Clone BS06653 Report

Search the DGRC for BS06653

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:53
Vector:pDNR-Dual
Associated Gene/Transcriptdob-RA
Protein status:BS06653.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06653.3prime Sequence

947 bp (765 high quality bases) assembled on 2005-12-04

> BS06653.3prime
ATGGTCTAGAAAGCTTCTAATGAACACCGGATGTCCCCTCTACTTCAGCC
ACCTCAGCCACCTGATCTTCCGATTCAATTTGGCTGGCCTCGCACACACA
TTGGGCCTTGACTTTGTCGTTATCGCTATCACCCAGTGGCGTGGATGGGG
GGCAGGAGGTGGTCGAGGGATGGCAGGCGGCAGGTGCCTGCATCAGAGCG
AGATCAAAGTGCGGCTGATCGCAGAGCGTGAGACTCTGGCTGAGATGGCG
GGCGATCACTTGGACCATGTGCCTGGCCAGCGGCGGAGCGAACATAACCC
GACGAAGGAGCGACCAAGTGGAGCCCATGAGTGAGCTGCCATAGTGATTG
TGCTCCTCTGGTGGCCTATTCTCCAGACGTTTCTCTGCGATCGGTGTCAG
ATTCTCAACGCTGCTGTTGGTGCTTTCTTGGTGGTTCTTCTCCTGATTTC
TGATCTCCATTTCTAAACTCCTTCCGTTCCTGATCTTTTCCTGCTGGTTT
TTCTTGGTCCTCTGCAGAGTTTGTCTTTGAGTCCTCTGTTTTCGATTCCT
TCGCTTCTTGTGCTGCACATTGTTTGTAGTCATGCGATTTGTGTGCACCT
TCTCAAGATCCCTTGGGGTCTCCCGCAGCTCCTTCTCCCTCTCCATCTGC
TGATGGATCCAACTGATCATGCCCTTCTCCTGGATCTTGAAACCCTCATT
GAGTAGGCTATTCCTGCGCAGAAATTGGAGCGTATCATCGTAGCCCTGCT
GACAGAAATTGGCCATGAAATCCGCCCTGCCCGGCACCAAGATGCGCACC
ATGCGACGCAGATTCCGCCTGGACAATCGGATGCAAGTGTTCGCCCCATT
GATGTTCAGCTGAAGCAGATGGGGGTTCTGATCCCGTGGGCATATGTCGC
TCTCCCCGCAGAATGGACTTACGGTGACGGTGTGCTCGTCCAGCAAC

BS06653.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5560-PA 1443 CG5560-RA 515..1443 945..17 4620 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
dob-RA 1855 CG5560-RA 701..1629 945..17 4630 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15067937..15068865 945..17 4630 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 10:21:15 has no hits.

BS06653.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:02 Download gff for BS06653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5560-PA 513..1443 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:27 Download gff for BS06653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5560-PA 513..1443 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:20 Download gff for BS06653.3prime
Subject Subject Range Query Range Percent Splice Strand
dob-RA 699..1631 13..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:57 Download gff for BS06653.3prime
Subject Subject Range Query Range Percent Splice Strand
dob-RA 699..1631 13..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:57 Download gff for BS06653.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15067935..15068867 13..947 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:20 Download gff for BS06653.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14961968..14962900 13..947 99   Minus

BS06653.5prime Sequence

872 bp (760 high quality bases) assembled on 2005-12-04

> BS06653.5prime
GAAGTTATCAGTCGACATGAAGATCCGAACCAGGAGGAGTCTTTCCTTTT
CCGGCTGTGGCTTCTTGGGCATCTATCACGTGGGCGTGGCCGTCTGCCTA
CGCCAACACGCCCCCCAACTTTTGCTGGAGAGGATTGCCGGTGCATCCGC
CGGTGCCTTGGCCGCCTGCTGTCTCATCTGTGATCTTCCGCTGGAATGCA
TGGCCGGGGATTTCCTGCGAGTTGTCCAGGAGATACAACGGCATTCGTTG
GGCGCCTTCAGTCCGTGGTTCAATTTGCCGGAGTGCCTTCTCGAGGGCAT
GCGAAGTTGGTTGCCCGAGGACGCCCATCTACTGGCCAGCGGACGACTTC
ATATTTCCCTTACCCGCGTCAGCGATCGCCGCAATGTGGTAATGTCGGAG
TTCAGCTCCCGGCAGGAGCTACTCCAGGCCCTCATGTGCTCCTGCTTCAT
TCCCGGACTGTCTGGATTGGTGCCTCCACAGGTCCGAGGAGTTCGCTATA
TGGATGGGGCCTTTTCCGATAATCTACCGCTGCTGGACGAGCACACCGTC
ACCGTAAGTCCATTCTGCGGGGAGAGCGACATATGCCCACGGGATCAGAA
CCCCCATCTGCTTCAGCTGAACATCAATTGGGCGAACACTTGCATCCGAT
TGTCCAGGCGGAATCTGCGTCGCATGGTGCGCATCTTGGTGCCGGGCAGG
GCGGATTTCATGGCCAATTTCTGTCAGCAGGGCTACGATGATACGCTCCA
ATTTCTGCGCAGGAATAGCCTACTCAATGAGGGTTTCAAGATCCAGGAGA
AGGGCATGATCAGTTGGATCCATCAGCAGATGGAGAGGGAGAAGGAGCTG
CGGGAGACCCCCAGGGATCTTG

BS06653.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5560-PA 1443 CG5560-RA 1..856 17..872 4255 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
dob-RA 1855 CG5560-RA 187..1042 17..872 4265 99.9 Plus
bmm-RB 2301 CG5295-RB 641..899 341..599 305 75.5 Plus
bmm-RA 2437 CG5295-RA 641..899 341..599 305 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15067193..15067659 17..483 2335 100 Plus
X 23542271 X 15067885..15068278 479..872 1955 99.7 Plus
3L 28110227 3L 14778618..14778876 599..341 290 74.1 Minus
Blast to na_te.dros performed on 2015-02-11 09:28:28 has no hits.

BS06653.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:03 Download gff for BS06653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5560-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:28 Download gff for BS06653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5560-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:11:19 Download gff for BS06653.5prime
Subject Subject Range Query Range Percent Splice Strand
dob-RA 187..1042 17..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:05 Download gff for BS06653.5prime
Subject Subject Range Query Range Percent Splice Strand
dob-RA 187..1042 17..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:05 Download gff for BS06653.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15067193..15067657 17..481 100 -> Plus
X 15067888..15068278 482..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:11:19 Download gff for BS06653.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14961226..14961690 17..481 100 -> Plus
arm_X 14961921..14962311 482..872 99   Plus

BS06653.complete Sequence

1475 bp (1475 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635580

> BS06653.complete
GAAGTTATCAGTCGACATGAAGATCCGAACCAGGAGGAGTCTTTCCTTTT
CCGGCTGTGGCTTCTTGGGCATCTATCACGTGGGCGTGGCCGTCTGCCTA
CGCCAACACGCCCCCCAACTTTTGCTGGAGAGGATTGCCGGTGCATCCGC
CGGTGCCTTGGCCGCCTGCTGTCTCATCTGTGATCTTCCGCTGGAATGCA
TGGCCGGGGATTTCCTGCGAGTTGTCCAGGAGATACAACGGCATTCGTTG
GGCGCCTTCAGTCCGTGGTTCAATTTGCCGGAGTGCCTTCTCGAGGGCAT
GCGAAGTTGGTTGCCCGAGGACGCCCATCTACTGGCCAGCGGACGACTTC
ATATTTCCCTTACCCGCGTCAGCGATCGCCGCAATGTGGTAATGTCGGAG
TTCAGCTCCCGGCAGGAGCTACTCCAGGCCCTCATGTGCTCCTGCTTCAT
TCCCGGACTGTCTGGATTGGTGCCTCCACAGGTCCGAGGAGTTCGCTATA
TGGATGGGGCCTTTTCCGATAATCTACCGCTGCTGGACGAGCACACCGTC
ACCGTAAGTCCATTCTGCGGGGAGAGCGACATATGCCCACGGGATCAGAA
CCCCCATCTGCTTCAGCTGAACATCAATTGGGCGAACACTTGCATCCGAT
TGTCCAGGCGGAATCTGCGTCGCATGGTGCGCATCTTGGTGCCGGGCAGG
GCGGATTTCATGGCCAATTTCTGTCAGCAGGGCTACGATGATACGCTCCA
ATTTCTGCGCAGGAATAGCCTACTCAATGAGGGTTTCAAGATCCAGGAGA
AGGGCATGATCAGTTGGATCCATCAGCAGATGGAGAGGGAGAAGGAGCTG
CGGGAGACCCCAAGGGATCTTGAGAAGGTGCACACAAATCGCATGACTAC
AAACAATGTGCAGCACAAGAAGCGAAGGAATCGAAAACAGAGGACTCAAA
GACAAACTCTGCAGAGGACCAAGAAAAACCAGCAGGAAAAGATCAGGAAC
GGAAGGAGTTTAGAAATGGAGATCAGAAATCAGGAGAAGAACCACCAAGA
AAGCACCAACAGCAGCGTTGAGAATCTGACACCGATCGCAGAGAAACGTC
TGGAGAATAGGCCACCAGAGGAGCACAATCACTATGGCAGCTCACTCATG
GGCTCCACTTGGTCGCTCCTTCGTCGGGTTATGTTCGCTCCGCCGCTGGC
CAGGCACATGGTCCAAGTGATCGCCCGCCATCTCAGCCAGAGTCTCACGC
TCTGCGATCAGCCGCACTTTGATCTCGCTCTGATGCAGGCACCTGCCGCC
TGCCATCCCTCGACCACCTCCTGCCCCCCATCCACGCCACTGGGTGATAG
CGATAACGACAAAGTCAAGGCCCAATGTGTGTGCGAGGCCAGCCAAATTG
AATCGGAAGATCAGGTGGCTGAGGTGGCTGAAGTAGAGGGGACATCCGGT
GTTCATTAGAAGCTTTCTAGACCAT

BS06653.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
dob-RA 1443 CG5560-PA 1..1443 17..1459 7215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
dob-RA 1855 CG5560-RA 187..1629 17..1459 7215 100 Plus
bmm-RB 2301 CG5295-RB 641..899 341..599 290 74.1 Plus
bmm-RA 2437 CG5295-RA 641..899 341..599 290 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15067885..15068865 479..1459 4905 100 Plus
X 23542271 X 15067193..15067659 17..483 2335 100 Plus
3L 28110227 3L 14778618..14778876 599..341 290 74.1 Minus
Blast to na_te.dros performed on 2014-11-27 23:45:21 has no hits.

BS06653.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:17 Download gff for BS06653.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 1..1443 17..1459 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:06 Download gff for BS06653.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 191..1635 17..1463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:06 Download gff for BS06653.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 187..1629 17..1459 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:17 Download gff for BS06653.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 191..1635 17..1463 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:30 Download gff for BS06653.complete
Subject Subject Range Query Range Percent Splice Strand
dob-RA 187..1629 17..1459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:30 Download gff for BS06653.complete
Subject Subject Range Query Range Percent Splice Strand
X 15067193..15067657 17..481 100 -> Plus
X 15067888..15068865 482..1459 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:06 Download gff for BS06653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14961226..14961690 17..481 100 -> Plus
arm_X 14961921..14962898 482..1459 100   Plus

BS06653.pep Sequence

Translation from 16 to 1458

> BS06653.pep
MKIRTRRSLSFSGCGFLGIYHVGVAVCLRQHAPQLLLERIAGASAGALAA
CCLICDLPLECMAGDFLRVVQEIQRHSLGAFSPWFNLPECLLEGMRSWLP
EDAHLLASGRLHISLTRVSDRRNVVMSEFSSRQELLQALMCSCFIPGLSG
LVPPQVRGVRYMDGAFSDNLPLLDEHTVTVSPFCGESDICPRDQNPHLLQ
LNINWANTCIRLSRRNLRRMVRILVPGRADFMANFCQQGYDDTLQFLRRN
SLLNEGFKIQEKGMISWIHQQMEREKELRETPRDLEKVHTNRMTTNNVQH
KKRRNRKQRTQRQTLQRTKKNQQEKIRNGRSLEMEIRNQEKNHQESTNSS
VENLTPIAEKRLENRPPEEHNHYGSSLMGSTWSLLRRVMFAPPLARHMVQ
VIARHLSQSLTLCDQPHFDLALMQAPAACHPSTTSCPPSTPLGDSDNDKV
KAQCVCEASQIESEDQVAEVAEVEGTSGVH*

BS06653.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
dob-PA 480 CG5560-PA 1..480 1..480 2530 100 Plus
bmm-PA 507 CG5295-PA 2..288 8..293 937 61.2 Plus
bmm-PB 553 CG5295-PB 2..288 8..293 937 61.2 Plus