Clone Sequence Records
BS06660.3prime Sequence
892 bp (816 high quality bases) assembled on 2005-12-04
> BS06660.3prime
ATGGTCTAGAAAGCTTTTACGCCCCATTGTCATCATCATCATCGGTGAAT
AGCATAGAAGCCAACACATCGCTGGCCATTTGTGCCTTGTGGAGCTGCGT
CAGCTGCTCCCGGCGCTGCTCCACACTGGCTGCCGGCTCACTCAAAACCT
TCCAGGCGTCCATCTCCTCGAACAGACTGTTTAGCAACTCCATCTCCATG
TCGGCAGGCGACATGTTGTGCTCAGCGACCTCTAGCACATTGAGGTTGCA
GTGCAGCTGGAGGAGATCGCGCGTCAGGCGATGCAGTAGCAGACGCAATC
GATCGTCCGTTCTGGCGTACACATGCCAATGCTTTCCGGGATCGTCGCGA
AGCAGCAAGGTGTCACACCACTGTGACTGCGGCTGGCGATTGTAGAAAAT
ACGCTGGACAGGATCGGCGGCGATGTTGGAAGACTGAAAGTGAGACCCAG
GCTCACTGTCGTCCAGCAAGTCGGAAGTCGGCTCCTTGTTTGCTTCCTGG
GCTTGGATCAACTGAAACTGCAGCGTGGAGACGAGTAGCTGCTCGAATGT
CGTGCAATCCTGGGCCGACTGGAACTCCAATTTCAGGGAGCAACGTGCCG
TGTGCGTCATAATAACGGCCAAAAAGTCTTGGTGCAGCGTGGCGGGCGAA
AATGTGGGTGCCAACGATTCTGTTTTATCGAGCAGTTTCTTCACATCGAA
GGTAATGAGATGGATTTGCCTAGGGGATGCATCCTCGCCCATCTCGTACG
TTGCCATCAATATGAGTTTCTCTGCCTCAAGAAGATCGACCAGACGCANG
CTCACTACCATCGCGGCAGATCGTTCCGGCGGTAGTATTCTTTCCTTCTC
CACCGGTCGCCATTTGAGACGCCTGCTATGCTGATCCTGGCA
BS06660.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-PA | 1860 | CG9114-RA | 985..1860 | 892..17 | 4361 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-RA | 2315 | CG9114-RA | 1197..2073 | 892..16 | 4374 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15331026..15331487 | 16..477 | 2310 | 100 | Plus |
| X | 23542271 | X | 15331544..15331958 | 478..892 | 2064 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:59:28 has no hits.
BS06660.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:17 Download gff for
BS06660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-PA | 986..1860 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:49 Download gff for
BS06660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-PA | 986..1860 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:47:16 Download gff for
BS06660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 1045..1926 | 10..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:26 Download gff for
BS06660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 1198..2079 | 10..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:26 Download gff for
BS06660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15331023..15331487 | 13..477 | 99 | <- | Plus |
| X | 15331544..15331957 | 478..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:47:16 Download gff for
BS06660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15225056..15225520 | 13..477 | 99 | <- | Plus |
| arm_X | 15225577..15225990 | 478..891 | 99 | | Plus |
BS06660.5prime Sequence
884 bp (880 high quality bases) assembled on 2005-12-04
> BS06660.5prime
GAAGTTATCAGTCGACATGCTGCCGTTTGTCCAGGAGAATGTGCCGGAGA
TGCTGCTCCAGCCGGCCCGGTTGGCCTTCTGCGCCAATCTTCACGTGGGC
CGACCGCGGGATGACCCCACTACATTGGTTTTAGCGAGAAACCTAAAGTT
CTACGAATTCCGGCGCAAGGATCTGGTGCACTACATCGATTTGAAGGTCA
CGAAACTAAAGCAAATAGCCACCCAACTGGAGGCCTACGACGGACCGGTT
TGTCCCTTTCTGTCCAAGCAGGAACCCACTGACGAAAAGGTGGACTGGAG
CATGCTGGATCCGCCGGAGGATTTGCCCCTCAAATTTGGAAAGTTTGTGT
GGCAACGGGAGGGCATCTACCTGTTAATTCAGTGCTGGAAGCATCTCGTC
GTCCTAAAGAGGCCCAAGGATCACGGGGCCAACTTCGAACTGGTGGCGGA
TCACAAGGATGTGGTGGACTACCAGATGGTCGAAGGTCCCATTTCCTTCC
AGGCCGTTGTGGAACTGGAGTTCGGCAATGGCAAGCGTCAGCGTTGTGAT
TTCCAGGAGGATTTCTTAAATGAGGAGCCCAGCACGTCCAAAAATGCGGG
CTTGCCCGCGAAGGATTTCGAGAACCTGCTGCAGGAGGTGCACCGCGCCC
AAGCCGAGCTCGACAGCCAGCGAATGCAAAACCAGAAGGAATTAGCCCAC
GTCCAAGACCTTCTATACTTCGGCACGCCGGGCCAGCGTTCGCTGCTCCT
TGAGGAGAAGCAGCCGCTCCGACGACTCGGCGATGTATGGACTCGGATCT
GCGGCGATTATTTTGTTTGTGGCACTCTGCTAGTCAACATAACTGGCACC
AATCGCCTCACCATAGTCAAGGAGTTGTATCCGA
BS06660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-PA | 1860 | CG9114-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-RA | 2315 | CG9114-RA | 212..1080 | 16..884 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15332075..15332943 | 884..16 | 4345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:28:22 has no hits.
BS06660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:18 Download gff for
BS06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:51 Download gff for
BS06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:11:15 Download gff for
BS06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 55..926 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:45 Download gff for
BS06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 208..1079 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:45 Download gff for
BS06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15332076..15332947 | 9..883 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:11:15 Download gff for
BS06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15226109..15226980 | 9..883 | 99 | | Minus |
BS06660.complete Sequence
1892 bp assembled on 2008-08-15
GenBank Submission: KX806226
> BS06660.complete
GAAGTTATCAGTCGACATGCTGCCGTTTGTCCAGGAGAATGTGCCGGAGA
TGCTGCTCCAGCCGGCCCGGTTGGCCTTCTGCGCCAATCTTCACGTGGGC
CGACCGCGGGATGACCCCACTACATTGGTTTTAGCGAGAAACCTAAAGTT
CTACGAATTCCGGCGCAAGGATCTGGTGCACTACATCGATTTGAAGGTCA
CGAAACTAAAGCAAATAGCCACCCAACTGGAGGCCTACGACGGACCGGTT
TGTCCCTTTCTGTCCAAGCAGGAACCCACTGACGAAAAGGTGGACTGGAG
CATGCTGGATCCGCCGGAGGATTTGCCCCTCAAATTTGGAAAGTTTGTGT
GGCAACGGGAGGGCATCTACCTGTTAATTCAGTGCTGGAAGCATCTCGTC
GTCCTAAAGAGGCCCAAGGATCACGGGGCCAACTTCGAACTGGTGGCGGA
TCACAAGGATGTGGTGGACTACCAGATGGTCGAAGGTCCCATTTCCTTCC
AGGCCGTTGTGGAACTGGAGTTCGGCAATGGCAAGCGTCAGCGTTGTGAT
TTCCAGGAGGATTTCTTAAATGAGGAGCCCAGCACGTCCAAAAATGCGGG
CTTGCCCGCGAAGGATTTCGAGAACCTGCTGCAGGAGGTGCACCGCGCCC
AAGCCGAGCTCGACAGCCAGCGAATGCAAAACCAGAAGGAATTAGCCCAC
GTCCAAGACCTTCTATACTTCGGCACGCCGGGCCAGCGTTCGCTGCTCCT
TGAGGAGAAGCAGCCGCTCCGACGACTCGGCGATGTATGGACTCGGATCT
GCGGCGATTATTTTGTTTGTGGCACTCTGCTAGTCAACATAACTGGCACC
AATCGCCTCACCATAGTCAAGGAGTTGTATCCGATTGTTGTAATCGAACC
ACACACCGACTTTAGCGTGGAGCACCGCCTGTACGAGCTGCCTCTGCAGG
CGGATGGCCAACCACCCGAGGACTACGACCAGCTGGCGCAGTTTTGGGCC
TGCCAGGATCAGCATAGCAGGCGTCTCAAATGGCGACCGGTGGAGAAGGA
AAGAATACTACCGCCGGAACGATCTGCCGCGATGGTAGTGAGCCTGCGTC
TGGTCGATCTTCTTGAGGCAGAGAAACTCATATTGATGGCAACGTACGAG
ATGGGCGAGGATGCATCCCCTAGGCAAATCCATCTCATTACCTTCGATGT
GAAGAAACTGCTCGATAAAACAGAATCGTTGGCACCCACATTTTCGCCCG
CCACGCTGCACCAAGACTTTTTGGCCGTTATTATGACGCACACGGCACGT
TGCTCCCTGAAATTGGAGTTCCAGTCGGCCCAGGATTGCACGACATTCGA
GCAGCTACTCGTCTCCACGCTGCAGTTTCAGTTGATCCAAGCCCAGGAAG
CAAACAAGGAGCCGACTTCCGACTTGCTGGACGACAGTGAGCCTGGGTCT
CACTTTCAGTCTTCCAACATCGCCGCCGATCCTGTCCAGCGTATTTTCTA
CAATCGCCAGCCGCAGTCACAGTGGTGTGACACCTTGCTGCTTCGCGACG
ATCCCGGAAAGCATTGGCATGTGTACGCCAGAACGGACGATCGATTGCGT
CTGCTACTGCATCGCCTGACGCGCGATCTCCTCCAGCTGCACTGCAACCT
CAATGTGCTAGAGGTCGCTGAGCACAACATGTCGCCTGCCGACATGGAGA
TGGAGTTGCTAAACAGTCTGTTCGAGGAGATGGACGCCTGGAAGGTTTTG
AGTGAGCCGGCAGCCAGTGTGGAGCAGCGCCGGGAGCAGCTGACGCAGCT
CCACAAGGCACAAATGGCCAGCGATGTGTTGGCTTCTATGCTATTCACCG
ATGATGATGATGACAATGGGGCGTAAAAGCTTTCTAGACCAT
BS06660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-RA | 1860 | CG9114-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-RA | 2315 | CG9114-RA | 212..2073 | 16..1877 | 9310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15331544..15332943 | 1415..16 | 7000 | 100 | Minus |
| X | 23542271 | X | 15331026..15331487 | 1877..1416 | 2310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:19:11 has no hits.
BS06660.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:26:21 Download gff for
BS06660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 494..2365 | 9..1883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:33 Download gff for
BS06660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 60..1917 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:39 Download gff for
BS06660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 499..2356 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:41 Download gff for
BS06660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 213..2070 | 17..1874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:41 Download gff for
BS06660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15331029..15331487 | 1416..1874 | 100 | <- | Minus |
| X | 15331544..15332942 | 17..1415 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:33 Download gff for
BS06660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15225062..15225520 | 1416..1874 | 100 | <- | Minus |
| arm_X | 15225577..15226975 | 17..1415 | 100 | | Minus |
BS06660.pep Sequence
Translation from 16 to 1875
> BS06660.pep
MLPFVQENVPEMLLQPARLAFCANLHVGRPRDDPTTLVLARNLKFYEFRR
KDLVHYIDLKVTKLKQIATQLEAYDGPVCPFLSKQEPTDEKVDWSMLDPP
EDLPLKFGKFVWQREGIYLLIQCWKHLVVLKRPKDHGANFELVADHKDVV
DYQMVEGPISFQAVVELEFGNGKRQRCDFQEDFLNEEPSTSKNAGLPAKD
FENLLQEVHRAQAELDSQRMQNQKELAHVQDLLYFGTPGQRSLLLEEKQP
LRRLGDVWTRICGDYFVCGTLLVNITGTNRLTIVKELYPIVVIEPHTDFS
VEHRLYELPLQADGQPPEDYDQLAQFWACQDQHSRRLKWRPVEKERILPP
ERSAAMVVSLRLVDLLEAEKLILMATYEMGEDASPRQIHLITFDVKKLLD
KTESLAPTFSPATLHQDFLAVIMTHTARCSLKLEFQSAQDCTTFEQLLVS
TLQFQLIQAQEANKEPTSDLLDDSEPGSHFQSSNIAADPVQRIFYNRQPQ
SQWCDTLLLRDDPGKHWHVYARTDDRLRLLLHRLTRDLLQLHCNLNVLEV
AEHNMSPADMEMELLNSLFEEMDAWKVLSEPAASVEQRREQLTQLHKAQM
ASDVLASMLFTDDDDDNGA*
BS06660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-PA | 619 | CG9114-PA | 1..619 | 1..619 | 3250 | 100 | Plus |
