Clone Sequence Records
BS06665.complete Sequence
2153 bp assembled on 2009-12-07
GenBank Submission: KX800990
> BS06665.complete
GAAGTTATCAGTCGACATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCA
CCAAGCGGCCCAAGGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGG
GGCGAGGATCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCT
GCTGCAGCCGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACA
ACGAGCAGCTGCAGCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGG
TGCATCGAAATGCTTGACACGGATCATCCTAAGCGGCTGTGCAACAGCCT
ACACACGCTGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACGCAG
AACCAACATTAAACATCCTAAACGAGATCTTCGGCCATGAGAAGATGGAC
GAATGGCTGAAGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGGCGA
TGTGCCCGAAAACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTCTGG
TTACGGGCACGGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTAATG
ATGCACAGCATGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTACGTT
CCGTAGCCAGCATGGACACGACATCGTTATCCTACTTACTATCCTGGTCA
ACTATCGCAAGCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCCATA
CTCGCTGATGAGCTGGCTTTAAATGGCTATGGCCAAATGATATCGCAATC
GCTAATTGATTTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGCAAT
CCTCTTCCTGGTTTTCGTCGCTGTCGAATATTGTGGGCAACATGTTTGTG
TCGGATGAAGGATGCGAACGGGTGCAGCAGATCAAGGCGAATAATGGCCT
TCTACTTGCCCTCTACGAGGCAGTGCACCTGAATCGGAACTTCATCACAA
CTCTGGCTCACACGCAGGCAGAGTCCAGTGCCCCGCCCTCGCCCAGTAAC
ACATTGAGTCTGGCCCAACCTGTGCCGGATCTATCTAATGCACCCATCAT
TGACATTACGCAGTATCCCACCAATCTGCTGGTGGCCGTATTTCAGTACT
GTTCCATCGTGATGCAGGACAATAAGAACGAATCGAGCATTGCTAATCTG
AAGCTGTGTTTCCTCATCCTCACCTGCATTTCCGAGGACCAGTACGCCAA
CTCCATGATGCACGACAGCAATCTTACCTTCAAAGTCATGCTGCATCGGG
CGCAGATGCGTCATCGCAAGCTGAATGTGGATCGGGTGGGCAAGTCCCAG
CCTTTGGCTGCCACTCTACTGGACCTCCTGGTGGAGTTCATTGTATCGCA
TTTGATGAAAAAGTTCCCGATGGAGCTGTATCTGCTCTGCATTGGAGTTA
TCCATCGAATCTTGTGCTATCAAAAGAGATGTAGAGTGCGGCTCAATTAT
CCGTGGAAGGAACTTTGGTCGGCTCTCATTGGTCTTCTGCGGTTCTTGGT
CAACCAAGAACAGACGCTGGTTAAAAAGTGCAACATTTTTCATCTGTCGC
TACAGGTGGTGAATATATTTAATCTGTTTATTACGTACGGTGATACTTTC
CTGGCCACAACAAATAGCTATGATGAGCTCTACTACGAACTGAACCGCGA
GGAGAAGGTATTTACGGAAATACATGCCATGGTTCTTCGCTATACAACGA
TGCCGGACTGCGAATACAAAGACGATGTAATCAAGCTCTTAAACGCTTTG
GTAAATATCCTGGCCATTGTTAAGCACTTTCAGAACAAGATCAAGGAATG
GCTGGCCGAACAAGGCCTCTCTACGCCCACGGAGGAGCAGATACTCGACG
TGGTGCGCAAGAACTACGACCTAACGCTCAAACTGCAGGACTCCCTGGAC
CAATACGAACGTTACACAGAAACGCCGCTGCACACCAACTTCTTTAAGTT
GATGGTTCGCGATGTTGTCAACGATACGCGCAAGCACATCTACGGCTATG
TGAAGGAGGCAGTATCTGTTATTCCGGACCAGGAAATTCTCCTCAGTTCC
TCTATGACATCCGTTTCGGCCGGTACAGCCACTCCGGCTTCAGCAACAGC
AGTGCCAGAAGCAAAAGCGTTGCCTTCTTTTGCTTAGAAGCTTTCTAGAC
CAT
BS06665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-RA | 2121 | CG8379-PA | 1..2121 | 17..2137 | 10605 | 100 | Plus |
| CG8379-RB | 2124 | CG8379-PB | 1..2124 | 17..2137 | 10540 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-RA | 2447 | CG8379-RA | 144..2265 | 16..2137 | 10610 | 100 | Plus |
| CG8379-RB | 2450 | CG8379-RB | 144..2268 | 16..2137 | 10545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8825632..8826588 | 726..1682 | 4785 | 100 | Plus |
| 3R | 32079331 | 3R | 8826642..8827097 | 1682..2137 | 2280 | 100 | Plus |
| 3R | 32079331 | 3R | 8824954..8825408 | 272..726 | 2275 | 100 | Plus |
| 3R | 32079331 | 3R | 8824686..8824889 | 69..272 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 8824554..8824610 | 16..72 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:09:50 has no hits.
BS06665.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:27 Download gff for
BS06665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 146..2266 | 17..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:26 Download gff for
BS06665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 145..2265 | 17..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:27 Download gff for
BS06665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 146..2266 | 17..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:14 Download gff for
BS06665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 145..2265 | 17..2137 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:14 Download gff for
BS06665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8824555..8824608 | 17..70 | 100 | -> | Plus |
| 3R | 8824688..8824889 | 71..272 | 100 | -> | Plus |
| 3R | 8824955..8825408 | 273..726 | 100 | -> | Plus |
| 3R | 8825633..8826588 | 727..1682 | 100 | -> | Plus |
| 3R | 8826643..8827097 | 1683..2137 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:26 Download gff for
BS06665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4650277..4650330 | 17..70 | 100 | -> | Plus |
| arm_3R | 4650410..4650611 | 71..272 | 100 | -> | Plus |
| arm_3R | 4650677..4651130 | 273..726 | 100 | -> | Plus |
| arm_3R | 4651355..4652310 | 727..1682 | 100 | -> | Plus |
| arm_3R | 4652365..4652819 | 1683..2137 | 100 | | Plus |
BS06665.3prime Sequence
924 bp (797 high quality bases) assembled on 2005-12-04
> BS06665.3prime
ATGGTCTAGAAAGCTTCTAAGCAAAAGAAGGCAACGCTTTTGCTTCTGGC
ACTGCTGTTGCTGAAGCCGGAGTGGCTGTACCGGCCGAAACGGATGTCAT
AGAGGAACTGAGGAGAATTTCCTGGTCCGGAATAACAGATACTGCCTCCT
TCACATAGCCGTAGATGTGCTTGCGCGTATCGTTGACAACATCGCGAACC
ATCAACTTAAAGAAGTTGGTGTGCAGCGGCGTTTCTGTGTAACGTTCGTA
TTGGTCCAGGGAGTCCTGCAGTTTGAGCGTTAGGTCGTAGTTCTTGCGCA
CCACGTCGAGTATCTGCTCCTCCGTGGGCGTAGAGAGGCCTTGTTCGGCC
AGCCATTCCTTGATCTTGTTCTGAAAGTGCTTAACAATGGCCAGGATATT
TACCAAAGCGTTTAAGAGCTTGATTACATCGTCTTTGTATTCGCAGTCCG
GCATCGTTGTATAGCGAAGAACCATGGCATGTATTTCCGTAAATACCTTC
TCCTCGCGGTTCAGTTCGTAGTAGAGCTCATCATAGCTATTTGTTGTGGC
CAGGAAAGTATCACCGTACGTAATAAACAGATTAAATATATTCACCACCT
GTAGCGACAGATGAAAAATGTTGCACTTTTTAACCAGCGTCTGTTCTTGG
TTGACCAAGAACCGCAGAAGACCAATGAGAGCCGACCAAAGTTCCTTCCA
CGGATAATTGAGCCGCACTCTACATCTCTTTTGATAGCACAAGATTCGAT
GGATAACTCCAATGCAGAGCAGATACAGCTCCATCGGGAACTTTTTCATC
AAATGCGATACAATGAACTCCACCAGGAGGTCCAGTAGAGTGGCAGCCAA
AGGCTGGGACTTGCCCACCCGATCCACATTCAGCTTGCGATGACGCATCT
GCGCCCGATGCAGCATGACTTTGA
BS06665.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-PA | 2121 | CG8379-RA | 1214..2121 | 924..17 | 4540 | 100 | Minus |
| CG8379-PB | 2124 | CG8379-RB | 1217..2124 | 924..17 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-RB | 2450 | CG8379-RB | 1361..2268 | 924..17 | 4540 | 100 | Minus |
| CG8379-RA | 2447 | CG8379-RA | 1358..2265 | 924..17 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8826642..8827097 | 472..17 | 2280 | 100 | Minus |
| 3R | 32079331 | 3R | 8826136..8826588 | 924..472 | 2265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:54:12 has no hits.
BS06665.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:25 Download gff for
BS06665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-PB | 1218..2124 | 17..923 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:00 Download gff for
BS06665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-PB | 1218..2124 | 17..923 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:01 Download gff for
BS06665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 1359..2268 | 10..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:24 Download gff for
BS06665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 1359..2268 | 10..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:24 Download gff for
BS06665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8826137..8826588 | 472..923 | 100 | -> | Minus |
| 3R | 8826643..8827100 | 10..471 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:01 Download gff for
BS06665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4651859..4652310 | 472..923 | 100 | -> | Minus |
| arm_3R | 4652365..4652822 | 10..471 | 99 | | Minus |
BS06665.5prime Sequence
834 bp (833 high quality bases) assembled on 2005-12-04
> BS06665.5prime
GAAGTTATCAGTCGACATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCA
CCAAGCGGCCCAAGGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGG
GGCGAGGATCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCT
GCTGCAGCCGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACA
ACGAGCAGCTGCAGCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGG
TGCATCGAAATGCTTGACACGGATCATCCTAAGCGGCTGTGCAACAGCCT
ACACACGCTGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACGCAG
AACCAACATTAAACATCCTAAACGAGATCTTCGGCCATGAGAAGATGGAC
GAATGGCTGAAGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGGCGA
TGTGCCCGAAAACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTCTGG
TTACGGGCACGGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTAATG
ATGCACAGCATGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTACGTT
CCGTAGCCAGCATGGACACGACATCGTTATCCTACTTACTATCCTGGTCA
ACTATCGCAAGCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCCATA
CTCGCTGATGAGCTGGCTTTAAATGGCTATGGCCAAATGATATCGCAATC
GCTAATTGATTTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGCAAT
CCTCTTCCTGGTTTTCGTCGCTGTCGAATATTGT
BS06665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-PA | 2121 | CG8379-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
| CG8379-PB | 2124 | CG8379-RB | 259..821 | 272..834 | 2815 | 100 | Plus |
| CG8379-PB | 2124 | CG8379-RB | 1..257 | 17..273 | 1285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-RA | 2447 | CG8379-RA | 144..962 | 16..834 | 4095 | 100 | Plus |
| CG8379-RB | 2450 | CG8379-RB | 144..965 | 16..834 | 4055 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8824954..8825408 | 272..726 | 2275 | 100 | Plus |
| 3R | 32079331 | 3R | 8824686..8824889 | 69..272 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 8825632..8825740 | 726..834 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 8824554..8824610 | 16..72 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:34:20 has no hits.
BS06665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:26 Download gff for
BS06665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:02 Download gff for
BS06665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:26:25 Download gff for
BS06665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 140..962 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:46:06 Download gff for
BS06665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 140..962 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:46:06 Download gff for
BS06665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8824550..8824608 | 9..70 | 95 | -> | Plus |
| 3R | 8824688..8824889 | 71..272 | 100 | -> | Plus |
| 3R | 8824955..8825408 | 273..726 | 100 | -> | Plus |
| 3R | 8825633..8825740 | 727..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:26:25 Download gff for
BS06665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4650272..4650330 | 9..70 | 95 | -> | Plus |
| arm_3R | 4650410..4650611 | 71..272 | 100 | -> | Plus |
| arm_3R | 4650677..4651130 | 273..726 | 100 | -> | Plus |
| arm_3R | 4651355..4651462 | 727..834 | 100 | | Plus |
BS06665.pep Sequence
Translation from 16 to 2136
> BS06665.pep
MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNF
EALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTDHPKRLCNSLHTLCS
LFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPENA
RFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQHG
HDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDFC
RQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLALY
EAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQY
PTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMHD
SNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKKF
PMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQT
LVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVFT
EIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQG
LSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRDV
VNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEAK
ALPSFA*
BS06665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-PA | 706 | CG8379-PA | 1..706 | 1..706 | 3655 | 100 | Plus |
| CG8379-PB | 707 | CG8379-PB | 1..707 | 1..706 | 3643 | 99.9 | Plus |
