Clone BS06662 Report

Search the DGRC for BS06662

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptthoc5-RA
Protein status:BS06662.pep: full length peptide match
Sequenced Size:1883

Clone Sequence Records

BS06662.complete Sequence

1883 bp assembled on 2009-12-07

GenBank Submission: KX801508

> BS06662.complete
GAAGTTATCAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGC
TGCAAAAGGCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCG
ACGGATGAGGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCA
CGCCAACCGCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGC
ACCTGGAAAAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTT
CTGTACGAAGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTT
CAAGAGCAGGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCA
GCGAGCTGCCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAG
CAGCACCTTCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGA
CAAGCAGTACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACA
ATCTTAGCCACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACT
CTGCAGAGCGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGA
CGTGGAATGGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCT
ACGTTTTGTTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAG
TCCTTCACCGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCAAATGCAGGA
GTTGCTTAAGGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAA
AGGAAAGTGGAGACCGGGAAAAGATTGCCGATAAAAACAACTTGGACGAC
TCACTCGCTCCTCACCCACTACACATTTGTTTGACGATTGGAGCGGCTGG
ATCGAATCAGCTCGTTTTGCAGATTCGCTACTTTGATTTTATCAAGTGTG
CCACTGTCTGGGGCCAACTTAACTGCTCCAGGAATGCCAACGGCCAGGGT
GACACAAACTTTGTTCACCACCTATTGCGGCATTTGTACCCCAATGACTT
GGGCAATGAATTACCCATTCCGGGAATCCAATACGAGCTACGAAGCTCGG
ATTTAACAGCCGAGGAATGTGTGCGCTACCTCAAGGCCAAGGACTACGGA
AAACCCTTCTGTTGGCTGCAAAGTATGTGCTCGATTGCAACCGTCAACAG
TTCGATGCTGTACAAACACGAACTGAACTTGAATAAGAACAACAAGGAGA
TTATTGACCGCATTGCCAGGCGCTTGAACTCTTGGCAGCGTTTAAGCCAG
CAGATTCGCGGGCTGACCTTCAAGGATATCGATTTGTATAGCTTGCAGGA
GAACATCTATCCAGCCGGCCTGTCGTGCAGTCTCGTCCAATGGACTGCCA
TCACACATGAGGAGCTTCACTCGCAAATTTCAGACGCACTGAATTCTTCG
TCAGCGGACAAGGGTATTACGTACAACTCTTACCGCGCTGTCATCGTCCG
GGGATCGGCCAAAATGGAGTGCTTTATTAGAATACCGAGTAACTATCCAC
TGGAAATGCCTCTATGGATTCTGAATGTGCACTGGAACGGATGCCTTACC
GCGCAAAACAATTCGGCGATCAAGATGATGGAGTTCTGGACCAACTCCCT
GCAGCCCAAACATTTGGAGCCCAACGACTGCATCCTGTACGCGCAGCTCT
TCCGCACCATCTACAGCTTCGATATATTCCTCGAAACCGAGGGATCCATG
CAAAACACCATTGAGTACAACAAGGAGAAGCCTTACATAAGCGCCTTCGC
CAAGCGGAGCCGCTCACGCCCCTACAAATACATCAAGAAGGGATCGGTCT
ACGCGTTCAAGCAGTGAAAGCTTTCTAGACCAT

BS06662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-RA 1851 CG2980-PA 1..1851 17..1867 9255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-RA 2035 CG2980-RA 74..1924 17..1867 9255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23954297..23955093 90..886 3985 100 Plus
2R 25286936 2R 23955458..23955996 1086..1624 2695 100 Plus
2R 25286936 2R 23956051..23956295 1623..1867 1225 100 Plus
2R 25286936 2R 23955147..23955260 886..999 570 100 Plus
2R 25286936 2R 23955318..23955413 999..1094 450 97.9 Plus
2R 25286936 2R 23954164..23954239 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:08:57 has no hits.

BS06662.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:22 Download gff for BS06662.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 72..1921 17..1866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:59 Download gff for BS06662.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 74..1923 17..1866 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:51 Download gff for BS06662.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 72..1921 17..1866 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:52 Download gff for BS06662.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 74..1923 17..1866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:52 Download gff for BS06662.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23954164..23954238 17..91 100 -> Plus
2R 23954299..23955093 92..886 100 -> Plus
2R 23955148..23955260 887..999 100 -> Plus
2R 23955319..23955406 1000..1087 100 -> Plus
2R 23955460..23955996 1088..1624 100 -> Plus
2R 23956053..23956294 1625..1866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:59 Download gff for BS06662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19841687..19841761 17..91 100 -> Plus
arm_2R 19841822..19842616 92..886 100 -> Plus
arm_2R 19842671..19842783 887..999 100 -> Plus
arm_2R 19842842..19842929 1000..1087 100 -> Plus
arm_2R 19842983..19843519 1088..1624 100 -> Plus
arm_2R 19843576..19843817 1625..1866 100   Plus

BS06662.3prime Sequence

919 bp (838 high quality bases) assembled on 2005-12-04

> BS06662.3prime
ATGGTCTAGAAAGCTTTCACTGCTTGAACGCGTAGACCGATCCCTTCTTG
ATGTATTTGTAGGGGCGTGAGCGGCTCCGCTTGGCGAAGGCGCTTATGTA
AGGCTTCTCCTTGTTGTACTCAATGGTGTTTTGCATGGATCCCTCGGTTT
CGAGGAATATATCGAAGCTGTAGATGGTGCGGAAGAGCTGCGCGTACAGG
ATGCAGTCGTTGGGCTCCAAATGTTTGGGCTGCAGGGAGTTGGTCCAGAA
CTCCATCATCTTGATCGCCGAATTGTTTTGCGCGGTAAGGCATCCGTTCC
AGTGCACATTCAGAATCCATAGAGGCATTTCCAGTGGATAGTTACTCGGT
ATTCTAATAAAGCACTCCATTTTGGCCGATCCCCGGACGATGACAGCGCG
GTAAGAGTTGTACGTAATACCCTTGTCCGCTGACGAAGAATTCAGTGCGT
CTGAAATTTGCGAGTGAAGCTCCTCATGTGTGATGGCAGTCCATTGGACG
AGACTGCACGACAGGCCGGCTGGATAGATGTTCTCCTGCAAGCTATACAA
ATCGATATCCTTGAAGGTCAGCCCGCGAATCTGCTGGCTTAAACGCTGCC
AAGAGTTCAAGCGCCTGGCAATGCGGTCAATAATCTCCTTGTTGTTCTTA
TTCAAGTTCAGTTCGTGTTTGTACAGCATCGAACTGTTGACGGTTGCAAT
CGAGCACATACTTTGCAGCCAACAGAAGGGTTTTCCGTAGTCCTTGGCCT
TGAGGTAGCGCACACATTCCTCGGCTGTTAAATCCGAGCTTCGTAGCTCG
TATTGGATTCCCGGAATGGGTAATTCATTGCCCAAGTCATTGGGGTACAA
ATGCCGCAATAGGTGGTGAACAAAGTTTGTGTCACCCTGGCCGTTGGCAT
TCCTGGAGCAGTTAAGTTG

BS06662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2980-PA 1851 thoc5-RA 949..1851 919..17 4515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-RA 2035 CG2980-RA 1022..1924 919..17 4515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23955458..23955996 798..260 2695 100 Minus
2R 25286936 2R 23956051..23956295 261..17 1225 100 Minus
2R 25286936 2R 23955318..23955413 885..790 450 97.9 Minus
Blast to na_te.dros performed on 2015-02-09 01:22:58 has no hits.

BS06662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:19 Download gff for BS06662.3prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-PA 949..1851 17..919 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:52 Download gff for BS06662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2980-PA 949..1851 17..919 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:54:05 Download gff for BS06662.3prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 1022..1929 11..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:08:18 Download gff for BS06662.3prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 1022..1929 11..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:08:18 Download gff for BS06662.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23955226..23955260 885..919 100 -> Minus
2R 23955319..23955406 797..884 100 -> Minus
2R 23955460..23955996 260..796 100 -> Minus
2R 23956053..23956300 11..259 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:54:05 Download gff for BS06662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19842749..19842783 885..919 100 -> Minus
arm_2R 19842842..19842929 797..884 100 -> Minus
arm_2R 19842983..19843519 260..796 100 -> Minus
arm_2R 19843576..19843823 11..259 99   Minus

BS06662.5prime Sequence

884 bp (756 high quality bases) assembled on 2005-12-04

> BS06662.5prime
GAAGTTATCAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGC
TGCAAAAGGCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCG
ACGGATGAGGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCA
CGCCAACCGCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGC
ACCTGGAAAAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTT
CTGTACGAAGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTT
CAAGAGCAGGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCA
GCGAGCTGCCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAG
CAGCACCTTCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGA
CAAGCAGTACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACA
ATCTTAGCCACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACT
CTGCAGAGCGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGA
CGTGGAATGGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCT
ACGTTTTGTTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAG
TCCTTCACCGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCANATGCAGGA
GTTGCTTAAGGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAA
AGGAAAGTGGAGACCGGGAAAAGATTGCCGATAAAAACAACTTGGACGAC
TCACTCGCTCCTCACCCACTACACATTTGTTTGA

BS06662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2980-PA 1851 thoc5-RA 1..868 17..884 4321 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-RA 2035 CG2980-RA 74..941 17..884 4329 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23954297..23955091 90..884 3964 99.9 Plus
2R 25286936 2R 23954164..23954239 17..92 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:29:31 has no hits.

BS06662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:20 Download gff for BS06662.5prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:29:53 Download gff for BS06662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2980-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:11:57 Download gff for BS06662.5prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 74..940 17..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:48 Download gff for BS06662.5prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 74..940 17..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:48 Download gff for BS06662.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23954164..23954238 17..91 100 -> Plus
2R 23954299..23955090 92..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:11:57 Download gff for BS06662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19841687..19841761 17..91 100 -> Plus
arm_2R 19841822..19842613 92..883 99   Plus

BS06662.pep Sequence

Translation from 16 to 1866

> BS06662.pep
METILNTQFDQLQKAIEGIKEAKSKGQSTDEARIATTLMFVALKHANREV
KHKIKAGRDKLHLEKCKVDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDT
SLELLSEAEYSSELPDMPNDAEELSSHKQHLHRLDCELRLRKALDKQYSA
LLSSKQELLQDNLSHAQRYVSFAPALRTLQSATKPLHDALQLSLDVEWKL
SAVVKYLPKPLYVLFIVLQSLQRVSEEQSFTAEVVGYESEAQMQELLKEK
KCSTLNYRQTKKESGDREKIADKNNLDDSLAPHPLHICLTIGAAGSNQLV
LQIRYFDFIKCATVWGQLNCSRNANGQGDTNFVHHLLRHLYPNDLGNELP
IPGIQYELRSSDLTAEECVRYLKAKDYGKPFCWLQSMCSIATVNSSMLYK
HELNLNKNNKEIIDRIARRLNSWQRLSQQIRGLTFKDIDLYSLQENIYPA
GLSCSLVQWTAITHEELHSQISDALNSSSADKGITYNSYRAVIVRGSAKM
ECFIRIPSNYPLEMPLWILNVHWNGCLTAQNNSAIKMMEFWTNSLQPKHL
EPNDCILYAQLFRTIYSFDIFLETEGSMQNTIEYNKEKPYISAFAKRSRS
RPYKYIKKGSVYAFKQ*

BS06662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-PA 616 CG2980-PA 1..616 1..616 3198 100 Plus