Clone BS06671 Report

Search the DGRC for BS06671

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptRab35-RA
Protein status:BS06671.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06671.3prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-04

> BS06671.3prime
ATGGTCTAGAAAGCTTTCACCTGCAGCACTTCCCACCCTTGCTGCCCTTG
GGATTGGGCTTCAGATGGAGCGTGTCCTTCTGCTGCTCGTTGGGGGAGGT
GCGCAGCTTGTGATCGAGCACCTGTCGCGTAATCGACAAGAACATGTTCT
CCACGTTTATGTTGTCTTTGGCAGATGTCTCGAATAGCTCGATGTCCATT
TGTTTCGCAAACCGCTGCGCGTCTTCGGTAATGACCACCTTCCTGTCCGG
ATCGTCGTTCTTGTTGCCCACTAATACTTTTTTAACCACATCGCAGTTAT
TCTGGATCTCCTCCAGCCAGCGGCGGACGTTCGCAAAGGATTCGCCGTTC
GTGACGTCGTAGACGACAATGACGCCGTGGGTGCCGCGGTAGTAGGTGCT
GGTGATTGTCCGGAAGCGCTCCTGCCCGGCCGTGTCCCAGATCTGCAGCT
TTACGCGCATGCCCTCGATGTCCACGGTGCGGATCTTAAAGTCCACGCCG
ATGGTGGTGATGTAACTGCCTGAGAATGTGTCGTCCGAGAACCGGATGAG
CAGCGACGACTTGCCCACGCCGCTATCGCCGATTATTAGCAACTTGAATA
GATGATCGAAGCCGCGTGCCATGTCGACTGATAACT

BS06671.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9575-PA 606 Rab35-RA 1..606 622..17 3030 100 Minus
CG14791-PC 693 Rab27-RC 196..233 448..411 140 94.7 Minus
CG14791-PB 711 Rab27-RB 214..251 448..411 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rab35-RB 2024 CG9575-RB 926..1535 622..13 3050 100 Minus
Rab35-RD 3348 CG9575-RD 926..1535 622..13 3050 100 Minus
Rab35-RA 2635 CG9575-RA 926..1535 622..13 3050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20157970..20158270 271..571 1505 100 Plus
X 23542271 X 20157579..20157838 13..272 1300 100 Plus
X 23542271 X 20158895..20158947 570..622 265 100 Plus
X 23542271 X 12461504..12461623 347..466 195 77.5 Plus
Blast to na_te.dros performed on 2015-02-11 16:56:23 has no hits.

BS06671.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:38 Download gff for BS06671.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab35-PA 1..606 17..622 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:17 Download gff for BS06671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9575-PA 1..606 17..622 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:48 Download gff for BS06671.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab35-RA 918..1539 8..628 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:00 Download gff for BS06671.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab35-RA 918..1539 8..628 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:00 Download gff for BS06671.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20157575..20157836 8..270 98 <- Plus
X 20157970..20158269 271..570 100 <- Plus
X 20158896..20158955 571..628 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:48 Download gff for BS06671.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20051608..20051869 8..270 98 <- Plus
arm_X 20052003..20052302 271..570 100 <- Plus
arm_X 20052929..20052988 571..628 95   Plus

BS06671.5prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-04

> BS06671.5prime
GAAGTTATCAGTCGACATGGCACGCGGCTTCGATCATCTATTCAAGTTGC
TAATAATCGGCGATAGCGGCGTGGGCAAGTCGTCGCTGCTCATCCGGTTC
TCGGACGACACATTCTCAGGCAGTTACATCACCACCATCGGCGTGGACTT
TAAGATCCGCACCGTGGACATCGAGGGCATGCGCGTAAAGCTGCAGATCT
GGGACACGGCCGGGCAGGAGCGCTTCCGGACAATCACCAGCACCTACTAC
CGCGGCACCCACGGCGTCATTGTCGTCTACGACGTCACGAACGGCGAATC
CTTTGCGAACGTCCGCCGCTGGCTGGAGGAGATCCAGAATAACTGCGATG
TGGTTAAAAAAGTATTAGTGGGCAACAAGAACGACGATCCGGACAGGAAG
GTGGTCATTACCGAAGACGCGCAGCGGTTTGCGAAACAAATGGACATCGA
GCTATTCGAGACATCTGCCAAAGACAACATAAACGTGGAGAACATGTTCT
TGTCGATTACGCGACAGGTGCTCGATCACAAGCTGCGCACCTCCCCCAAC
GAGCAGCAGAAGGACACGCTCCATCTGAAGCCCAATCCCAAGGGCAGCAA
GGGTGGGAAGTGCTGCAGGTGAAAGCTTTCTAGACC

BS06671.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9575-PA 606 Rab35-RA 1..606 17..622 3030 100 Plus
CG14791-PC 693 Rab27-RC 196..233 191..228 140 94.7 Plus
CG14791-PB 711 Rab27-RB 214..251 191..228 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rab35-RB 2024 CG9575-RB 926..1535 17..626 3050 100 Plus
Rab35-RD 3348 CG9575-RD 926..1535 17..626 3050 100 Plus
Rab35-RA 2635 CG9575-RA 926..1535 17..626 3050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20157970..20158270 368..68 1505 100 Minus
X 23542271 X 20157579..20157838 626..367 1300 100 Minus
X 23542271 X 20158895..20158947 69..17 265 100 Minus
X 23542271 X 12461504..12461623 292..173 195 77.5 Minus
Blast to na_te.dros performed on 2015-02-12 07:06:15 has no hits.

BS06671.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:39 Download gff for BS06671.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab35-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:18 Download gff for BS06671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9575-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:17 Download gff for BS06671.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab35-RA 918..1539 11..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:03 Download gff for BS06671.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab35-RA 918..1539 11..631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:03 Download gff for BS06671.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20157575..20157836 369..631 98 <- Minus
X 20157970..20158269 69..368 100 <- Minus
X 20158896..20158955 11..68 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:17 Download gff for BS06671.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20051608..20051869 369..631 98 <- Minus
arm_X 20052003..20052302 69..368 100 <- Minus
arm_X 20052929..20052988 11..68 95   Minus

BS06671.complete Sequence

638 bp (638 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635584

> BS06671.complete
GAAGTTATCAGTCGACATGGCACGCGGCTTCGATCATCTATTCAAGTTGC
TAATAATCGGCGATAGCGGCGTGGGCAAGTCGTCGCTGCTCATCCGGTTC
TCGGACGACACATTCTCAGGCAGTTACATCACCACCATCGGCGTGGACTT
TAAGATCCGCACCGTGGACATCGAGGGCATGCGCGTAAAGCTGCAGATCT
GGGACACGGCCGGGCAGGAGCGCTTCCGGACAATCACCAGCACCTACTAC
CGCGGCACCCACGGCGTCATTGTCGTCTACGACGTCACGAACGGCGAATC
CTTTGCGAACGTCCGCCGCTGGCTGGAGGAGATCCAGAATAACTGCGATG
TGGTTAAAAAAGTATTAGTGGGCAACAAGAACGACGATCCGGACAGGAAG
GTGGTCATTACCGAAGACGCGCAGCGGTTTGCGAAACAAATGGACATCGA
GCTATTCGAGACATCTGCCAAAGACAACATAAACGTGGAGAACATGTTCT
TGTCGATTACGCGACAGGTGCTCGATCACAAGCTGCGCACCTCCCCCAAC
GAGCAGCAGAAGGACACGCTCCATCTGAAGCCCAATCCCAAGGGCAGCAA
GGGTGGGAAGTGCTGCAGGTGAAAGCTTTCTAGACCAT

BS06671.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rab35-RB 606 CG9575-PB 1..606 17..622 3030 100 Plus
Rab35-RD 606 CG9575-PD 1..606 17..622 3030 100 Plus
Rab35-RA 606 CG9575-PA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Rab35-RB 2024 CG9575-RB 926..1535 17..626 3050 100 Plus
Rab35-RD 3348 CG9575-RD 926..1535 17..626 3050 100 Plus
Rab35-RA 2635 CG9575-RA 926..1535 17..626 3050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20157970..20158270 368..68 1505 100 Minus
X 23542271 X 20157579..20157838 626..367 1300 100 Minus
X 23542271 X 20158895..20158947 69..17 265 100 Minus
X 23542271 X 12461504..12461623 292..173 195 77.5 Minus
Blast to na_te.dros performed on 2014-11-27 13:53:27 has no hits.

BS06671.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:11 Download gff for BS06671.complete
Subject Subject Range Query Range Percent Splice Strand
Rab35-RA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:04 Download gff for BS06671.complete
Subject Subject Range Query Range Percent Splice Strand
Rab35-RA 884..1505 11..631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:50 Download gff for BS06671.complete
Subject Subject Range Query Range Percent Splice Strand
Rab35-RA 926..1530 17..621 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:57 Download gff for BS06671.complete
Subject Subject Range Query Range Percent Splice Strand
Rab35-RA 926..1530 17..621 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:57 Download gff for BS06671.complete
Subject Subject Range Query Range Percent Splice Strand
X 20157584..20157836 369..621 100 <- Minus
X 20157970..20158269 69..368 100 <- Minus
X 20158896..20158947 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:50 Download gff for BS06671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20051617..20051869 369..621 100 <- Minus
arm_X 20052003..20052302 69..368 100 <- Minus
arm_X 20052929..20052980 17..68 100   Minus

BS06671.pep Sequence

Translation from 16 to 621

> BS06671.pep
MARGFDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTV
DIEGMRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFANVR
RWLEEIQNNCDVVKKVLVGNKNDDPDRKVVITEDAQRFAKQMDIELFETS
AKDNINVENMFLSITRQVLDHKLRTSPNEQQKDTLHLKPNPKGSKGGKCC
R*

BS06671.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rab35-PB 201 CG9575-PB 1..201 1..201 1046 100 Plus
Rab35-PD 201 CG9575-PD 1..201 1..201 1046 100 Plus
Rab35-PA 201 CG9575-PA 1..201 1..201 1046 100 Plus
Rab35-PC 190 CG9575-PC 8..190 19..201 953 100 Plus
Rab1-PA 205 CG3320-PA 8..184 5..183 531 58.3 Plus