Clone Sequence Records
BS06671.3prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-04
> BS06671.3prime
ATGGTCTAGAAAGCTTTCACCTGCAGCACTTCCCACCCTTGCTGCCCTTG
GGATTGGGCTTCAGATGGAGCGTGTCCTTCTGCTGCTCGTTGGGGGAGGT
GCGCAGCTTGTGATCGAGCACCTGTCGCGTAATCGACAAGAACATGTTCT
CCACGTTTATGTTGTCTTTGGCAGATGTCTCGAATAGCTCGATGTCCATT
TGTTTCGCAAACCGCTGCGCGTCTTCGGTAATGACCACCTTCCTGTCCGG
ATCGTCGTTCTTGTTGCCCACTAATACTTTTTTAACCACATCGCAGTTAT
TCTGGATCTCCTCCAGCCAGCGGCGGACGTTCGCAAAGGATTCGCCGTTC
GTGACGTCGTAGACGACAATGACGCCGTGGGTGCCGCGGTAGTAGGTGCT
GGTGATTGTCCGGAAGCGCTCCTGCCCGGCCGTGTCCCAGATCTGCAGCT
TTACGCGCATGCCCTCGATGTCCACGGTGCGGATCTTAAAGTCCACGCCG
ATGGTGGTGATGTAACTGCCTGAGAATGTGTCGTCCGAGAACCGGATGAG
CAGCGACGACTTGCCCACGCCGCTATCGCCGATTATTAGCAACTTGAATA
GATGATCGAAGCCGCGTGCCATGTCGACTGATAACT
BS06671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9575-PA | 606 | Rab35-RA | 1..606 | 622..17 | 3030 | 100 | Minus |
CG14791-PC | 693 | Rab27-RC | 196..233 | 448..411 | 140 | 94.7 | Minus |
CG14791-PB | 711 | Rab27-RB | 214..251 | 448..411 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-RB | 2024 | CG9575-RB | 926..1535 | 622..13 | 3050 | 100 | Minus |
Rab35-RD | 3348 | CG9575-RD | 926..1535 | 622..13 | 3050 | 100 | Minus |
Rab35-RA | 2635 | CG9575-RA | 926..1535 | 622..13 | 3050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20157970..20158270 | 271..571 | 1505 | 100 | Plus |
X | 23542271 | X | 20157579..20157838 | 13..272 | 1300 | 100 | Plus |
X | 23542271 | X | 20158895..20158947 | 570..622 | 265 | 100 | Plus |
X | 23542271 | X | 12461504..12461623 | 347..466 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:56:23 has no hits.
BS06671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:38 Download gff for
BS06671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-PA | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:17 Download gff for
BS06671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9575-PA | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:48 Download gff for
BS06671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 918..1539 | 8..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:00 Download gff for
BS06671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 918..1539 | 8..628 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:00 Download gff for
BS06671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20157575..20157836 | 8..270 | 98 | <- | Plus |
X | 20157970..20158269 | 271..570 | 100 | <- | Plus |
X | 20158896..20158955 | 571..628 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:48 Download gff for
BS06671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20051608..20051869 | 8..270 | 98 | <- | Plus |
arm_X | 20052003..20052302 | 271..570 | 100 | <- | Plus |
arm_X | 20052929..20052988 | 571..628 | 95 | | Plus |
BS06671.5prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-04
> BS06671.5prime
GAAGTTATCAGTCGACATGGCACGCGGCTTCGATCATCTATTCAAGTTGC
TAATAATCGGCGATAGCGGCGTGGGCAAGTCGTCGCTGCTCATCCGGTTC
TCGGACGACACATTCTCAGGCAGTTACATCACCACCATCGGCGTGGACTT
TAAGATCCGCACCGTGGACATCGAGGGCATGCGCGTAAAGCTGCAGATCT
GGGACACGGCCGGGCAGGAGCGCTTCCGGACAATCACCAGCACCTACTAC
CGCGGCACCCACGGCGTCATTGTCGTCTACGACGTCACGAACGGCGAATC
CTTTGCGAACGTCCGCCGCTGGCTGGAGGAGATCCAGAATAACTGCGATG
TGGTTAAAAAAGTATTAGTGGGCAACAAGAACGACGATCCGGACAGGAAG
GTGGTCATTACCGAAGACGCGCAGCGGTTTGCGAAACAAATGGACATCGA
GCTATTCGAGACATCTGCCAAAGACAACATAAACGTGGAGAACATGTTCT
TGTCGATTACGCGACAGGTGCTCGATCACAAGCTGCGCACCTCCCCCAAC
GAGCAGCAGAAGGACACGCTCCATCTGAAGCCCAATCCCAAGGGCAGCAA
GGGTGGGAAGTGCTGCAGGTGAAAGCTTTCTAGACC
BS06671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9575-PA | 606 | Rab35-RA | 1..606 | 17..622 | 3030 | 100 | Plus |
CG14791-PC | 693 | Rab27-RC | 196..233 | 191..228 | 140 | 94.7 | Plus |
CG14791-PB | 711 | Rab27-RB | 214..251 | 191..228 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-RB | 2024 | CG9575-RB | 926..1535 | 17..626 | 3050 | 100 | Plus |
Rab35-RD | 3348 | CG9575-RD | 926..1535 | 17..626 | 3050 | 100 | Plus |
Rab35-RA | 2635 | CG9575-RA | 926..1535 | 17..626 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20157970..20158270 | 368..68 | 1505 | 100 | Minus |
X | 23542271 | X | 20157579..20157838 | 626..367 | 1300 | 100 | Minus |
X | 23542271 | X | 20158895..20158947 | 69..17 | 265 | 100 | Minus |
X | 23542271 | X | 12461504..12461623 | 292..173 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:06:15 has no hits.
BS06671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:39 Download gff for
BS06671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-PA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:18 Download gff for
BS06671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9575-PA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:17 Download gff for
BS06671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 918..1539 | 11..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:03 Download gff for
BS06671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 918..1539 | 11..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:03 Download gff for
BS06671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20157575..20157836 | 369..631 | 98 | <- | Minus |
X | 20157970..20158269 | 69..368 | 100 | <- | Minus |
X | 20158896..20158955 | 11..68 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:17 Download gff for
BS06671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20051608..20051869 | 369..631 | 98 | <- | Minus |
arm_X | 20052003..20052302 | 69..368 | 100 | <- | Minus |
arm_X | 20052929..20052988 | 11..68 | 95 | | Minus |
BS06671.complete Sequence
638 bp (638 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635584
> BS06671.complete
GAAGTTATCAGTCGACATGGCACGCGGCTTCGATCATCTATTCAAGTTGC
TAATAATCGGCGATAGCGGCGTGGGCAAGTCGTCGCTGCTCATCCGGTTC
TCGGACGACACATTCTCAGGCAGTTACATCACCACCATCGGCGTGGACTT
TAAGATCCGCACCGTGGACATCGAGGGCATGCGCGTAAAGCTGCAGATCT
GGGACACGGCCGGGCAGGAGCGCTTCCGGACAATCACCAGCACCTACTAC
CGCGGCACCCACGGCGTCATTGTCGTCTACGACGTCACGAACGGCGAATC
CTTTGCGAACGTCCGCCGCTGGCTGGAGGAGATCCAGAATAACTGCGATG
TGGTTAAAAAAGTATTAGTGGGCAACAAGAACGACGATCCGGACAGGAAG
GTGGTCATTACCGAAGACGCGCAGCGGTTTGCGAAACAAATGGACATCGA
GCTATTCGAGACATCTGCCAAAGACAACATAAACGTGGAGAACATGTTCT
TGTCGATTACGCGACAGGTGCTCGATCACAAGCTGCGCACCTCCCCCAAC
GAGCAGCAGAAGGACACGCTCCATCTGAAGCCCAATCCCAAGGGCAGCAA
GGGTGGGAAGTGCTGCAGGTGAAAGCTTTCTAGACCAT
BS06671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-RB | 606 | CG9575-PB | 1..606 | 17..622 | 3030 | 100 | Plus |
Rab35-RD | 606 | CG9575-PD | 1..606 | 17..622 | 3030 | 100 | Plus |
Rab35-RA | 606 | CG9575-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-RB | 2024 | CG9575-RB | 926..1535 | 17..626 | 3050 | 100 | Plus |
Rab35-RD | 3348 | CG9575-RD | 926..1535 | 17..626 | 3050 | 100 | Plus |
Rab35-RA | 2635 | CG9575-RA | 926..1535 | 17..626 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20157970..20158270 | 368..68 | 1505 | 100 | Minus |
X | 23542271 | X | 20157579..20157838 | 626..367 | 1300 | 100 | Minus |
X | 23542271 | X | 20158895..20158947 | 69..17 | 265 | 100 | Minus |
X | 23542271 | X | 12461504..12461623 | 292..173 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:27 has no hits.
BS06671.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:11 Download gff for
BS06671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:04 Download gff for
BS06671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 884..1505 | 11..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:50 Download gff for
BS06671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 926..1530 | 17..621 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:57 Download gff for
BS06671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 926..1530 | 17..621 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:57 Download gff for
BS06671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20157584..20157836 | 369..621 | 100 | <- | Minus |
X | 20157970..20158269 | 69..368 | 100 | <- | Minus |
X | 20158896..20158947 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:50 Download gff for
BS06671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20051617..20051869 | 369..621 | 100 | <- | Minus |
arm_X | 20052003..20052302 | 69..368 | 100 | <- | Minus |
arm_X | 20052929..20052980 | 17..68 | 100 | | Minus |
BS06671.pep Sequence
Translation from 16 to 621
> BS06671.pep
MARGFDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTV
DIEGMRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFANVR
RWLEEIQNNCDVVKKVLVGNKNDDPDRKVVITEDAQRFAKQMDIELFETS
AKDNINVENMFLSITRQVLDHKLRTSPNEQQKDTLHLKPNPKGSKGGKCC
R*
BS06671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-PB | 201 | CG9575-PB | 1..201 | 1..201 | 1046 | 100 | Plus |
Rab35-PD | 201 | CG9575-PD | 1..201 | 1..201 | 1046 | 100 | Plus |
Rab35-PA | 201 | CG9575-PA | 1..201 | 1..201 | 1046 | 100 | Plus |
Rab35-PC | 190 | CG9575-PC | 8..190 | 19..201 | 953 | 100 | Plus |
Rab1-PA | 205 | CG3320-PA | 8..184 | 5..183 | 531 | 58.3 | Plus |