Clone Sequence Records
BS06662.complete Sequence
1883 bp assembled on 2009-12-07
GenBank Submission: KX801508
> BS06662.complete
GAAGTTATCAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGC
TGCAAAAGGCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCG
ACGGATGAGGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCA
CGCCAACCGCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGC
ACCTGGAAAAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTT
CTGTACGAAGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTT
CAAGAGCAGGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCA
GCGAGCTGCCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAG
CAGCACCTTCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGA
CAAGCAGTACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACA
ATCTTAGCCACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACT
CTGCAGAGCGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGA
CGTGGAATGGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCT
ACGTTTTGTTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAG
TCCTTCACCGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCAAATGCAGGA
GTTGCTTAAGGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAA
AGGAAAGTGGAGACCGGGAAAAGATTGCCGATAAAAACAACTTGGACGAC
TCACTCGCTCCTCACCCACTACACATTTGTTTGACGATTGGAGCGGCTGG
ATCGAATCAGCTCGTTTTGCAGATTCGCTACTTTGATTTTATCAAGTGTG
CCACTGTCTGGGGCCAACTTAACTGCTCCAGGAATGCCAACGGCCAGGGT
GACACAAACTTTGTTCACCACCTATTGCGGCATTTGTACCCCAATGACTT
GGGCAATGAATTACCCATTCCGGGAATCCAATACGAGCTACGAAGCTCGG
ATTTAACAGCCGAGGAATGTGTGCGCTACCTCAAGGCCAAGGACTACGGA
AAACCCTTCTGTTGGCTGCAAAGTATGTGCTCGATTGCAACCGTCAACAG
TTCGATGCTGTACAAACACGAACTGAACTTGAATAAGAACAACAAGGAGA
TTATTGACCGCATTGCCAGGCGCTTGAACTCTTGGCAGCGTTTAAGCCAG
CAGATTCGCGGGCTGACCTTCAAGGATATCGATTTGTATAGCTTGCAGGA
GAACATCTATCCAGCCGGCCTGTCGTGCAGTCTCGTCCAATGGACTGCCA
TCACACATGAGGAGCTTCACTCGCAAATTTCAGACGCACTGAATTCTTCG
TCAGCGGACAAGGGTATTACGTACAACTCTTACCGCGCTGTCATCGTCCG
GGGATCGGCCAAAATGGAGTGCTTTATTAGAATACCGAGTAACTATCCAC
TGGAAATGCCTCTATGGATTCTGAATGTGCACTGGAACGGATGCCTTACC
GCGCAAAACAATTCGGCGATCAAGATGATGGAGTTCTGGACCAACTCCCT
GCAGCCCAAACATTTGGAGCCCAACGACTGCATCCTGTACGCGCAGCTCT
TCCGCACCATCTACAGCTTCGATATATTCCTCGAAACCGAGGGATCCATG
CAAAACACCATTGAGTACAACAAGGAGAAGCCTTACATAAGCGCCTTCGC
CAAGCGGAGCCGCTCACGCCCCTACAAATACATCAAGAAGGGATCGGTCT
ACGCGTTCAAGCAGTGAAAGCTTTCTAGACCAT
BS06662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-RA | 1851 | CG2980-PA | 1..1851 | 17..1867 | 9255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-RA | 2035 | CG2980-RA | 74..1924 | 17..1867 | 9255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23954297..23955093 | 90..886 | 3985 | 100 | Plus |
2R | 25286936 | 2R | 23955458..23955996 | 1086..1624 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 23956051..23956295 | 1623..1867 | 1225 | 100 | Plus |
2R | 25286936 | 2R | 23955147..23955260 | 886..999 | 570 | 100 | Plus |
2R | 25286936 | 2R | 23955318..23955413 | 999..1094 | 450 | 97.9 | Plus |
2R | 25286936 | 2R | 23954164..23954239 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:08:57 has no hits.
BS06662.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:22 Download gff for
BS06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 72..1921 | 17..1866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:59 Download gff for
BS06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 74..1923 | 17..1866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:51 Download gff for
BS06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 72..1921 | 17..1866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:52 Download gff for
BS06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 74..1923 | 17..1866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:52 Download gff for
BS06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23954164..23954238 | 17..91 | 100 | -> | Plus |
2R | 23954299..23955093 | 92..886 | 100 | -> | Plus |
2R | 23955148..23955260 | 887..999 | 100 | -> | Plus |
2R | 23955319..23955406 | 1000..1087 | 100 | -> | Plus |
2R | 23955460..23955996 | 1088..1624 | 100 | -> | Plus |
2R | 23956053..23956294 | 1625..1866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:59 Download gff for
BS06662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19841687..19841761 | 17..91 | 100 | -> | Plus |
arm_2R | 19841822..19842616 | 92..886 | 100 | -> | Plus |
arm_2R | 19842671..19842783 | 887..999 | 100 | -> | Plus |
arm_2R | 19842842..19842929 | 1000..1087 | 100 | -> | Plus |
arm_2R | 19842983..19843519 | 1088..1624 | 100 | -> | Plus |
arm_2R | 19843576..19843817 | 1625..1866 | 100 | | Plus |
BS06662.3prime Sequence
919 bp (838 high quality bases) assembled on 2005-12-04
> BS06662.3prime
ATGGTCTAGAAAGCTTTCACTGCTTGAACGCGTAGACCGATCCCTTCTTG
ATGTATTTGTAGGGGCGTGAGCGGCTCCGCTTGGCGAAGGCGCTTATGTA
AGGCTTCTCCTTGTTGTACTCAATGGTGTTTTGCATGGATCCCTCGGTTT
CGAGGAATATATCGAAGCTGTAGATGGTGCGGAAGAGCTGCGCGTACAGG
ATGCAGTCGTTGGGCTCCAAATGTTTGGGCTGCAGGGAGTTGGTCCAGAA
CTCCATCATCTTGATCGCCGAATTGTTTTGCGCGGTAAGGCATCCGTTCC
AGTGCACATTCAGAATCCATAGAGGCATTTCCAGTGGATAGTTACTCGGT
ATTCTAATAAAGCACTCCATTTTGGCCGATCCCCGGACGATGACAGCGCG
GTAAGAGTTGTACGTAATACCCTTGTCCGCTGACGAAGAATTCAGTGCGT
CTGAAATTTGCGAGTGAAGCTCCTCATGTGTGATGGCAGTCCATTGGACG
AGACTGCACGACAGGCCGGCTGGATAGATGTTCTCCTGCAAGCTATACAA
ATCGATATCCTTGAAGGTCAGCCCGCGAATCTGCTGGCTTAAACGCTGCC
AAGAGTTCAAGCGCCTGGCAATGCGGTCAATAATCTCCTTGTTGTTCTTA
TTCAAGTTCAGTTCGTGTTTGTACAGCATCGAACTGTTGACGGTTGCAAT
CGAGCACATACTTTGCAGCCAACAGAAGGGTTTTCCGTAGTCCTTGGCCT
TGAGGTAGCGCACACATTCCTCGGCTGTTAAATCCGAGCTTCGTAGCTCG
TATTGGATTCCCGGAATGGGTAATTCATTGCCCAAGTCATTGGGGTACAA
ATGCCGCAATAGGTGGTGAACAAAGTTTGTGTCACCCTGGCCGTTGGCAT
TCCTGGAGCAGTTAAGTTG
BS06662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2980-PA | 1851 | thoc5-RA | 949..1851 | 919..17 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-RA | 2035 | CG2980-RA | 1022..1924 | 919..17 | 4515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23955458..23955996 | 798..260 | 2695 | 100 | Minus |
2R | 25286936 | 2R | 23956051..23956295 | 261..17 | 1225 | 100 | Minus |
2R | 25286936 | 2R | 23955318..23955413 | 885..790 | 450 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:22:58 has no hits.
BS06662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:19 Download gff for
BS06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-PA | 949..1851 | 17..919 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:52 Download gff for
BS06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2980-PA | 949..1851 | 17..919 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:05 Download gff for
BS06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 1022..1929 | 11..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:18 Download gff for
BS06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 1022..1929 | 11..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:18 Download gff for
BS06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23955226..23955260 | 885..919 | 100 | -> | Minus |
2R | 23955319..23955406 | 797..884 | 100 | -> | Minus |
2R | 23955460..23955996 | 260..796 | 100 | -> | Minus |
2R | 23956053..23956300 | 11..259 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:05 Download gff for
BS06662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19842749..19842783 | 885..919 | 100 | -> | Minus |
arm_2R | 19842842..19842929 | 797..884 | 100 | -> | Minus |
arm_2R | 19842983..19843519 | 260..796 | 100 | -> | Minus |
arm_2R | 19843576..19843823 | 11..259 | 99 | | Minus |
BS06662.5prime Sequence
884 bp (756 high quality bases) assembled on 2005-12-04
> BS06662.5prime
GAAGTTATCAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGC
TGCAAAAGGCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCG
ACGGATGAGGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCA
CGCCAACCGCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGC
ACCTGGAAAAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTT
CTGTACGAAGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTT
CAAGAGCAGGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCA
GCGAGCTGCCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAG
CAGCACCTTCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGA
CAAGCAGTACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACA
ATCTTAGCCACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACT
CTGCAGAGCGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGA
CGTGGAATGGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCT
ACGTTTTGTTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAG
TCCTTCACCGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCANATGCAGGA
GTTGCTTAAGGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAA
AGGAAAGTGGAGACCGGGAAAAGATTGCCGATAAAAACAACTTGGACGAC
TCACTCGCTCCTCACCCACTACACATTTGTTTGA
BS06662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2980-PA | 1851 | thoc5-RA | 1..868 | 17..884 | 4321 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-RA | 2035 | CG2980-RA | 74..941 | 17..884 | 4329 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23954297..23955091 | 90..884 | 3964 | 99.9 | Plus |
2R | 25286936 | 2R | 23954164..23954239 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:29:31 has no hits.
BS06662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:20 Download gff for
BS06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:53 Download gff for
BS06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2980-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:11:57 Download gff for
BS06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 74..940 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:48 Download gff for
BS06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 74..940 | 17..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:48 Download gff for
BS06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23954164..23954238 | 17..91 | 100 | -> | Plus |
2R | 23954299..23955090 | 92..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:11:57 Download gff for
BS06662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19841687..19841761 | 17..91 | 100 | -> | Plus |
arm_2R | 19841822..19842613 | 92..883 | 99 | | Plus |
BS06662.pep Sequence
Translation from 16 to 1866
> BS06662.pep
METILNTQFDQLQKAIEGIKEAKSKGQSTDEARIATTLMFVALKHANREV
KHKIKAGRDKLHLEKCKVDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDT
SLELLSEAEYSSELPDMPNDAEELSSHKQHLHRLDCELRLRKALDKQYSA
LLSSKQELLQDNLSHAQRYVSFAPALRTLQSATKPLHDALQLSLDVEWKL
SAVVKYLPKPLYVLFIVLQSLQRVSEEQSFTAEVVGYESEAQMQELLKEK
KCSTLNYRQTKKESGDREKIADKNNLDDSLAPHPLHICLTIGAAGSNQLV
LQIRYFDFIKCATVWGQLNCSRNANGQGDTNFVHHLLRHLYPNDLGNELP
IPGIQYELRSSDLTAEECVRYLKAKDYGKPFCWLQSMCSIATVNSSMLYK
HELNLNKNNKEIIDRIARRLNSWQRLSQQIRGLTFKDIDLYSLQENIYPA
GLSCSLVQWTAITHEELHSQISDALNSSSADKGITYNSYRAVIVRGSAKM
ECFIRIPSNYPLEMPLWILNVHWNGCLTAQNNSAIKMMEFWTNSLQPKHL
EPNDCILYAQLFRTIYSFDIFLETEGSMQNTIEYNKEKPYISAFAKRSRS
RPYKYIKKGSVYAFKQ*
BS06662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-PA | 616 | CG2980-PA | 1..616 | 1..616 | 3198 | 100 | Plus |