Clone BS06666 Report

Search the DGRC for BS06666

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG5537-RA
Protein status:BS06666.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06666.3prime Sequence

816 bp (815 high quality bases) assembled on 2005-12-04

> BS06666.3prime
ATGGTCTAGAAAGCTTCTAGTCTGTACCGAAGTATTTCTGGCCAAAGTGA
TTAGGTGCCACGGGATGCAGCTCGGAGGTGAGGATCTTCAGCTTGGGGAA
GGCATTCACTACGGTCCGAGCGGCAATGGGTGTGCAGAAGAGATTGGACA
GGATGATGCAGCTCTCGGGTACGCCGTGTTCCCGCAGCACATTCACCGCC
TGCAGCACAGTGTTGCCCGTGGACATGATGGGGTACATGAGTAGCACCTG
CCTGCTGCCGATGTCATCGGGAAAGCGGGCATAAACCACGCGGGCCTCAT
GCGTATTGGCATCGGACTCGACCAGGATCTTTCCAATGCGAATGGAGCGA
CAGCAGTCACGCAGTCCCTGCTCCATGGCCTCTCCCGATCGGATGATGGA
CACGCCGCAGTTGCCGGAGCGATACTTCAGTCCCTCGTAAATCGCACCGG
TGGGCGTCTCCACATCGCAATGGGTGTAGGGCAGTTGGTTGAGCGACTCC
TCGATGACCAGCCGGATGAGACGGTCGGCATAGAACTTGAAGTCACTGCG
CGTGGTGTTCTTGTCGCGCAATATGGTCAGCAGTTCGGCCACCTGGGAAT
TGCACTCGAGTAGCTTCAGGTTGCTGCCGTACTCCGCCAGGATCTCCTCC
GATGTGGCAGCTGGCACCGCGGCATGTGCATGCGTGGGAGTGTGCAGCTG
TTGCTCCTGCTCCTGGGCTTCCTGCTGCGGCTGCTGGTGATCTGAGGAAC
TGCTGCCCTCCTCCGACTGGGAGCCGCTGCTGCTGGGCGAGCCGGTGCGC
ATGTCGACTGATAACT

BS06666.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-PA 786 CG5537-RA 1..786 802..17 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-RC 1191 CG5537-RC 106..893 803..16 3940 100 Minus
CG5537-RA 1106 CG5537-RA 106..893 803..16 3940 100 Minus
CG5537-RB 1045 CG5537-RB 106..881 803..28 3880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5811386..5811930 560..16 2725 100 Minus
3L 28110227 3L 5811078..5811321 803..560 1220 100 Minus
Blast to na_te.dros performed on 2015-02-03 12:50:42 has no hits.

BS06666.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:27 Download gff for BS06666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-PA 1..786 17..802 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:03 Download gff for BS06666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-PA 1..786 17..802 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:54:25 Download gff for BS06666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..898 11..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:44:55 Download gff for BS06666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..898 11..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:44:55 Download gff for BS06666.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5811068..5811320 561..812 98 -> Minus
3L 5811386..5811935 11..560 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:54:25 Download gff for BS06666.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5804168..5804420 561..812 98 -> Minus
arm_3L 5804486..5805035 11..560 99   Minus

BS06666.5prime Sequence

816 bp (815 high quality bases) assembled on 2005-12-04

> BS06666.5prime
GAAGTTATCAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCC
AGTCGGAGGAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAA
GCCCAGGAGCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGC
GGTGCCAGCTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACC
TGAAGCTACTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTG
CGCGACAAGAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCT
CATCCGGCTGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATT
GCGATGTGGAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGC
TCCGGCAACTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCA
GGGACTGCGTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCG
AGTCCGATGCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCC
GATGACATCGGCAGCAGGCAGGTGCTACTCATGTACCCCATCATGTCCAC
GGGCAACACTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTAC
CCGAGAGCTGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCT
CGGACCGTAGTGAATGCCTTCCCCAAGCTGAAGATCCTCACCTCCGAGCT
GCATCCCGTGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACT
AGAAGCTTTCTAGACC

BS06666.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-PA 786 CG5537-RA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-RC 1191 CG5537-RC 106..893 16..803 3940 100 Plus
CG5537-RA 1106 CG5537-RA 106..893 16..803 3940 100 Plus
CG5537-RB 1045 CG5537-RB 106..881 16..791 3880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5811386..5811930 259..803 2725 100 Plus
3L 28110227 3L 5811078..5811321 16..259 1220 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:13:44 has no hits.

BS06666.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:28 Download gff for BS06666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:05 Download gff for BS06666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:37:13 Download gff for BS06666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..898 7..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:45:24 Download gff for BS06666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..898 7..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:45:24 Download gff for BS06666.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5811068..5811320 7..258 98 -> Plus
3L 5811386..5811935 259..808 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:37:13 Download gff for BS06666.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5804168..5804420 7..258 98 -> Plus
arm_3L 5804486..5805035 259..808 99   Plus

BS06666.complete Sequence

818 bp (818 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635582

> BS06666.complete
GAAGTTATCAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCC
AGTCGGAGGAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAA
GCCCAGGAGCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGC
GGTGCCAGCTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACC
TGAAGCTACTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTG
CGCGACAAGAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCT
CATCCGGCTGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATT
GCGATGTGGAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGC
TCCGGCAACTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCA
GGGACTGCGTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCG
AGTCCGATGCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCC
GATGACATCGGCAGCAGGCAGGTGCTACTCATGTACCCCATCATGTCCAC
GGGCAACACTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTAC
CCGAGAGCTGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCT
CGGACCGTAGTGAATGCCTTCCCCAAGCTGAAGATCCTCACCTCCGAGCT
GCATCCCGTGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACT
AGAAGCTTTCTAGACCAT

BS06666.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-RC 786 CG5537-PC 1..786 17..802 3930 100 Plus
CG5537-RA 786 CG5537-PA 1..786 17..802 3930 100 Plus
CG5537-RB 786 CG5537-PB 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-RC 1191 CG5537-RC 106..893 16..803 3940 100 Plus
CG5537-RA 1106 CG5537-RA 106..893 16..803 3940 100 Plus
CG5537-RB 1045 CG5537-RB 106..881 16..791 3880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5811386..5811930 259..803 2725 100 Plus
3L 28110227 3L 5811078..5811321 16..259 1220 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:08:19 has no hits.

BS06666.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:07 Download gff for BS06666.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:59 Download gff for BS06666.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..898 7..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:48 Download gff for BS06666.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 107..892 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:07 Download gff for BS06666.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..898 7..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:36 Download gff for BS06666.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 107..892 17..802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:36 Download gff for BS06666.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5811079..5811320 17..258 100 -> Plus
3L 5811386..5811929 259..802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:48 Download gff for BS06666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5804179..5804420 17..258 100 -> Plus
arm_3L 5804486..5805029 259..802 100   Plus

BS06666.pep Sequence

Translation from 16 to 801

> BS06666.pep
MRTGSPSSSGSQSEEGSSSSDHQQPQQEAQEQEQQLHTPTHAHAAVPAAT
SEEILAEYGSNLKLLECNSQVAELLTILRDKNTTRSDFKFYADRLIRLVI
EESLNQLPYTHCDVETPTGAIYEGLKYRSGNCGVSIIRSGEAMEQGLRDC
CRSIRIGKILVESDANTHEARVVYARFPDDIGSRQVLLMYPIMSTGNTVL
QAVNVLREHGVPESCIILSNLFCTPIAARTVVNAFPKLKILTSELHPVAP
NHFGQKYFGTD*

BS06666.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-PC 261 CG5537-PC 1..261 1..261 1346 100 Plus
CG5537-PA 261 CG5537-PA 1..261 1..261 1346 100 Plus
CG5537-PB 261 CG5537-PB 1..258 1..258 1329 100 Plus
l(2)k01209-PA 561 CG4798-PA 346..556 61..261 433 44.5 Plus
l(2)k01209-PD 626 CG4798-PD 411..621 61..261 433 44.5 Plus