Clone Sequence Records
BS06655.3prime Sequence
849 bp (821 high quality bases) assembled on 2005-12-04
> BS06655.3prime
ATGGTCTAGAAAGCTTTTAATTAATTTTATACCATTCCAAATCGTCAGGT
TTGTGGGAAGACGGCGGATTTACAATGGCCTGTGCGTCATTGAACAAGTT
ACTGCAAAGATTATCCTCAATCTGGAGGGAAGACACTAAGTTATCTGGGC
AGTCGAGCACGCTAAGCCCAGATTCATTCTGCTTTATTCGCTCGGCCATC
AAGATTTGCTGCTGCTGGCGATATTGGATTCTGGGATCCTCCCACTGCGT
AGATTTTGTAGTATGATTCAAGTAGTAGATCTGGCCATCATTGGTCTTGG
CTTGCTCCCATCCCGGCGGCAAGGCGCCTAGTTGGCGGTTCAACTGAATG
GGGCTGATGACGTCGTAGGAGCGCTGCTTCTTGTGCACTGTCTGCATGGA
CATGGGAATGTCCTGCGACATGCAGGTGTTCATGGCGTCCAGATCAATGG
CCGAGCTGGCCGGGGCGCCGCTGGGGAACTCTTGGGCACTGTTCTCTGGG
AAAGTGGGCCCAGCGGGCTGCTGTTGGCTGCTCGGATTGGCATTCGGATT
GTTGGCTGCTGCTGCGTCGCTCCGGGCGCGCACATTGTAGTTCTGCTGCA
GCGAGGCGGGGCTGCTGCGGGCTCGGGAGTGATGTATCGCCAGGCGGCTG
TGCTGGGGAGACGGCTGAATCTGGAGCTGGGGGATGGCGGCGATGGGCGA
CTGGCCATCTGGCTGCTGGACGATGGACGCCTTGTTCCCGATGTTGATGC
TCGACTGGGAGCCCGCGTCGTAGGTGGAGTCGGCGCTGTTGGCCCGCGAG
TGCGAGGGCGCCGGGGGCGTGAAGAAAGAGTTGGGCAGCTTCCGCATGC
BS06655.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4005-PB | 1101 | CG4005-RB | 269..1101 | 849..17 | 4140 | 99.8 | Minus |
| CG4005-PA | 1101 | CG4005-RA | 269..1101 | 849..17 | 4140 | 99.8 | Minus |
| CG4005-PC | 1257 | CG4005-RC | 269..944 | 849..174 | 3355 | 99.8 | Minus |
| CG4005-PC | 1257 | CG4005-RC | 1100..1257 | 174..17 | 790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RD | 1369 | CG4005-RD | 439..1271 | 849..17 | 4150 | 99.9 | Minus |
| yki-RF | 1525 | CG4005-RF | 439..1114 | 849..174 | 3365 | 99.9 | Minus |
| yki-RG | 1460 | CG4005-RG | 374..1049 | 849..174 | 3365 | 99.9 | Minus |
| yki-RF | 1525 | CG4005-RF | 1262..1427 | 181..17 | 805 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068047 | 267..849 | 2900 | 99.8 | Plus |
| 2R | 25286936 | 2R | 24066073..24066180 | 17..124 | 540 | 100 | Plus |
| 2R | 25286936 | 2R | 24067163..24067254 | 175..266 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 24066261..24066314 | 122..175 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:56:08 has no hits.
BS06655.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:06 Download gff for
BS06655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PA | 269..1101 | 17..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:33 Download gff for
BS06655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PA | 269..1101 | 17..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:49:07 Download gff for
BS06655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 439..1271 | 17..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:28 Download gff for
BS06655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 439..1271 | 17..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:28 Download gff for
BS06655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24066073..24066177 | 17..121 | 100 | <- | Plus |
| 2R | 24066261..24066313 | 122..174 | 100 | <- | Plus |
| 2R | 24067163..24067254 | 175..266 | 100 | <- | Plus |
| 2R | 24067465..24068047 | 267..849 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:49:07 Download gff for
BS06655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19953596..19953700 | 17..121 | 100 | <- | Plus |
| arm_2R | 19953784..19953836 | 122..174 | 100 | <- | Plus |
| arm_2R | 19954686..19954777 | 175..266 | 100 | <- | Plus |
| arm_2R | 19954988..19955570 | 267..849 | 99 | | Plus |
BS06655.5prime Sequence
861 bp (813 high quality bases) assembled on 2005-12-04
> BS06655.5prime
GAAGTTATCAGTCGACATGTGCGCGTGCCTAATCGCTAAGATAATTCTAT
GTAGTTTTCGTTTGTATACAATAAGTGCCTTTTATATGTTAACGACGATG
TCAGCCAGCAGCAATACAAACAGCCTGATCGAGAAGGAGATCGACGACGA
GGACATGCTTTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGGTCAACC
AGGACACGGACGACAACCTGCAGGCGCTATTCGACAGCGTCCTGAATCCG
GGTGACGCCAAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCC
CAACTCCTTCTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCG
CCGACTCCACCTACGACGCGGGCTCCCAGTCGAGCATCAACATCGGGAAC
AAGGCGTCCATCGTCCAGCAGCCAGATGGCCAGTCGCCCATCGCCGCCAT
CCCCCAGCTCCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGGCGATAC
ATCACTCCCGAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAACTACAAT
GTGCGCGCCCGGAGCGACGCAGCAGCAGCCAACAATCCGAATGCCAATCC
GAGCAGCCAACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCC
AAGAGTTCCCCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTGGACGCC
ATGAACACCTGCATGTCGCAGGACATTCCCATGTCCATGCAGACAGTGCA
CAAGAAGCAGCGCTCCTACGACGTCATCAGCCCCATTCAGTTGAACCGCC
AACTAGGCGCCTTGCCGCCGGGATGGGAGCAAGCAAGACCAATGATGGCC
AGATCTACTAC
BS06655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4005-PB | 1101 | CG4005-RB | 1..818 | 17..834 | 4090 | 100 | Plus |
| CG4005-PA | 1101 | CG4005-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
| CG4005-PC | 1257 | CG4005-RC | 1..818 | 17..834 | 4090 | 100 | Plus |
| CG4005-PB | 1101 | CG4005-RB | 819..846 | 834..861 | 140 | 100 | Plus |
| CG4005-PA | 1101 | CG4005-RA | 819..846 | 834..861 | 140 | 100 | Plus |
| CG4005-PC | 1257 | CG4005-RC | 819..846 | 834..861 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RF | 1525 | CG4005-RF | 171..1016 | 17..861 | 4205 | 99.9 | Plus |
| yki-RD | 1369 | CG4005-RD | 171..1016 | 17..861 | 4205 | 99.9 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..951 | 17..861 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067470..24068315 | 861..17 | 4180 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:00:38 has no hits.
BS06655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:07 Download gff for
BS06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:35 Download gff for
BS06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PC | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:30:23 Download gff for
BS06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 101..951 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:45 Download gff for
BS06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 101..951 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:45 Download gff for
BS06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24067470..24068320 | 9..861 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:30:23 Download gff for
BS06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19954993..19955843 | 9..861 | 99 | | Minus |
BS06655.complete Sequence
1133 bp (1133 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638795
> BS06655.complete
GAAGTTATCAGTCGACATGTGCGCGTGCCTAATCGCTAAGATAATTCTAT
GTAGTTTTCGTTTGTATACAATAAGTGCCTTTTATATGTTAACGACGATG
TCAGCCAGCAGCAATACAAACAGCCTGATCGAGAAGGAGATCGACGACGA
GGACATGCTTTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGGTCAACC
AGGACACGGACGACAACCTGCAGGCGCTATTCGACAGCGTCCTGAATCCG
GGTGACGCCAAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCC
CAACTCCTTCTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCG
CCGACTCCACCTACGACGCGGGCTCCCAGTCGAGCATCAACATCGGGAAC
AAGGCGTCCATCGTCCAGCAGCCAGATGGCCAGTCGCCCATCGCCGCCAT
CCCCCAGCTCCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGGCGATAC
ATCACTCCCGAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAACTACAAT
GTGCGCGCCCGGAGCGACGCAGCAGCAGCCAACAATCCGAATGCCAATCC
GAGCAGCCAACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCC
AAGAGTTCCCCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTGGACGCC
ATGAACACCTGCATGTCGCAGGACATTCCCATGTCCATGCAGACAGTGCA
CAAGAAGCAGCGCTCCTACGACGTCATCAGCCCCATTCAGTTGAACCGCC
AACTAGGCGCCTTGCCGCCGGGATGGGAGCAAGCCAAGACCAATGATGGC
CAGATCTACTACTTGAATCATACTACAAAATCTACGCAGTGGGAGGATCC
CAGAATCCAATATCGCCAGCAGCAGCAAATCTTGATGGCCGAGCGAATAA
AGCAGAATGAATCTGGGCTTAGCGTGCTCGACTGCCCAGATAACTTAGTG
TCTTCCCTCCAGATTGAGGATAATCTTTGCAGTAACTTGTTCAATGACGC
ACAGGCCATTGTAAATCCGCCGTCTTCCCACAAACCTGACGATTTGGAAT
GGTATAAAATTAATTAAAAGCTTTCTAGACCAT
BS06655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RD | 1032 | CG4005-PD | 1..1032 | 86..1117 | 5160 | 100 | Plus |
| yki-RF | 1188 | CG4005-PF | 1..875 | 86..960 | 4375 | 100 | Plus |
| yki-RG | 1188 | CG4005-PG | 1..875 | 86..960 | 4375 | 100 | Plus |
| yki-RF | 1188 | CG4005-PF | 1031..1188 | 960..1117 | 790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RD | 1369 | CG4005-RD | 171..1271 | 17..1117 | 5505 | 100 | Plus |
| yki-RF | 1525 | CG4005-RF | 171..1114 | 17..960 | 4720 | 100 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..1049 | 17..960 | 4720 | 100 | Plus |
| yki-RF | 1525 | CG4005-RF | 1270..1427 | 960..1117 | 790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 867..17 | 4255 | 100 | Minus |
| 2R | 25286936 | 2R | 24066073..24066180 | 1117..1010 | 540 | 100 | Minus |
| 2R | 25286936 | 2R | 24067163..24067254 | 959..868 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 24066261..24066314 | 1012..959 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:59:26 has no hits.
BS06655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:06 Download gff for
BS06655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 1..1032 | 86..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:58 Download gff for
BS06655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1271 | 9..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:38 Download gff for
BS06655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 171..1269 | 17..1115 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:06 Download gff for
BS06655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1271 | 9..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:52 Download gff for
BS06655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 171..1269 | 17..1115 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:52 Download gff for
BS06655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24066075..24066177 | 1013..1115 | 100 | <- | Minus |
| 2R | 24066261..24066313 | 960..1012 | 100 | <- | Minus |
| 2R | 24067163..24067254 | 868..959 | 100 | <- | Minus |
| 2R | 24067465..24068315 | 17..867 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:38 Download gff for
BS06655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19953784..19953836 | 960..1012 | 100 | <- | Minus |
| arm_2R | 19954686..19954777 | 868..959 | 100 | <- | Minus |
| arm_2R | 19953598..19953700 | 1013..1115 | 100 | <- | Minus |
| arm_2R | 19954988..19955838 | 17..867 | 100 | | Minus |
BS06655.pep Sequence
Translation from 16 to 1116
> BS06655.pep
MCACLIAKIILCSFRLYTISAFYMLTTMSASSNTNSLIEKEIDDEDMLSP
IKSNNLVVRVNQDTDDNLQALFDSVLNPGDAKRPLQLPLRMRKLPNSFFT
PPAPSHSRANSADSTYDAGSQSSINIGNKASIVQQPDGQSPIAAIPQLQI
QPSPQHSRLAIHHSRARSSPASLQQNYNVRARSDAAAANNPNANPSSQQQ
PAGPTFPENSAQEFPSGAPASSAIDLDAMNTCMSQDIPMSMQTVHKKQRS
YDVISPIQLNRQLGALPPGWEQAKTNDGQIYYLNHTTKSTQWEDPRIQYR
QQQQILMAERIKQNESGLSVLDCPDNLVSSLQIEDNLCSNLFNDAQAIVN
PPSSHKPDDLEWYKIN*
BS06655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-PD | 343 | CG4005-PD | 1..343 | 24..366 | 1778 | 100 | Plus |
| yki-PF | 395 | CG4005-PF | 1..395 | 24..366 | 1712 | 86.6 | Plus |
| yki-PG | 395 | CG4005-PG | 1..395 | 24..366 | 1712 | 86.6 | Plus |
