Clone Sequence Records
BS06668.3prime Sequence
962 bp (811 high quality bases) assembled on 2005-12-04
> BS06668.3prime
ATGGTCTAGAAAGCTTCTAAAATTGCGGTATAGTCGAGACGCGGTTATAG
AGCGTCTGCCTTTTGGCCACGCGGAAGGGACAACGTGTCATCATCTTAAA
GACGACGAAACCACAGACGACGAATAGTCCCCAAAAAACATAGGTGAAGA
GCAGGATAAATCGATTTGGCTGCCACAGCACCGTGTAGCTCAGATTGTAG
TTTTCCAAAACCGCGTAGCCCAATCCGATCTTGGACTTTCCCATGCGATA
CGAGCAAGTGGGCACCATTATCTCCAGATAGCTGTGCTCCTGCTCTTTGA
GGGCCTTCAAGTCAAAATGCCTCACGGAGTTTTCATAAAAGTTGATCACC
TTGGTGGAGGGGTAAATAAATATTCTGGATTCATGCCAGTGTCCTGAGAA
AATGATATGTGGATCCAAGTCGCTGATGATGGCTCTCAACAGGGGTCCTC
CGCCAATGAGCAGCGGGGCATGGGATACGCCAATTCTTAGACGATCCGCA
TTGTTATCCCTATCCGGGTTGCTAAAGTCCAATAGCATGCGGTTTATCTT
GAAGAAGCGTAATCGATTGTCATAGTCAAAGAGGTCTTCACTCATGAATT
CGTTCTCAAAGCGTCTTTGGTTCGAGTTGGATATGTAGTCGCCATTCTCG
CCGCCAATATCATTGTCACCCGGCACATGGACGCGTTTTTTGTAGTTCTT
ATTCTGATAAATTCGTCTGAACCGCTGAACGTACTGCTTGTACTCTTGAG
CCGTGGCAATGTTGCCTTCGTCCAACAGATCGCCCAGGAACACTATGATG
TGAGGCTGTGTAAGGCAAGAGCTCGCTCGAAAGTCTTCGCCAGGTATCTA
TCCGAATCGTACCTGGCTAAAGGACTGTGCGAAGATCGATCGTAGGAGTT
TCCCAGTATCTGGGGATCAGCAATAAGCAGCAGGCGCGTGCAAATATCTA
GTTTGCAATCGA
BS06668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8889-PA | 1068 | CG8889-RA | 272..1068 | 813..17 | 3985 | 100 | Minus |
| CG8889-PB | 1074 | CG8889-RB | 278..1074 | 813..17 | 3985 | 100 | Minus |
| CG8889-PC | 579 | CG8889-RC | 1..579 | 595..17 | 2895 | 100 | Minus |
| CG8889-PA | 1068 | CG8889-RA | 122..272 | 962..812 | 730 | 99.3 | Minus |
| CG8889-PB | 1074 | CG8889-RB | 128..278 | 962..812 | 730 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mppe-RB | 1763 | CG8889-RB | 587..1534 | 962..16 | 4700 | 99.8 | Minus |
| Mppe-RA | 1757 | CG8889-RA | 581..1528 | 962..16 | 4700 | 99.8 | Minus |
| Mppe-RE | 1790 | CG8889-RE | 892..1561 | 685..16 | 3350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12026092..12026572 | 205..685 | 2405 | 100 | Plus |
| 2R | 25286936 | 2R | 12026723..12026988 | 686..950 | 1265 | 99.2 | Plus |
| 2R | 25286936 | 2R | 12025843..12026032 | 16..205 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:42:18 has no hits.
BS06668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:32 Download gff for
BS06668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8889-PB | 129..1074 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:09 Download gff for
BS06668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8889-PB | 129..1074 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:15:07 Download gff for
BS06668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 582..1530 | 12..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:35 Download gff for
BS06668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 582..1530 | 12..961 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:35 Download gff for
BS06668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12025841..12026031 | 12..204 | 98 | <- | Plus |
| 2R | 12026092..12026572 | 205..685 | 100 | <- | Plus |
| 2R | 12026723..12026992 | 686..955 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:15:07 Download gff for
BS06668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7913346..7913536 | 12..204 | 98 | <- | Plus |
| arm_2R | 7913597..7914077 | 205..685 | 100 | <- | Plus |
| arm_2R | 7914228..7914497 | 686..955 | 98 | | Plus |
BS06668.5prime Sequence
867 bp (793 high quality bases) assembled on 2005-12-04
> BS06668.5prime
GAAGTTATCAGTCGACATGGCTTCCTTGCGCGTCGTCAATAGATTAGTGT
GCCGCGGTTTTGTGGCTCTTACGTTGCTGCTGGTCTTCTTCAACGAGTTT
ATAGTTTACTACATGGCCCAGTCCAGTTGGCAGCCAATCGATTGCAAACT
AGATAATTGCACGCGCCTGCTGCTTATTGCTGATCCCCAGATACTGGGAA
ACTCCTACGATCGATCTTCGCACAGTCCTTTAGCCAGGTACGATTCGGAT
AGATACCTGGCGAAGACTTTCGAGCGAGCTCTTGCCTTTACACAGCCTCA
CATCATAGTGTTCCTGGGCGATCTGTTGGACGAAGGCAACATTGCCACGG
CTCAAGAGTACAAGCAGTACGTTCAGCGGTTCAGACGAATTTATCAGAAT
AAGAACTACAAAAAACGCGTCCATGTGCCGGGTGACAATGATATTGGCGG
CGAGAATGGCGACTACATATCCAACTCGAACCAAAGACGCTTTGAGAACG
AATTCATGAGTGAAGACCTCTTTGACTATGACAATCGATTACGCTTCTTC
AAGATAAACCGCATGCTATTGGACTTTAGCAACCCGGATAGGGATAACAA
TGCGGATCGTCTAAGAATTGGCGTATCCCATGCCCCGCTGCTCATTGGCG
GAGGACCCCTGTTGAGAGCCATCATCAGCGACTTGGATCCACATATCATT
TTCTCAGGACACTGGCATGAATCCAGAATATTTATTTACCCCTCCACCAA
GGTGATCAACTTTTATGAAAACTCCGTGAGGCATTTTGACTTGAANGCCC
TCAAAGAGCAGGAGCACAGCTATCTGGAGATAATGGTGCCCACTTGCTCG
TATCGCATGGGAAAGTC
BS06668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8889-PA | 1068 | CG8889-RA | 1..851 | 17..867 | 4236 | 99.8 | Plus |
| CG8889-PB | 1074 | CG8889-RB | 31..857 | 41..867 | 4116 | 99.8 | Plus |
| CG8889-PC | 579 | CG8889-RC | 1..362 | 506..867 | 1791 | 99.7 | Plus |
| CG8889-PB | 1074 | CG8889-RB | 1..27 | 17..43 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mppe-RA | 1757 | CG8889-RA | 460..1310 | 17..867 | 4244 | 99.9 | Plus |
| Mppe-RB | 1763 | CG8889-RB | 460..1316 | 17..867 | 4174 | 99.2 | Plus |
| Mppe-RE | 1790 | CG8889-RE | 892..1343 | 416..867 | 2249 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12026121..12026572 | 867..416 | 2249 | 99.8 | Minus |
| 2R | 25286936 | 2R | 12026723..12026988 | 415..150 | 1330 | 100 | Minus |
| 2R | 25286936 | 2R | 12027038..12027153 | 156..41 | 565 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:39:41 has no hits.
BS06668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:33 Download gff for
BS06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8889-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:11 Download gff for
BS06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8889-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:27:02 Download gff for
BS06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 460..1310 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:15 Download gff for
BS06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 460..1310 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:15 Download gff for
BS06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12026121..12026572 | 416..867 | 99 | <- | Minus |
| 2R | 12026723..12026985 | 153..415 | 100 | <- | Minus |
| 2R | 12027042..12027151 | 43..152 | 100 | <- | Minus |
| 2R | 12027223..12027248 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:27:02 Download gff for
BS06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7914547..7914656 | 43..152 | 100 | <- | Minus |
| arm_2R | 7914728..7914753 | 17..42 | 100 | | Minus |
| arm_2R | 7913626..7914077 | 416..867 | 99 | <- | Minus |
| arm_2R | 7914228..7914490 | 153..415 | 100 | <- | Minus |
BS06668.complete Sequence
1100 bp (1100 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635583
> BS06668.complete
GAAGTTATCAGTCGACATGGCTTCCTTGCGCGTCGTCAATAGATTAGTGT
GCCGCGGTTTTGTGGCTCTTACGTTGCTGCTGGTCTTCTTCAACGAGTTT
ATAGTTTACTACATGGCCCAGTCCAGTTGGCAGCCAATCGATTGCAAACT
AGATAATTGCACGCGCCTGCTGCTTATTGCTGATCCCCAGATACTGGGAA
ACTCCTACGATCGATCTTCGCACAGTCCTTTAGCCAGGTACGATTCGGAT
AGATACCTGGCGAAGACTTTCGAGCGAGCTCTTGCCTTTACACAGCCTCA
CATCATAGTGTTCCTGGGCGATCTGTTGGACGAAGGCAACATTGCCACGG
CTCAAGAGTACAAGCAGTACGTTCAGCGGTTCAGACGAATTTATCAGAAT
AAGAACTACAAAAAACGCGTCCATGTGCCGGGTGACAATGATATTGGCGG
CGAGAATGGCGACTACATATCCAACTCGAACCAAAGACGCTTTGAGAACG
AATTCATGAGTGAAGACCTCTTTGACTATGACAATCGATTACGCTTCTTC
AAGATAAACCGCATGCTATTGGACTTTAGCAACCCGGATAGGGATAACAA
TGCGGATCGTCTAAGAATTGGCGTATCCCATGCCCCGCTGCTCATTGGCG
GAGGACCCCTGTTGAGAGCCATCATCAGCGACTTGGATCCACATATCATT
TTCTCAGGACACTGGCATGAATCCAGAATATTTATTTACCCCTCCACCAA
GGTGATCAACTTTTATGAAAACTCCGTGAGGCATTTTGACTTGAAGGCCC
TCAAAGAGCAGGAGCACAGCTATCTGGAGATAATGGTGCCCACTTGCTCG
TATCGCATGGGAAAGTCCAAGATCGGATTGGGCTACGCGGTTTTGGAAAA
CTACAATCTGAGCTACACGGTGCTGTGGCAGCCAAATCGATTTATCCTGC
TCTTCACCTATGTTTTTTGGGGACTATTCGTCGTCTGTGGTTTCGTCGTC
TTTAAGATGATGACACGTTGTCCCTTCCGCGTGGCCAAAAGGCAGACGCT
CTATAACCGCGTCTCGACTATACCGCAATTTTAGAAGCTTTCTAGACCAT
BS06668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mppe-RA | 1068 | CG8889-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
| Mppe-RB | 1074 | CG8889-PB | 1..1074 | 17..1084 | 5245 | 99.4 | Plus |
| Mppe-RE | 1101 | CG8889-PE | 433..1101 | 416..1084 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mppe-RA | 1757 | CG8889-RA | 460..1528 | 17..1085 | 5345 | 100 | Plus |
| Mppe-RB | 1763 | CG8889-RB | 460..1534 | 17..1085 | 5250 | 99.4 | Plus |
| Mppe-RE | 1790 | CG8889-RE | 892..1561 | 416..1085 | 3350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12026092..12026572 | 896..416 | 2405 | 100 | Minus |
| 2R | 25286936 | 2R | 12026723..12026988 | 415..150 | 1330 | 100 | Minus |
| 2R | 25286936 | 2R | 12025843..12026032 | 1085..896 | 950 | 100 | Minus |
| 2R | 25286936 | 2R | 12027038..12027153 | 156..41 | 565 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:19:04 has no hits.
BS06668.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:10 Download gff for
BS06668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8889-RA | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:52:03 Download gff for
BS06668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8889-RA | 441..1511 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:05 Download gff for
BS06668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 460..1527 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:10 Download gff for
BS06668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8889-RA | 441..1511 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:44 Download gff for
BS06668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 460..1527 | 17..1084 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:44 Download gff for
BS06668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12025844..12026031 | 897..1084 | 100 | <- | Minus |
| 2R | 12026092..12026572 | 416..896 | 100 | <- | Minus |
| 2R | 12026723..12026985 | 153..415 | 100 | <- | Minus |
| 2R | 12027042..12027151 | 43..152 | 100 | <- | Minus |
| 2R | 12027223..12027248 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:05 Download gff for
BS06668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7913349..7913536 | 897..1084 | 100 | <- | Minus |
| arm_2R | 7913597..7914077 | 416..896 | 100 | <- | Minus |
| arm_2R | 7914228..7914490 | 153..415 | 100 | <- | Minus |
| arm_2R | 7914547..7914656 | 43..152 | 100 | <- | Minus |
| arm_2R | 7914728..7914753 | 17..42 | 100 | | Minus |
BS06668.pep Sequence
Translation from 16 to 1083
> BS06668.pep
MASLRVVNRLVCRGFVALTLLLVFFNEFIVYYMAQSSWQPIDCKLDNCTR
LLLIADPQILGNSYDRSSHSPLARYDSDRYLAKTFERALAFTQPHIIVFL
GDLLDEGNIATAQEYKQYVQRFRRIYQNKNYKKRVHVPGDNDIGGENGDY
ISNSNQRRFENEFMSEDLFDYDNRLRFFKINRMLLDFSNPDRDNNADRLR
IGVSHAPLLIGGGPLLRAIISDLDPHIIFSGHWHESRIFIYPSTKVINFY
ENSVRHFDLKALKEQEHSYLEIMVPTCSYRMGKSKIGLGYAVLENYNLSY
TVLWQPNRFILLFTYVFWGLFVVCGFVVFKMMTRCPFRVAKRQTLYNRVS
TIPQF*
BS06668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mppe-PA | 355 | CG8889-PA | 1..355 | 1..355 | 1882 | 100 | Plus |
| Mppe-PB | 357 | CG8889-PB | 1..357 | 1..355 | 1869 | 99.4 | Plus |
| Mppe-PD | 364 | CG8889-PD | 1..364 | 1..355 | 1862 | 97.5 | Plus |
| Mppe-PE | 366 | CG8889-PE | 1..366 | 1..355 | 1849 | 97 | Plus |
