGGAGCTG
CGGGAGACCCCCAGGGATCTTG
BS06653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5560-PA | 1443 | CG5560-RA | 1..856 | 17..872 | 4255 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dob-RA | 1855 | CG5560-RA | 187..1042 | 17..872 | 4265 | 99.9 | Plus |
bmm-RB | 2301 | CG5295-RB | 641..899 | 341..599 | 305 | 75.5 | Plus |
bmm-RA | 2437 | CG5295-RA | 641..899 | 341..599 | 305 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15067193..15067659 | 17..483 | 2335 | 100 | Plus |
X | 23542271 | X | 15067885..15068278 | 479..872 | 1955 | 99.7 | Plus |
3L | 28110227 | 3L | 14778618..14778876 | 599..341 | 290 | 74.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:28:28 has no hits.
BS06653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:03 Download gff for
BS06653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5560-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:28 Download gff for
BS06653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5560-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:11:19 Download gff for
BS06653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dob-RA | 187..1042 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:05 Download gff for
BS06653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dob-RA | 187..1042 | 17..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:05 Download gff for
BS06653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15067193..15067657 | 17..481 | 100 | -> | Plus |
X | 15067888..15068278 | 482..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:11:19 Download gff for
BS06653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14961226..14961690 | 17..481 | 100 | -> | Plus |
arm_X | 14961921..14962311 | 482..872 | 99 | | Plus |
BS06653.complete Sequence
1475 bp (1475 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635580
> BS06653.complete
GAAGTTATCAGTCGACATGAAGATCCGAACCAGGAGGAGTCTTTCCTTTT
CCGGCTGTGGCTTCTTGGGCATCTATCACGTGGGCGTGGCCGTCTGCCTA
CGCCAACACGCCCCCCAACTTTTGCTGGAGAGGATTGCCGGTGCATCCGC
CGGTGCCTTGGCCGCCTGCTGTCTCATCTGTGATCTTCCGCTGGAATGCA
TGGCCGGGGATTTCCTGCGAGTTGTCCAGGAGATACAACGGCATTCGTTG
GGCGCCTTCAGTCCGTGGTTCAATTTGCCGGAGTGCCTTCTCGAGGGCAT
GCGAAGTTGGTTGCCCGAGGACGCCCATCTACTGGCCAGCGGACGACTTC
ATATTTCCCTTACCCGCGTCAGCGATCGCCGCAATGTGGTAATGTCGGAG
TTCAGCTCCCGGCAGGAGCTACTCCAGGCCCTCATGTGCTCCTGCTTCAT
TCCCGGACTGTCTGGATTGGTGCCTCCACAGGTCCGAGGAGTTCGCTATA
TGGATGGGGCCTTTTCCGATAATCTACCGCTGCTGGACGAGCACACCGTC
ACCGTAAGTCCATTCTGCGGGGAGAGCGACATATGCCCACGGGATCAGAA
CCCCCATCTGCTTCAGCTGAACATCAATTGGGCGAACACTTGCATCCGAT
TGTCCAGGCGGAATCTGCGTCGCATGGTGCGCATCTTGGTGCCGGGCAGG
GCGGATTTCATGGCCAATTTCTGTCAGCAGGGCTACGATGATACGCTCCA
ATTTCTGCGCAGGAATAGCCTACTCAATGAGGGTTTCAAGATCCAGGAGA
AGGGCATGATCAGTTGGATCCATCAGCAGATGGAGAGGGAGAAGGAGCTG
CGGGAGACCCCAAGGGATCTTGAGAAGGTGCACACAAATCGCATGACTAC
AAACAATGTGCAGCACAAGAAGCGAAGGAATCGAAAACAGAGGACTCAAA
GACAAACTCTGCAGAGGACCAAGAAAAACCAGCAGGAAAAGATCAGGAAC
GGAAGGAGTTTAGAAATGGAGATCAGAAATCAGGAGAAGAACCACCAAGA
AAGCACCAACAGCAGCGTTGAGAATCTGACACCGATCGCAGAGAAACGTC
TGGAGAATAGGCCACCAGAGGAGCACAATCACTATGGCAGCTCACTCATG
GGCTCCACTTGGTCGCTCCTTCGTCGGGTTATGTTCGCTCCGCCGCTGGC
CAGGCACATGGTCCAAGTGATCGCCCGCCATCTCAGCCAGAGTCTCACGC
TCTGCGATCAGCCGCACTTTGATCTCGCTCTGATGCAGGCACCTGCCGCC
TGCCATCCCTCGACCACCTCCTGCCCCCCATCCACGCCACTGGGTGATAG
CGATAACGACAAAGTCAAGGCCCAATGTGTGTGCGAGGCCAGCCAAATTG
AATCGGAAGATCAGGTGGCTGAGGTGGCTGAAGTAGAGGGGACATCCGGT
GTTCATTAGAAGCTTTCTAGACCAT
BS06653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dob-RA | 1443 | CG5560-PA | 1..1443 | 17..1459 | 7215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dob-RA | 1855 | CG5560-RA | 187..1629 | 17..1459 | 7215 | 100 | Plus |
bmm-RB | 2301 | CG5295-RB | 641..899 | 341..599 | 290 | 74.1 | Plus |
bmm-RA | 2437 | CG5295-RA | 641..899 | 341..599 | 290 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15067885..15068865 | 479..1459 | 4905 | 100 | Plus |
X | 23542271 | X | 15067193..15067659 | 17..483 | 2335 | 100 | Plus |
3L | 28110227 | 3L | 14778618..14778876 | 599..341 | 290 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:45:21 has no hits.
BS06653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:17 Download gff for
BS06653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dob-RA | 1..1443 | 17..1459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:06 Download gff for
BS06653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dob-RA | 191..1635 | 17..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:06 Download gff for
BS06653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dob-RA | 187..1629 | 17..1459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:17 Download gff for
BS06653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dob-RA | 191..1635 | 17..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:30 Download gff for
BS06653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dob-RA | 187..1629 | 17..1459 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:30 Download gff for
BS06653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15067193..15067657 | 17..481 | 100 | -> | Plus |
X | 15067888..15068865 | 482..1459 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:06 Download gff for
BS06653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14961226..14961690 | 17..481 | 100 | -> | Plus |
arm_X | 14961921..14962898 | 482..1459 | 100 | | Plus |
BS06653.pep Sequence
Translation from 16 to 1458
> BS06653.pep
MKIRTRRSLSFSGCGFLGIYHVGVAVCLRQHAPQLLLERIAGASAGALAA
CCLICDLPLECMAGDFLRVVQEIQRHSLGAFSPWFNLPECLLEGMRSWLP
EDAHLLASGRLHISLTRVSDRRNVVMSEFSSRQELLQALMCSCFIPGLSG
LVPPQVRGVRYMDGAFSDNLPLLDEHTVTVSPFCGESDICPRDQNPHLLQ
LNINWANTCIRLSRRNLRRMVRILVPGRADFMANFCQQGYDDTLQFLRRN
SLLNEGFKIQEKGMISWIHQQMEREKELRETPRDLEKVHTNRMTTNNVQH
KKRRNRKQRTQRQTLQRTKKNQQEKIRNGRSLEMEIRNQEKNHQESTNSS
VENLTPIAEKRLENRPPEEHNHYGSSLMGSTWSLLRRVMFAPPLARHMVQ
VIARHLSQSLTLCDQPHFDLALMQAPAACHPSTTSCPPSTPLGDSDNDKV
KAQCVCEASQIESEDQVAEVAEVEGTSGVH*
BS06653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dob-PA | 480 | CG5560-PA | 1..480 | 1..480 | 2530 | 100 | Plus |
bmm-PA | 507 | CG5295-PA | 2..288 | 8..293 | 937 | 61.2 | Plus |
bmm-PB | 553 | CG5295-PB | 2..288 | 8..293 | 937 | 61.2 | Plus |