Clone Sequence Records
BS06654.3prime Sequence
841 bp (778 high quality bases) assembled on 2005-12-04
> BS06654.3prime
ATGGTCTAGAAAGCTTTTACTCGCCATTCTTTTGTTCGTCCTCAGATTCG
GATTCTTCTTCGGCTGACTGAAGCCATTCGACAAACTTTCGCATTTGTTC
AAGGAAATGCATTTTGCCCTTGTTTGAGTGGCCCTCCTTGTACCAGCGCA
AGATGATCTCCTCGGACAGGACCTCGGTCTTGTAGAACAACAAAATGATT
TTCTGGAAGGCCTTCATGAAGTTCATGTTCTCGTAGCAGAATTCCTGCAC
CTTCAAGATTAGGGCCAATTCCGAACGGTCGGTCGAGGCGAAAGCCTGCA
ACAGTGGGCAGTAGTTCTTCAGATGACGAACAGCCTGATCGGTAACCAGC
TCCTCCTTCTTGTTCCATTCGCCCAATGACATGATGGTGGACCAAATAAT
AACAATTATTTCATGATCGGGAATGTTGGTGCGCTGCGAGAAGTCCTTAA
TGTCTGAGGTTATCTCATTATATGGCTTCTCATCGTTGATATCATCGATG
AGCGCCTGCTGCAACTCACGCTTCGCCTCCTGGCTAGCCTGAGCCTTATG
TAGCTTGACGATCTCGTTAAGTTCTTTGTCAAGAAAAACTTGTTTAAAAT
ATTCCTCAGTACGTTTGTTCGGTGGGAAAAAGTCCATAAGTTTGCTTTCC
AGTCCACCCTTCTTAAGCGCCTGAATCAGATATGCAATGCCCTTCTCTTG
CTTGAACGTCTGGAACAGCTCTAGTAGAAACTCCAATGCAATGCCATCCT
TGATTAGGTGCTCGTTGTTTAGTACCAGTAAAACATTTGGCGGTACAGAA
CCGTTGACTAACCAGAGCGCTGTCATACGCGCAAGCTTGAT
BS06654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2922-PG | 1269 | eIF-5C-RG | 445..1269 | 841..17 | 4125 | 100 | Minus |
| CG2922-PC | 1269 | eIF-5C-RC | 445..1269 | 841..17 | 4125 | 100 | Minus |
| CG2922-PF | 1269 | eIF-5C-RF | 445..1269 | 841..17 | 4125 | 100 | Minus |
| CG2922-PD | 1269 | eIF-5C-RD | 445..1269 | 841..17 | 4125 | 100 | Minus |
| CG2922-PB | 1269 | eIF-5C-RB | 445..1269 | 841..17 | 4125 | 100 | Minus |
| CG2922-PE | 1269 | eIF-5C-RE | 445..1269 | 841..17 | 4125 | 100 | Minus |
| CG2922-PA | 1269 | eIF-5C-RA | 445..1269 | 841..17 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kra-RE | 1701 | CG2922-RE | 665..1489 | 841..17 | 4125 | 100 | Minus |
| kra-RB | 1847 | CG2922-RB | 811..1635 | 841..17 | 4125 | 100 | Minus |
| kra-RD | 2026 | CG2922-RD | 990..1814 | 841..17 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5596861..5597203 | 55..397 | 1715 | 100 | Plus |
| 3R | 32079331 | 3R | 5597272..5597515 | 398..641 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 5597772..5597939 | 642..809 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 5596085..5596124 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:49:48 has no hits.
BS06654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:04 Download gff for
BS06654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2922-PB | 445..1269 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:30 Download gff for
BS06654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2922-PA | 445..1269 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:42:21 Download gff for
BS06654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exba-RD | 990..1826 | 5..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:34 Download gff for
BS06654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kra-RD | 990..1826 | 5..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:34 Download gff for
BS06654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5596861..5597203 | 55..397 | 100 | <- | Plus |
| 3R | 5597272..5597515 | 398..641 | 100 | <- | Plus |
| 3R | 5597772..5597937 | 642..807 | 100 | <- | Plus |
| 3R | 5598204..5598237 | 808..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:42:21 Download gff for
BS06654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1422583..1422925 | 55..397 | 100 | <- | Plus |
| arm_3R | 1422994..1423237 | 398..641 | 100 | <- | Plus |
| arm_3R | 1423494..1423659 | 642..807 | 100 | <- | Plus |
| arm_3R | 1423926..1423959 | 808..841 | 100 | | Plus |
BS06654.5prime Sequence
908 bp (760 high quality bases) assembled on 2005-12-04
> BS06654.5prime
GAAGTTATCAGTCGACATGAGTCAAAAAACTGAAAGACCAGTGCTATCGG
GTCAACGCATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATGACCCA
ACGGGATTCCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAAGGCGA
CCTGGAACAAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCTCGACT
ATCGTCGCTACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAGGTCTA
CTAGTGCCTGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGCACAAG
CTACTGCATCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAACCATG
AGCAGGTATTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGAAAATG
TTCGAAGAGGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTTACTCC
TAGTGAACGCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGTCAACG
GTTCTGTACCGCCAAATGTTTTACTGGTACTAAACAACGAGCACCTAATC
AAGGATGGCATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACGTTCAA
GCAAGAGAAGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGGTGGAC
TGGAAAGCAAACTTATGGACTTTTTCCCACCGAACAAACGTACTGAGGAA
TATTTTAAACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTCAAGCT
ACATAAGGCTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCAGGCGC
TCATCGATGATATCAACGATGAGAAGCCATATAATGAGATAACCTCAGAC
ATTAAGGACTTCTCGCAGCGCACCAACATTCCCGATCATGAAATAATTGG
TATATTTG
BS06654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2922-PG | 1269 | eIF-5C-RG | 1..883 | 17..899 | 4415 | 100 | Plus |
| CG2922-PC | 1269 | eIF-5C-RC | 1..883 | 17..899 | 4415 | 100 | Plus |
| CG2922-PF | 1269 | eIF-5C-RF | 1..883 | 17..899 | 4415 | 100 | Plus |
| CG2922-PD | 1269 | eIF-5C-RD | 1..883 | 17..899 | 4415 | 100 | Plus |
| CG2922-PB | 1269 | eIF-5C-RB | 1..883 | 17..899 | 4415 | 100 | Plus |
| CG2922-PE | 1269 | eIF-5C-RE | 1..883 | 17..899 | 4415 | 100 | Plus |
| CG2922-PA | 1269 | eIF-5C-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kra-RE | 1701 | CG2922-RE | 221..1113 | 17..908 | 4425 | 99.8 | Plus |
| kra-RB | 1847 | CG2922-RB | 367..1259 | 17..908 | 4425 | 99.8 | Plus |
| kra-RD | 2026 | CG2922-RD | 546..1438 | 17..908 | 4425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5597273..5597515 | 903..661 | 1200 | 99.6 | Minus |
| 3R | 32079331 | 3R | 5599116..5599353 | 254..17 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 5597772..5597939 | 660..493 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 5598204..5598345 | 494..353 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 5598942..5599046 | 357..253 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:29:48 has no hits.
BS06654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:05 Download gff for
BS06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2922-PB | 1..893 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:31 Download gff for
BS06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2922-PA | 1..893 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:01 Download gff for
BS06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exba-RD | 546..1438 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:00 Download gff for
BS06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kra-RD | 546..1438 | 17..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:00 Download gff for
BS06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5599116..5599353 | 17..254 | 100 | | Minus |
| 3R | 5597271..5597515 | 661..908 | 98 | <- | Minus |
| 3R | 5597772..5597937 | 495..660 | 100 | <- | Minus |
| 3R | 5598204..5598342 | 356..494 | 100 | <- | Minus |
| 3R | 5598944..5599044 | 255..355 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:01 Download gff for
BS06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1422993..1423237 | 661..908 | 98 | <- | Minus |
| arm_3R | 1423494..1423659 | 495..660 | 100 | <- | Minus |
| arm_3R | 1423926..1424064 | 356..494 | 100 | <- | Minus |
| arm_3R | 1424666..1424766 | 255..355 | 100 | <- | Minus |
| arm_3R | 1424838..1425075 | 17..254 | 100 | | Minus |
BS06654.complete Sequence
1301 bp (1301 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635581
> BS06654.complete
GAAGTTATCAGTCGACATGAGTCAAAAAACTGAAAGACCAGTGCTATCGG
GTCAACGCATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATGACCCA
ACGGGATTCCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAAGGCGA
CCTGGAACAAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCTCGACT
ATCGTCGCTACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAGGTCTA
CTAGTGCCTGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGCACAAG
CTACTGCATCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAACCATG
AGCAGGTATTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGAAAATG
TTCGAAGAGGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTTACTCC
TAGTGAACGCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGTCAACG
GTTCTGTACCGCCAAATGTTTTACTGGTACTAAACAACGAGCACCTAATC
AAGGATGGCATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACGTTCAA
GCAAGAGAAGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGGTGGAC
TGGAAAGCAAACTTATGGACTTTTTCCCACCGAACAAACGTACTGAGGAA
TATTTTAAACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTCAAGCT
ACATAAGGCTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCAGGCGC
TCATCGATGATATCAACGATGAGAAGCCATATAATGAGATAACCTCAGAC
ATTAAGGACTTCTCGCAGCGCACCAACATTCCCGATCATGAAATAATTGT
TATTATTTGGTCCACCATCATGTCATTGGGCGAATGGAACAAGAAGGAGG
AGCTGGTTACCGATCAGGCTGTTCGTCATCTGAAGAACTACTGCCCACTG
TTGCAGGCTTTCGCCTCGACCGACCGTTCGGAATTGGCCCTAATCTTGAA
GGTGCAGGAATTCTGCTACGAGAACATGAACTTCATGAAGGCCTTCCAGA
AAATCATTTTGTTGTTCTACAAGACCGAGGTCCTGTCCGAGGAGATCATC
TTGCGCTGGTACAAGGAGGGCCACTCAAACAAGGGCAAAATGCATTTCCT
TGAACAAATGCGAAAGTTTGTCGAATGGCTTCAGTCAGCCGAAGAAGAAT
CCGAATCTGAGGACGAACAAAAGAATGGCGAGTAAAAGCTTTCTAGACCA
T
BS06654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kra-RE | 1269 | CG2922-PE | 1..1269 | 17..1285 | 6345 | 100 | Plus |
| kra-RB | 1269 | CG2922-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
| kra-RD | 1269 | CG2922-PD | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kra-RE | 1701 | CG2922-RE | 221..1489 | 17..1285 | 6345 | 100 | Plus |
| kra-RB | 1847 | CG2922-RB | 367..1635 | 17..1285 | 6345 | 100 | Plus |
| kra-RD | 2026 | CG2922-RD | 546..1814 | 17..1285 | 6345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5596861..5597203 | 1247..905 | 1715 | 100 | Minus |
| 3R | 32079331 | 3R | 5597272..5597515 | 904..661 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 5599116..5599353 | 254..17 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 5597772..5597939 | 660..493 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 5598204..5598345 | 494..353 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 5598942..5599046 | 357..253 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 5596085..5596124 | 1285..1246 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:01:38 has no hits.
BS06654.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:18 Download gff for
BS06654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exba-RC | 1..1269 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:11 Download gff for
BS06654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exba-RC | 601..1881 | 17..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:55 Download gff for
BS06654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exba-RD | 546..1812 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:19 Download gff for
BS06654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exba-RC | 601..1881 | 17..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:33 Download gff for
BS06654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kra-RD | 546..1812 | 17..1283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:33 Download gff for
BS06654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5596087..5596122 | 1248..1283 | 100 | <- | Minus |
| 3R | 5596861..5597203 | 905..1247 | 100 | <- | Minus |
| 3R | 5597272..5597515 | 661..904 | 100 | <- | Minus |
| 3R | 5597772..5597937 | 495..660 | 100 | <- | Minus |
| 3R | 5598204..5598342 | 356..494 | 100 | <- | Minus |
| 3R | 5598944..5599044 | 255..355 | 100 | <- | Minus |
| 3R | 5599116..5599353 | 17..254 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:55 Download gff for
BS06654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1421809..1421844 | 1248..1283 | 100 | <- | Minus |
| arm_3R | 1423494..1423659 | 495..660 | 100 | <- | Minus |
| arm_3R | 1423926..1424064 | 356..494 | 100 | <- | Minus |
| arm_3R | 1422583..1422925 | 905..1247 | 100 | <- | Minus |
| arm_3R | 1424666..1424766 | 255..355 | 100 | <- | Minus |
| arm_3R | 1422994..1423237 | 661..904 | 100 | <- | Minus |
| arm_3R | 1424838..1425075 | 17..254 | 100 | | Minus |
BS06654.pep Sequence
Translation from 16 to 1284
> BS06654.pep
MSQKTERPVLSGQRIKTRKRDEREKYDPTGFRDAVIAGLEKTEGDLEQIS
KYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFD
APESMESMRNHEQVFVKLIRRYKYLEKMFEEEMGKVLLFVKGFTPSERIK
LARMTALWLVNGSVPPNVLLVLNNEHLIKDGIALEFLLELFQTFKQEKGI
AYLIQALKKGGLESKLMDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQA
SQEAKRELQQALIDDINDEKPYNEITSDIKDFSQRTNIPDHEIIVIIWST
IMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFASTDRSELALILKVQEFC
YENMNFMKAFQKIILLFYKTEVLSEEIILRWYKEGHSNKGKMHFLEQMRK
FVEWLQSAEEESESEDEQKNGE*
BS06654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kra-PE | 422 | CG2922-PE | 1..422 | 1..422 | 2169 | 100 | Plus |
| kra-PB | 422 | CG2922-PB | 1..422 | 1..422 | 2169 | 100 | Plus |
| kra-PD | 422 | CG2922-PD | 1..422 | 1..422 | 2169 | 100 | Plus |
| kra-PF | 422 | CG2922-PF | 1..422 | 1..422 | 2169 | 100 | Plus |
| kra-PC | 422 | CG2922-PC | 1..422 | 1..422 | 2169 | 100 | Plus |
