Clone BS06677 Report

Search the DGRC for BS06677

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptchrb-RC
Protein status:BS06677.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06677.3prime Sequence

929 bp (834 high quality bases) assembled on 2005-12-04

> BS06677.3prime
ATGGTCTAGAAAGCTTTCACTCGGATGAGTAGAGCTTTTTCTTGGTCAGC
GTGAAGTCGGGACTGATGTTGATGGTATTGCTACGAGTAAGGTTTTTTAT
AAACTGCGGCACCAAGGAGCTCCAGCCGCTCTTGTCCTGCCTCAATGTCA
AGTACAGCTCGAAGATGGACACCGTGTCCGGATCCACTTTAAAGTATGCA
ATGCGCTTGACTTTGTTGGGCTCGCTCTCGAACTCAATGAAGAGCGTGCA
GGCCCGCTCGCCGCATGGTTCCCGCTCCGACATCCGGATGATCTCGGCGG
CGATGCGCTGCGTGAGGTCGTTGGGCAGCGTGACCTCGGTACAGGCCAGG
TGGCGACGCTTGGCATCCCGTAGCTGAGCCTGCAGTTGCTGCGACAGTTC
CCGCACTGCGCTGGCGCTCACATCGTCCAAGTTGTCGGCGGCCCCAAACC
GAGCGCAGGCGGTCGACTGCAGCGGCGATGCGGGCAGTGGGTGGTGCTGC
TGGGCGGTGCTGGACAGCACGTTGGTCATGTAGGCGTGATGATAGGCGGC
TGCACTGCCACCGCTAAGGGGCGCCTCAAAACTGGCCGCGGCCACCGGCG
ACGTGGCCTGTTTGGGAGTGGTCATACCGACGGATCCTCCGCCCGCCAAC
GGACCACCGCCCCCTGCCGATGGAGGCGTGGCCGATGGGCGGGTGTTGAG
CGCCTGGTGCTGTCGCATGTGGAGCACAGAGGCTGGATGGCCATCTACCA
CGTCGACGTCCAGAATGCCCTCGCCGGCGGCTGTGTTCCCGTTCACGCCT
GCGGTCAGCTCCTCCTCCTCCTCCAGCGGCGCCGTAGAAGCTTGCCAGTC
TTTTATTTTATTAACACCGAATTTTTCCCTGATGTGATTTTGTACTGAGA
GCACTTCCATCTTCATGTCGACTGATAAC

BS06677.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7533-PC 900 chrb-RC 42..900 875..17 4270 99.8 Minus
CG7533-PC 900 chrb-RC 1..35 916..882 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-RC 5845 CG7533-RC 986..1885 916..17 4440 99.7 Minus
chrb-RE 4908 CG7533-RE 114..948 851..17 4175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11494088..11494733 851..206 3230 100 Minus
3L 28110227 3L 11494846..11494956 206..96 555 100 Minus
3L 28110227 3L 11495017..11495095 95..17 395 100 Minus
3L 28110227 3L 11488535..11488601 916..850 260 92.5 Minus
Blast to na_te.dros performed on 2015-01-30 16:55:39 has no hits.

BS06677.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:46 Download gff for BS06677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7533-PC 1..900 17..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:28 Download gff for BS06677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7533-PC 1..900 17..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 18:59:58 Download gff for BS06677.3prime
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 983..1885 17..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:13 Download gff for BS06677.3prime
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 983..1885 17..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:13 Download gff for BS06677.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11488532..11488601 850..921 91 -> Minus
3L 11494090..11494732 207..849 100 -> Minus
3L 11494846..11494956 96..206 100 -> Minus
3L 11495017..11495095 17..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 18:59:58 Download gff for BS06677.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11481632..11481701 850..921 91 -> Minus
arm_3L 11487190..11487832 207..849 100 -> Minus
arm_3L 11487946..11488056 96..206 100 -> Minus
arm_3L 11488117..11488195 17..95 100   Minus

BS06677.5prime Sequence

869 bp (827 high quality bases) assembled on 2005-12-04

> BS06677.5prime
GAAGTTATCAGTCGACATGAAGATGGAAGTGCTCTCAGTACAAAATCACA
TTCAGGGAAAATTCGGTGTTAATAAAATTAAAGACTGGCAAGCTTCTACG
GCGCCGCTGGAGGAGGAGGAGGAGCTGACCGCAGGCGTGAACGGGAACAC
AGCCGCCGGCGAGGGCATTCTGGACGTCGACGTGGTAGATGGCCATCCAG
CCTCTGTGCTCCACATGCGACAGCACCAGGCGCTCAACACCCGCCCATCG
GCCACGCCTCCATCGGCAGGGGGCGGTGGTCCGTTGGCGGGCGGAGGATC
CGTCGGTATGACCACTCCCAAACAGGCCACGTCGCCGGTGGCCGCGGCCA
GTTTTGAGGCGCCCCTTAGCGGTGGCAGTGCAGCCGCCTATCATCACGCC
TACATGACCAACGTGCTGTCCAGCACCGCCCAGCAGCACCACCCACTGCC
CGCATCGCCGCTGCAGTCGACCGCCTGCGCTCGGTTTGGGGCCGCCGACA
ACTTGGACGATGTGAGCGCCAGCGCAGTGCGGGAACTGTCGCAGCAACTG
CAGGCTCAGCTACGGGATGCCAAGCGTCGCCACCTGGCCTGTACCGAGGT
CACGCTGCCCAACGACCTCACGCAGCGCATCGCCGCCGAGATCATCCGGA
TGTCGGAGCGGGAACCATGCGGCGAGCGGGCCTGCACGCTCTTCATTGAG
TTCGAGAGCGAGCCCAACAAAGTCAAGCGCATTGCATACTTTAAAGTGGA
TCCGGACACGGTGTCCATCTTCGAGCTGTACTTGACATTGAGGCAGGACA
AGAGCGGCTGGAGCTCCTTGGTGCCGCAGTTTATAAAAAACTTTACTCGT
AGCAATACATCAACATCAG

BS06677.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7533-PC 900 chrb-RC 1..842 17..858 4185 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-RC 5845 CG7533-RC 986..1839 17..869 4230 99.8 Plus
chrb-RE 4908 CG7533-RE 114..902 82..869 3905 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11494088..11494733 82..727 3230 100 Plus
3L 28110227 3L 11494846..11494956 727..837 555 100 Plus
3L 28110227 3L 11488535..11488601 17..83 335 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:58:37 has no hits.

BS06677.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:48 Download gff for BS06677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7533-PC 1..854 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:30 Download gff for BS06677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7533-PC 1..854 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:30:04 Download gff for BS06677.5prime
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 983..1839 12..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:25 Download gff for BS06677.5prime
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 983..1839 12..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:25 Download gff for BS06677.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11488532..11488601 12..83 95 -> Plus
3L 11494090..11494732 84..726 100 -> Plus
3L 11494846..11494956 727..837 100 -> Plus
3L 11495017..11495049 838..869 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:30:04 Download gff for BS06677.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11481632..11481701 12..83 95 -> Plus
arm_3L 11487190..11487832 84..726 100 -> Plus
arm_3L 11487946..11488056 727..837 100 -> Plus
arm_3L 11488117..11488149 838..869 93   Plus

BS06677.complete Sequence

932 bp (932 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635587

> BS06677.complete
GAAGTTATCAGTCGACATGAAGATGGAAGTGCTCTCAGTACAAAATCACA
TTCAGGGAAAATTCGGTGTTAATAAAATTAAAGACTGGCAAGCTTCTACG
GCGCCGCTGGAGGAGGAGGAGGAGCTGACCGCAGGCGTGAACGGGAACAC
AGCCGCCGGCGAGGGCATTCTGGACGTCGACGTGGTAGATGGCCATCCAG
CCTCTGTGCTCCACATGCGACAGCACCAGGCGCTCAACACCCGCCCATCG
GCCACGCCTCCATCGGCAGGGGGCGGTGGTCCGTTGGCGGGCGGAGGATC
CGTCGGTATGACCACTCCCAAACAGGCCACGTCGCCGGTGGCCGCGGCCA
GTTTTGAGGCGCCCCTTAGCGGTGGCAGTGCAGCCGCCTATCATCACGCC
TACATGACCAACGTGCTGTCCAGCACCGCCCAGCAGCACCACCCACTGCC
CGCATCGCCGCTGCAGTCGACCGCCTGCGCTCGGTTTGGGGCCGCCGACA
ACTTGGACGATGTGAGCGCCAGCGCAGTGCGGGAACTGTCGCAGCAACTG
CAGGCTCAGCTACGGGATGCCAAGCGTCGCCACCTGGCCTGTACCGAGGT
CACGCTGCCCAACGACCTCACGCAGCGCATCGCCGCCGAGATCATCCGGA
TGTCGGAGCGGGAACCATGCGGCGAGCGGGCCTGCACGCTCTTCATTGAG
TTCGAGAGCGAGCCCAACAAAGTCAAGCGCATTGCATACTTTAAAGTGGA
TCCGGACACGGTGTCCATCTTCGAGCTGTACTTGACATTGAGGCAGGACA
AGAGCGGCTGGAGCTCCTTGGTGCCGCAGTTTATAAAAAACCTTACTCGT
AGCAATACCATCAACATCAGTCCCGACTTCACGCTGACCAAGAAAAAGCT
CTACTCATCCGAGTGAAAGCTTTCTAGACCAT

BS06677.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-RC 900 CG7533-PC 1..900 17..916 4500 100 Plus
chrb-RE 702 CG7533-PE 1..702 215..916 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-RC 5845 CG7533-RC 986..1885 17..916 4500 100 Plus
chrb-RE 4908 CG7533-RE 114..948 82..916 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11494088..11494733 82..727 3230 100 Plus
3L 28110227 3L 11494846..11494956 727..837 555 100 Plus
3L 28110227 3L 11495017..11495095 838..916 395 100 Plus
3L 28110227 3L 11488535..11488601 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:59:12 has no hits.

BS06677.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:00 Download gff for BS06677.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:51 Download gff for BS06677.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 973..1875 12..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:38 Download gff for BS06677.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 986..1884 17..915 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:01 Download gff for BS06677.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 973..1875 12..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:45 Download gff for BS06677.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 986..1884 17..915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:45 Download gff for BS06677.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11488535..11488601 17..83 100 -> Plus
3L 11494090..11494732 84..726 100 -> Plus
3L 11494846..11494956 727..837 100 -> Plus
3L 11495017..11495094 838..915 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:38 Download gff for BS06677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11481635..11481701 17..83 100 -> Plus
arm_3L 11487190..11487832 84..726 100 -> Plus
arm_3L 11487946..11488056 727..837 100 -> Plus
arm_3L 11488117..11488194 838..915 100   Plus

BS06677.pep Sequence

Translation from 16 to 915

> BS06677.pep
MKMEVLSVQNHIQGKFGVNKIKDWQASTAPLEEEEELTAGVNGNTAAGEG
ILDVDVVDGHPASVLHMRQHQALNTRPSATPPSAGGGGPLAGGGSVGMTT
PKQATSPVAAASFEAPLSGGSAAAYHHAYMTNVLSSTAQQHHPLPASPLQ
STACARFGAADNLDDVSASAVRELSQQLQAQLRDAKRRHLACTEVTLPND
LTQRIAAEIIRMSEREPCGERACTLFIEFESEPNKVKRIAYFKVDPDTVS
IFELYLTLRQDKSGWSSLVPQFIKNLTRSNTINISPDFTLTKKKLYSSE*

BS06677.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-PC 299 CG7533-PC 1..299 1..299 1533 100 Plus
chrb-PE 233 CG7533-PE 1..233 67..299 1193 100 Plus
scyl-PC 280 CG7590-PC 49..254 92..299 419 45.6 Plus
scyl-PA 280 CG7590-PA 49..254 92..299 419 45.6 Plus