Clone Sequence Records
BS06677.3prime Sequence
929 bp (834 high quality bases) assembled on 2005-12-04
> BS06677.3prime
ATGGTCTAGAAAGCTTTCACTCGGATGAGTAGAGCTTTTTCTTGGTCAGC
GTGAAGTCGGGACTGATGTTGATGGTATTGCTACGAGTAAGGTTTTTTAT
AAACTGCGGCACCAAGGAGCTCCAGCCGCTCTTGTCCTGCCTCAATGTCA
AGTACAGCTCGAAGATGGACACCGTGTCCGGATCCACTTTAAAGTATGCA
ATGCGCTTGACTTTGTTGGGCTCGCTCTCGAACTCAATGAAGAGCGTGCA
GGCCCGCTCGCCGCATGGTTCCCGCTCCGACATCCGGATGATCTCGGCGG
CGATGCGCTGCGTGAGGTCGTTGGGCAGCGTGACCTCGGTACAGGCCAGG
TGGCGACGCTTGGCATCCCGTAGCTGAGCCTGCAGTTGCTGCGACAGTTC
CCGCACTGCGCTGGCGCTCACATCGTCCAAGTTGTCGGCGGCCCCAAACC
GAGCGCAGGCGGTCGACTGCAGCGGCGATGCGGGCAGTGGGTGGTGCTGC
TGGGCGGTGCTGGACAGCACGTTGGTCATGTAGGCGTGATGATAGGCGGC
TGCACTGCCACCGCTAAGGGGCGCCTCAAAACTGGCCGCGGCCACCGGCG
ACGTGGCCTGTTTGGGAGTGGTCATACCGACGGATCCTCCGCCCGCCAAC
GGACCACCGCCCCCTGCCGATGGAGGCGTGGCCGATGGGCGGGTGTTGAG
CGCCTGGTGCTGTCGCATGTGGAGCACAGAGGCTGGATGGCCATCTACCA
CGTCGACGTCCAGAATGCCCTCGCCGGCGGCTGTGTTCCCGTTCACGCCT
GCGGTCAGCTCCTCCTCCTCCTCCAGCGGCGCCGTAGAAGCTTGCCAGTC
TTTTATTTTATTAACACCGAATTTTTCCCTGATGTGATTTTGTACTGAGA
GCACTTCCATCTTCATGTCGACTGATAAC
BS06677.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7533-PC | 900 | chrb-RC | 42..900 | 875..17 | 4270 | 99.8 | Minus |
CG7533-PC | 900 | chrb-RC | 1..35 | 916..882 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-RC | 5845 | CG7533-RC | 986..1885 | 916..17 | 4440 | 99.7 | Minus |
chrb-RE | 4908 | CG7533-RE | 114..948 | 851..17 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11494088..11494733 | 851..206 | 3230 | 100 | Minus |
3L | 28110227 | 3L | 11494846..11494956 | 206..96 | 555 | 100 | Minus |
3L | 28110227 | 3L | 11495017..11495095 | 95..17 | 395 | 100 | Minus |
3L | 28110227 | 3L | 11488535..11488601 | 916..850 | 260 | 92.5 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:55:39 has no hits.
BS06677.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:46 Download gff for
BS06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7533-PC | 1..900 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:28 Download gff for
BS06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7533-PC | 1..900 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 18:59:58 Download gff for
BS06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 983..1885 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:13 Download gff for
BS06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 983..1885 | 17..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:13 Download gff for
BS06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11488532..11488601 | 850..921 | 91 | -> | Minus |
3L | 11494090..11494732 | 207..849 | 100 | -> | Minus |
3L | 11494846..11494956 | 96..206 | 100 | -> | Minus |
3L | 11495017..11495095 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 18:59:58 Download gff for
BS06677.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11481632..11481701 | 850..921 | 91 | -> | Minus |
arm_3L | 11487190..11487832 | 207..849 | 100 | -> | Minus |
arm_3L | 11487946..11488056 | 96..206 | 100 | -> | Minus |
arm_3L | 11488117..11488195 | 17..95 | 100 | | Minus |
BS06677.5prime Sequence
869 bp (827 high quality bases) assembled on 2005-12-04
> BS06677.5prime
GAAGTTATCAGTCGACATGAAGATGGAAGTGCTCTCAGTACAAAATCACA
TTCAGGGAAAATTCGGTGTTAATAAAATTAAAGACTGGCAAGCTTCTACG
GCGCCGCTGGAGGAGGAGGAGGAGCTGACCGCAGGCGTGAACGGGAACAC
AGCCGCCGGCGAGGGCATTCTGGACGTCGACGTGGTAGATGGCCATCCAG
CCTCTGTGCTCCACATGCGACAGCACCAGGCGCTCAACACCCGCCCATCG
GCCACGCCTCCATCGGCAGGGGGCGGTGGTCCGTTGGCGGGCGGAGGATC
CGTCGGTATGACCACTCCCAAACAGGCCACGTCGCCGGTGGCCGCGGCCA
GTTTTGAGGCGCCCCTTAGCGGTGGCAGTGCAGCCGCCTATCATCACGCC
TACATGACCAACGTGCTGTCCAGCACCGCCCAGCAGCACCACCCACTGCC
CGCATCGCCGCTGCAGTCGACCGCCTGCGCTCGGTTTGGGGCCGCCGACA
ACTTGGACGATGTGAGCGCCAGCGCAGTGCGGGAACTGTCGCAGCAACTG
CAGGCTCAGCTACGGGATGCCAAGCGTCGCCACCTGGCCTGTACCGAGGT
CACGCTGCCCAACGACCTCACGCAGCGCATCGCCGCCGAGATCATCCGGA
TGTCGGAGCGGGAACCATGCGGCGAGCGGGCCTGCACGCTCTTCATTGAG
TTCGAGAGCGAGCCCAACAAAGTCAAGCGCATTGCATACTTTAAAGTGGA
TCCGGACACGGTGTCCATCTTCGAGCTGTACTTGACATTGAGGCAGGACA
AGAGCGGCTGGAGCTCCTTGGTGCCGCAGTTTATAAAAAACTTTACTCGT
AGCAATACATCAACATCAG
BS06677.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7533-PC | 900 | chrb-RC | 1..842 | 17..858 | 4185 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-RC | 5845 | CG7533-RC | 986..1839 | 17..869 | 4230 | 99.8 | Plus |
chrb-RE | 4908 | CG7533-RE | 114..902 | 82..869 | 3905 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11494088..11494733 | 82..727 | 3230 | 100 | Plus |
3L | 28110227 | 3L | 11494846..11494956 | 727..837 | 555 | 100 | Plus |
3L | 28110227 | 3L | 11488535..11488601 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:58:37 has no hits.
BS06677.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:48 Download gff for
BS06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7533-PC | 1..854 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:30 Download gff for
BS06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7533-PC | 1..854 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:30:04 Download gff for
BS06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 983..1839 | 12..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:25 Download gff for
BS06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 983..1839 | 12..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:25 Download gff for
BS06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11488532..11488601 | 12..83 | 95 | -> | Plus |
3L | 11494090..11494732 | 84..726 | 100 | -> | Plus |
3L | 11494846..11494956 | 727..837 | 100 | -> | Plus |
3L | 11495017..11495049 | 838..869 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:30:04 Download gff for
BS06677.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11481632..11481701 | 12..83 | 95 | -> | Plus |
arm_3L | 11487190..11487832 | 84..726 | 100 | -> | Plus |
arm_3L | 11487946..11488056 | 727..837 | 100 | -> | Plus |
arm_3L | 11488117..11488149 | 838..869 | 93 | | Plus |
BS06677.complete Sequence
932 bp (932 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635587
> BS06677.complete
GAAGTTATCAGTCGACATGAAGATGGAAGTGCTCTCAGTACAAAATCACA
TTCAGGGAAAATTCGGTGTTAATAAAATTAAAGACTGGCAAGCTTCTACG
GCGCCGCTGGAGGAGGAGGAGGAGCTGACCGCAGGCGTGAACGGGAACAC
AGCCGCCGGCGAGGGCATTCTGGACGTCGACGTGGTAGATGGCCATCCAG
CCTCTGTGCTCCACATGCGACAGCACCAGGCGCTCAACACCCGCCCATCG
GCCACGCCTCCATCGGCAGGGGGCGGTGGTCCGTTGGCGGGCGGAGGATC
CGTCGGTATGACCACTCCCAAACAGGCCACGTCGCCGGTGGCCGCGGCCA
GTTTTGAGGCGCCCCTTAGCGGTGGCAGTGCAGCCGCCTATCATCACGCC
TACATGACCAACGTGCTGTCCAGCACCGCCCAGCAGCACCACCCACTGCC
CGCATCGCCGCTGCAGTCGACCGCCTGCGCTCGGTTTGGGGCCGCCGACA
ACTTGGACGATGTGAGCGCCAGCGCAGTGCGGGAACTGTCGCAGCAACTG
CAGGCTCAGCTACGGGATGCCAAGCGTCGCCACCTGGCCTGTACCGAGGT
CACGCTGCCCAACGACCTCACGCAGCGCATCGCCGCCGAGATCATCCGGA
TGTCGGAGCGGGAACCATGCGGCGAGCGGGCCTGCACGCTCTTCATTGAG
TTCGAGAGCGAGCCCAACAAAGTCAAGCGCATTGCATACTTTAAAGTGGA
TCCGGACACGGTGTCCATCTTCGAGCTGTACTTGACATTGAGGCAGGACA
AGAGCGGCTGGAGCTCCTTGGTGCCGCAGTTTATAAAAAACCTTACTCGT
AGCAATACCATCAACATCAGTCCCGACTTCACGCTGACCAAGAAAAAGCT
CTACTCATCCGAGTGAAAGCTTTCTAGACCAT
BS06677.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-RC | 900 | CG7533-PC | 1..900 | 17..916 | 4500 | 100 | Plus |
chrb-RE | 702 | CG7533-PE | 1..702 | 215..916 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-RC | 5845 | CG7533-RC | 986..1885 | 17..916 | 4500 | 100 | Plus |
chrb-RE | 4908 | CG7533-RE | 114..948 | 82..916 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11494088..11494733 | 82..727 | 3230 | 100 | Plus |
3L | 28110227 | 3L | 11494846..11494956 | 727..837 | 555 | 100 | Plus |
3L | 28110227 | 3L | 11495017..11495095 | 838..916 | 395 | 100 | Plus |
3L | 28110227 | 3L | 11488535..11488601 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:59:12 has no hits.
BS06677.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:00 Download gff for
BS06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:51 Download gff for
BS06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 973..1875 | 12..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:38 Download gff for
BS06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 986..1884 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:01 Download gff for
BS06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 973..1875 | 12..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:45 Download gff for
BS06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 986..1884 | 17..915 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:45 Download gff for
BS06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11488535..11488601 | 17..83 | 100 | -> | Plus |
3L | 11494090..11494732 | 84..726 | 100 | -> | Plus |
3L | 11494846..11494956 | 727..837 | 100 | -> | Plus |
3L | 11495017..11495094 | 838..915 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:38 Download gff for
BS06677.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11481635..11481701 | 17..83 | 100 | -> | Plus |
arm_3L | 11487190..11487832 | 84..726 | 100 | -> | Plus |
arm_3L | 11487946..11488056 | 727..837 | 100 | -> | Plus |
arm_3L | 11488117..11488194 | 838..915 | 100 | | Plus |
BS06677.pep Sequence
Translation from 16 to 915
> BS06677.pep
MKMEVLSVQNHIQGKFGVNKIKDWQASTAPLEEEEELTAGVNGNTAAGEG
ILDVDVVDGHPASVLHMRQHQALNTRPSATPPSAGGGGPLAGGGSVGMTT
PKQATSPVAAASFEAPLSGGSAAAYHHAYMTNVLSSTAQQHHPLPASPLQ
STACARFGAADNLDDVSASAVRELSQQLQAQLRDAKRRHLACTEVTLPND
LTQRIAAEIIRMSEREPCGERACTLFIEFESEPNKVKRIAYFKVDPDTVS
IFELYLTLRQDKSGWSSLVPQFIKNLTRSNTINISPDFTLTKKKLYSSE*
BS06677.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-PC | 299 | CG7533-PC | 1..299 | 1..299 | 1533 | 100 | Plus |
chrb-PE | 233 | CG7533-PE | 1..233 | 67..299 | 1193 | 100 | Plus |
scyl-PC | 280 | CG7590-PC | 49..254 | 92..299 | 419 | 45.6 | Plus |
scyl-PA | 280 | CG7590-PA | 49..254 | 92..299 | 419 | 45.6 | Plus |