Clone Sequence Records
BS06666.3prime Sequence
816 bp (815 high quality bases) assembled on 2005-12-04
> BS06666.3prime
ATGGTCTAGAAAGCTTCTAGTCTGTACCGAAGTATTTCTGGCCAAAGTGA
TTAGGTGCCACGGGATGCAGCTCGGAGGTGAGGATCTTCAGCTTGGGGAA
GGCATTCACTACGGTCCGAGCGGCAATGGGTGTGCAGAAGAGATTGGACA
GGATGATGCAGCTCTCGGGTACGCCGTGTTCCCGCAGCACATTCACCGCC
TGCAGCACAGTGTTGCCCGTGGACATGATGGGGTACATGAGTAGCACCTG
CCTGCTGCCGATGTCATCGGGAAAGCGGGCATAAACCACGCGGGCCTCAT
GCGTATTGGCATCGGACTCGACCAGGATCTTTCCAATGCGAATGGAGCGA
CAGCAGTCACGCAGTCCCTGCTCCATGGCCTCTCCCGATCGGATGATGGA
CACGCCGCAGTTGCCGGAGCGATACTTCAGTCCCTCGTAAATCGCACCGG
TGGGCGTCTCCACATCGCAATGGGTGTAGGGCAGTTGGTTGAGCGACTCC
TCGATGACCAGCCGGATGAGACGGTCGGCATAGAACTTGAAGTCACTGCG
CGTGGTGTTCTTGTCGCGCAATATGGTCAGCAGTTCGGCCACCTGGGAAT
TGCACTCGAGTAGCTTCAGGTTGCTGCCGTACTCCGCCAGGATCTCCTCC
GATGTGGCAGCTGGCACCGCGGCATGTGCATGCGTGGGAGTGTGCAGCTG
TTGCTCCTGCTCCTGGGCTTCCTGCTGCGGCTGCTGGTGATCTGAGGAAC
TGCTGCCCTCCTCCGACTGGGAGCCGCTGCTGCTGGGCGAGCCGGTGCGC
ATGTCGACTGATAACT
BS06666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-PA | 786 | CG5537-RA | 1..786 | 802..17 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-RC | 1191 | CG5537-RC | 106..893 | 803..16 | 3940 | 100 | Minus |
CG5537-RA | 1106 | CG5537-RA | 106..893 | 803..16 | 3940 | 100 | Minus |
CG5537-RB | 1045 | CG5537-RB | 106..881 | 803..28 | 3880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5811386..5811930 | 560..16 | 2725 | 100 | Minus |
3L | 28110227 | 3L | 5811078..5811321 | 803..560 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:50:42 has no hits.
BS06666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:27 Download gff for
BS06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-PA | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:03 Download gff for
BS06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-PA | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:54:25 Download gff for
BS06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..898 | 11..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:44:55 Download gff for
BS06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..898 | 11..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:44:55 Download gff for
BS06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5811068..5811320 | 561..812 | 98 | -> | Minus |
3L | 5811386..5811935 | 11..560 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:54:25 Download gff for
BS06666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5804168..5804420 | 561..812 | 98 | -> | Minus |
arm_3L | 5804486..5805035 | 11..560 | 99 | | Minus |
BS06666.5prime Sequence
816 bp (815 high quality bases) assembled on 2005-12-04
> BS06666.5prime
GAAGTTATCAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCC
AGTCGGAGGAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAA
GCCCAGGAGCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGC
GGTGCCAGCTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACC
TGAAGCTACTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTG
CGCGACAAGAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCT
CATCCGGCTGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATT
GCGATGTGGAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGC
TCCGGCAACTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCA
GGGACTGCGTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCG
AGTCCGATGCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCC
GATGACATCGGCAGCAGGCAGGTGCTACTCATGTACCCCATCATGTCCAC
GGGCAACACTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTAC
CCGAGAGCTGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCT
CGGACCGTAGTGAATGCCTTCCCCAAGCTGAAGATCCTCACCTCCGAGCT
GCATCCCGTGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACT
AGAAGCTTTCTAGACC
BS06666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-PA | 786 | CG5537-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-RC | 1191 | CG5537-RC | 106..893 | 16..803 | 3940 | 100 | Plus |
CG5537-RA | 1106 | CG5537-RA | 106..893 | 16..803 | 3940 | 100 | Plus |
CG5537-RB | 1045 | CG5537-RB | 106..881 | 16..791 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5811386..5811930 | 259..803 | 2725 | 100 | Plus |
3L | 28110227 | 3L | 5811078..5811321 | 16..259 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:13:44 has no hits.
BS06666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:28 Download gff for
BS06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:05 Download gff for
BS06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:37:13 Download gff for
BS06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..898 | 7..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:45:24 Download gff for
BS06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..898 | 7..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:45:24 Download gff for
BS06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5811068..5811320 | 7..258 | 98 | -> | Plus |
3L | 5811386..5811935 | 259..808 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:37:13 Download gff for
BS06666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5804168..5804420 | 7..258 | 98 | -> | Plus |
arm_3L | 5804486..5805035 | 259..808 | 99 | | Plus |
BS06666.complete Sequence
818 bp (818 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635582
> BS06666.complete
GAAGTTATCAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCC
AGTCGGAGGAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAA
GCCCAGGAGCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGC
GGTGCCAGCTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACC
TGAAGCTACTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTG
CGCGACAAGAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCT
CATCCGGCTGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATT
GCGATGTGGAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGC
TCCGGCAACTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCA
GGGACTGCGTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCG
AGTCCGATGCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCC
GATGACATCGGCAGCAGGCAGGTGCTACTCATGTACCCCATCATGTCCAC
GGGCAACACTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTAC
CCGAGAGCTGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCT
CGGACCGTAGTGAATGCCTTCCCCAAGCTGAAGATCCTCACCTCCGAGCT
GCATCCCGTGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACT
AGAAGCTTTCTAGACCAT
BS06666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-RC | 786 | CG5537-PC | 1..786 | 17..802 | 3930 | 100 | Plus |
CG5537-RA | 786 | CG5537-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG5537-RB | 786 | CG5537-PB | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-RC | 1191 | CG5537-RC | 106..893 | 16..803 | 3940 | 100 | Plus |
CG5537-RA | 1106 | CG5537-RA | 106..893 | 16..803 | 3940 | 100 | Plus |
CG5537-RB | 1045 | CG5537-RB | 106..881 | 16..791 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5811386..5811930 | 259..803 | 2725 | 100 | Plus |
3L | 28110227 | 3L | 5811078..5811321 | 16..259 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:08:19 has no hits.
BS06666.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:07 Download gff for
BS06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:59 Download gff for
BS06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..898 | 7..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:48 Download gff for
BS06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 107..892 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:07 Download gff for
BS06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..898 | 7..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:36 Download gff for
BS06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 107..892 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:36 Download gff for
BS06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5811079..5811320 | 17..258 | 100 | -> | Plus |
3L | 5811386..5811929 | 259..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:48 Download gff for
BS06666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5804179..5804420 | 17..258 | 100 | -> | Plus |
arm_3L | 5804486..5805029 | 259..802 | 100 | | Plus |
BS06666.pep Sequence
Translation from 16 to 801
> BS06666.pep
MRTGSPSSSGSQSEEGSSSSDHQQPQQEAQEQEQQLHTPTHAHAAVPAAT
SEEILAEYGSNLKLLECNSQVAELLTILRDKNTTRSDFKFYADRLIRLVI
EESLNQLPYTHCDVETPTGAIYEGLKYRSGNCGVSIIRSGEAMEQGLRDC
CRSIRIGKILVESDANTHEARVVYARFPDDIGSRQVLLMYPIMSTGNTVL
QAVNVLREHGVPESCIILSNLFCTPIAARTVVNAFPKLKILTSELHPVAP
NHFGQKYFGTD*
BS06666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-PC | 261 | CG5537-PC | 1..261 | 1..261 | 1346 | 100 | Plus |
CG5537-PA | 261 | CG5537-PA | 1..261 | 1..261 | 1346 | 100 | Plus |
CG5537-PB | 261 | CG5537-PB | 1..258 | 1..258 | 1329 | 100 | Plus |
l(2)k01209-PA | 561 | CG4798-PA | 346..556 | 61..261 | 433 | 44.5 | Plus |
l(2)k01209-PD | 626 | CG4798-PD | 411..621 | 61..261 | 433 | 44.5 | Plus |