Clone Sequence Records
BS06676.3prime Sequence
844 bp (843 high quality bases) assembled on 2005-12-04
> BS06676.3prime
ATGGTCTAGAAAGCTTCTAAAATCTTGCCCTTTTAACAAACGATTTACCA
CCATTCTCTTGTGCCGGGCGCTTGTTAAATGGTTTTTTACCAAAGTTTGG
CTTAGTGTCCTTTTGGAACTTCCGCGGGGCGCGGGTCTGACCAATAGCTA
AGCGTTTCTTTAACAATCTATGCTTCAGCAGAGAGTTTGGCTCAATAAAT
ATAGGGGCGTTGTTTACAATGCTTTCATTAGCCAAGAAAGATTTGCAGAA
ACCCTCATCGTCCTTGAACTTTACTACCGCTTTTTGGCCCAACATTATGA
TGCTTTCGATTTCGCCGCTATCGTTAAACACTTTCCGCAGGTCGGCTTCA
GTAGCATCTGAAGTCAAGTTCGTCACAAGAATGGCCCTCCCCGAGGTGCT
GCGTTCGAATCGGTGAAGCTTCCACTCAAACTTATTAACAGTCTTTCCGT
CGAGTTGTGCTAAAGCCTTCGTGGCGGCATCCGACTGCTTGAACGTGACA
AAAGCTAAAACTGCCTTGCTGCACACAACGTCGATTTCTTCAACATCACC
AAATTTTTTGAATATCTTTTCTAGAGCGTCGGAGCTGTAAGACTCGTGTT
TGCCCACATTTTCGACAACCAAGGTAAGTTCACTGGTACGTGAAATCGAT
TCTTGTGAGATCCGACGAACCGTTATAAAGCGAGAAAACAGCTCAGTGCT
ATGCAGTTTAAGAGCCTTCGGTATGTCATCGACCGACGCCAAACGTACAA
AAGCTCTGGGCATGAGGCGGTTACTGGATATAGTCACCGCCTCCACGGGA
GCTACCTTCTCAAAAAAGGTTTTTAAGTCGTCCTTGGTAATATT
BS06676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2050-PA | 1629 | mod-RA | 802..1629 | 844..17 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1954 | CG2050-RC | 917..1746 | 844..15 | 4150 | 100 | Minus |
| mod-RA | 2287 | CG2050-RA | 1250..2079 | 844..15 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32053871..32054357 | 844..358 | 2435 | 100 | Minus |
| 3R | 32079331 | 3R | 32054422..32054766 | 359..15 | 1725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:51:44 has no hits.
BS06676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:48:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:25 Download gff for
BS06676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2050-PA | 802..1629 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:48:08 Download gff for
BS06676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 1250..2082 | 11..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:18 Download gff for
BS06676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 1250..2082 | 11..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:18 Download gff for
BS06676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32053871..32054357 | 358..844 | 100 | -> | Minus |
| 3R | 32054424..32054769 | 11..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:48:08 Download gff for
BS06676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27879593..27880079 | 358..844 | 100 | -> | Minus |
| arm_3R | 27880146..27880491 | 11..357 | 99 | | Minus |
BS06676.5prime Sequence
946 bp (864 high quality bases) assembled on 2005-12-04
> BS06676.5prime
GAAGTTATCAGTCGACATGGCCCAAAAGAAAGCCGTCACCGTCAAAGGAA
AAAAAGCTACGAATGGAGAGGAAAAGCCTTTGGCCAAACGGGTAACCAAG
TCCACAAAGGTACAGGAAGAGGAGACAGTAGTCCCCCAATCGCCTTCCAA
AAAATCCAGAAAACAGCCTGTTAAAGAAGTGCCGCAGTTCAGTGAAGAGG
ACGAGTCTGATGTGGAGGAGCAAAATGACGAGCAGCCAGGGGACGACAGC
GACTTTGAGACCGAAGAGGCAGCGGGCTTAATTGACGACGAGGCTGAGGA
AGATGAAGAGTACAATAGTGACGATGAGGAAGATGATGATGACGATGAGT
TGGAGCCTGGTGAGGTTTCCAAAAGTGAAGGCGCGGATGAGGTAGATGAA
TCCGATGATGATGAAGAAGCGCCTGTAGAGAAGCCAGTTTCCAAGAAATC
AGAAAAAGCCAACTCTGAAAAGTCCGAAGAAAATAGAGGAATTCCAAAAG
TAAAGGTTGGCAAGATTCCGCTGGGAACGCCAAAAAACCAGATCGTTTTT
GTCACAAACCTACCAAACGAGTATCTCCACAAGGACTTGGTCGCATTGTT
CGCCAAGTTCGGACGACTTTCCGCTTTGCAGCGTTTCACTAATTTGAATG
GCAATAAATCAGTTCTCATTGCCTTTGATACGTCAACTGGAGCAGAAGCT
GTTCTGCAGGCTAAGCCTAAAGCGTTAACCCTTGGAGACAATGTTTTGTC
TGTGTCCCAACCGAGAAATAAGGAAGAGAACAACGAACGCACGGTGGTGG
TTGGCCTGATTGGACCTAATATTACCAAGGACGACTTAAAAACCTTTTTT
GAGAAGGTAGCTCCCGTGGAGGCGGTGACTATATCCAGTAACCGCCTCAT
GCCCAGAGCTTTTGTACGTTTGGCGTCGGTCGATGACATACCGGAA
BS06676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2050-PA | 1629 | mod-RA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1954 | CG2050-RC | 116..1042 | 17..943 | 4635 | 100 | Plus |
| mod-RA | 2287 | CG2050-RA | 449..1375 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32053622..32053996 | 569..943 | 1875 | 100 | Plus |
| 3R | 32079331 | 3R | 32053240..32053555 | 254..569 | 1565 | 99.7 | Plus |
| 3R | 32079331 | 3R | 32052735..32052977 | 17..259 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:11:49 has no hits.
BS06676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 08:48:45 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:27 Download gff for
BS06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2050-PA | 1..927 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:32 Download gff for
BS06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 443..1377 | 11..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:31 Download gff for
BS06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 443..1377 | 11..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:31 Download gff for
BS06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32052729..32052977 | 11..259 | 99 | -> | Plus |
| 3R | 32053246..32053555 | 260..569 | 100 | -> | Plus |
| 3R | 32053623..32053998 | 570..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:32 Download gff for
BS06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27878451..27878699 | 11..259 | 99 | -> | Plus |
| arm_3R | 27878968..27879277 | 260..569 | 100 | -> | Plus |
| arm_3R | 27879345..27879720 | 570..946 | 99 | | Plus |
BS06676.complete Sequence
1661 bp (1661 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635586
> BS06676.complete
GAAGTTATCAGTCGACATGGCCCAAAAGAAAGCCGTCACCGTCAAAGGAA
AAAAAGCTACGAATGGAGAGGAAAAGCCTTTGGCCAAACGGGTAACCAAG
TCCACAAAGGTACAGGAAGAGGAGACAGTAGTCCCCCAATCGCCTTCCAA
AAAATCCAGAAAACAGCCTGTTAAAGAAGTGCCGCAGTTCAGTGAAGAGG
ACGAGTCTGATGTGGAGGAGCAAAATGACGAGCAGCCAGGGGACGACAGC
GACTTTGAGACCGAAGAGGCAGCGGGCTTAATTGACGACGAGGCTGAGGA
AGATGAAGAGTACAATAGTGACGATGAGGAAGATGATGATGACGATGAGT
TGGAGCCTGGTGAGGTTTCCAAAAGTGAAGGCGCGGATGAGGTAGATGAA
TCCGATGATGATGAAGAAGCGCCTGTAGAGAAGCCAGTTTCCAAGAAATC
AGAAAAAGCCAACTCTGAAAAGTCCGAAGAAAATAGAGGAATTCCAAAAG
TAAAGGTTGGCAAGATTCCGCTGGGAACGCCAAAAAACCAGATCGTTTTT
GTCACAAACCTACCAAACGAGTATCTCCACAAGGACTTGGTCGCATTGTT
CGCCAAGTTCGGACGACTTTCCGCTTTGCAGCGTTTCACTAATTTGAATG
GCAATAAATCAGTTCTCATTGCCTTTGATACGTCAACTGGAGCAGAAGCT
GTTCTGCAGGCTAAGCCTAAAGCGTTAACCCTTGGAGACAATGTTTTGTC
TGTGTCCCAACCGAGAAATAAGGAAGAGAACAACGAACGCACGGTGGTGG
TTGGCCTGATTGGACCTAATATTACCAAGGACGACTTAAAAACCTTTTTT
GAGAAGGTAGCTCCCGTGGAGGCGGTGACTATATCCAGTAACCGCCTCAT
GCCCAGAGCTTTTGTACGTTTGGCGTCGGTCGATGACATACCGAAGGCTC
TTAAACTGCATAGCACTGAGCTGTTTTCTCGCTTTATAACGGTTCGTCGG
ATCTCACAAGAATCGATTTCACGTACCAGTGAACTTACCTTGGTTGTCGA
AAATGTGGGCAAACACGAGTCTTACAGCTCCGACGCTCTAGAAAAGATAT
TCAAAAAATTTGGTGATGTTGAAGAAATCGACGTTGTGTGCAGCAAGGCA
GTTTTAGCTTTTGTCACGTTCAAGCAGTCGGATGCCGCCACGAAGGCTTT
AGCACAACTCGACGGAAAGACTGTTAATAAGTTTGAGTGGAAGCTTCACC
GATTCGAACGCAGCACCTCGGGGAGGGCCATTCTTGTGACGAACTTGACT
TCAGATGCTACTGAAGCCGACCTGCGGAAAGTGTTTAACGATAGCGGCGA
AATCGAAAGCATCATAATGTTGGGCCAAAAAGCGGTAGTAAAGTTCAAGG
ACGATGAGGGTTTCTGCAAATCTTTCTTGGCTAATGAAAGCATTGTAAAC
AACGCCCCTATATTTATTGAGCCAAACTCTCTGCTGAAGCATAGATTGTT
AAAGAAACGCTTAGCTATTGGTCAGACCCGCGCCCCGCGGAAGTTCCAAA
AGGACACTAAGCCAAACTTTGGTAAAAAACCATTTAACAAGCGCCCGGCA
CAAGAGAATGGTGGTAAATCGTTTGTTAAAAGGGCAAGATTTTAGAAGCT
TTCTAGACCAT
BS06676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1629 | CG2050-PC | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| mod-RA | 1629 | CG2050-PA | 1..1629 | 17..1645 | 8145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1954 | CG2050-RC | 116..1746 | 17..1647 | 8155 | 100 | Plus |
| mod-RA | 2287 | CG2050-RA | 449..2079 | 17..1647 | 8155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32053622..32054357 | 569..1304 | 3680 | 100 | Plus |
| 3R | 32079331 | 3R | 32054422..32054766 | 1303..1647 | 1725 | 100 | Plus |
| 3R | 32079331 | 3R | 32053240..32053555 | 254..569 | 1565 | 99.7 | Plus |
| 3R | 32079331 | 3R | 32052735..32052977 | 17..259 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:44:56 has no hits.
BS06676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:59 Download gff for
BS06676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 1..1629 | 17..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:49 Download gff for
BS06676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 431..2070 | 11..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:59 Download gff for
BS06676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 449..2077 | 17..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:59 Download gff for
BS06676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 431..2070 | 11..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:24 Download gff for
BS06676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 449..2077 | 17..1645 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:24 Download gff for
BS06676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32054424..32054764 | 1305..1645 | 100 | | Plus |
| 3R | 32052735..32052977 | 17..259 | 100 | -> | Plus |
| 3R | 32053246..32053555 | 260..569 | 100 | -> | Plus |
| 3R | 32053623..32054357 | 570..1304 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:59 Download gff for
BS06676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27878457..27878699 | 17..259 | 100 | -> | Plus |
| arm_3R | 27878968..27879277 | 260..569 | 100 | -> | Plus |
| arm_3R | 27879345..27880079 | 570..1304 | 100 | -> | Plus |
| arm_3R | 27880146..27880486 | 1305..1645 | 100 | | Plus |
BS06676.pep Sequence
Translation from 16 to 1644
> BS06676.pep
MAQKKAVTVKGKKATNGEEKPLAKRVTKSTKVQEEETVVPQSPSKKSRKQ
PVKEVPQFSEEDESDVEEQNDEQPGDDSDFETEEAAGLIDDEAEEDEEYN
SDDEEDDDDDELEPGEVSKSEGADEVDESDDDEEAPVEKPVSKKSEKANS
EKSEENRGIPKVKVGKIPLGTPKNQIVFVTNLPNEYLHKDLVALFAKFGR
LSALQRFTNLNGNKSVLIAFDTSTGAEAVLQAKPKALTLGDNVLSVSQPR
NKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVTISSNRLMPRAFV
RLASVDDIPKALKLHSTELFSRFITVRRISQESISRTSELTLVVENVGKH
ESYSSDALEKIFKKFGDVEEIDVVCSKAVLAFVTFKQSDAATKALAQLDG
KTVNKFEWKLHRFERSTSGRAILVTNLTSDATEADLRKVFNDSGEIESII
MLGQKAVVKFKDDEGFCKSFLANESIVNNAPIFIEPNSLLKHRLLKKRLA
IGQTRAPRKFQKDTKPNFGKKPFNKRPAQENGGKSFVKRARF*
BS06676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-PC | 542 | CG2050-PC | 1..542 | 1..542 | 2725 | 100 | Plus |
| mod-PA | 542 | CG2050-PA | 1..542 | 1..542 | 2725 | 100 | Plus |
