Clone Sequence Records
BS06680.complete Sequence
1676 bp assembled on 2009-12-07
GenBank Submission: KX801303
> BS06680.complete
GAAGTTATCAGTCGACATGCCGCGCAGAAAGGCCCTGACTAATAACAACA
ATGCCGGCGAAGCGGAGCAGCAGCCACCGAAGGCGAAGCGCGCCAGAATC
GCTTTTCATCTGGAGCTGCCCAAGCGGAGGACCGTGCTCGGCAACGTGCT
AGTCTGCGGCAACGGCGATGTGGGCCAACTTGGTCTCGGCGAGGACATAC
TGGAGCGCAAGCGTCTCAGCCCTGTGGCGGGCATCCCGGATGCCGTGGAC
ATATCCGCCGGTGGCATGCACAACCTGGTGCTGACCAAGTCAGGGGACAT
TTACTCATTCGGTTGCAATGACGAAGGTGCTCTAGGCCGTGACACCAGCG
AGGATGGCAGCGAGTCAAAGCCGGATCTTATCGATTTGCCCGGCAAGGCT
CTGTGCATTTCGGCGGGAGACTCGCATTCCGCTTGTCTGCTGGAGGATGG
CCGTGTCTTCGCTTGGGGCTCGTTCCGGGACTCTCATGGCAACATGGGCC
TCACCATCGATGGTAACAAGCGTACGCCCATCGATCTGATGGAGGGCACT
GTCTGTTGTAGCATCGCGTCCGGCGCCGATCATTTGGTCATCCTGACCAC
TGCCGGAAAGGTCTTTACCGTGGGCTGCGCTGAGCAGGGACAACTCGGCC
GGCTGTCGGAGCGTTCCATCTCCGGAGAGGGTCGTCGTGGCAAACGCGAC
TTGCTGCGGCCCACCCAGCTCATCATCACGCGGGCCAAACCTTTTGAGGC
CATCTGGGCCACCAACTACTGCACATTCATGCGCGAGTCACAGACACAGG
TCATCTGGGCCACAGGGCTTAACAACTTCAAGCAGCTGGCCCACGAGACA
AAGGGCAAGGAGTTCGCACTGACGCCCATCAAGACGGAACTCAAAGATAT
CCGACATATTGCCGGCGGTCAGCACCATACTGTCATCCTGACAACGGACC
TTAAGTGTTCCGTAGTGGGTCGTCCGGAGTACGGTCGGCTTGGTCTGGGC
GATGTCAAGGATGTTGTGGAGAAGCCAACGATTGTAAAGAAGCTGACCGA
AAAGATTGTGTCCGTTGGATGTGGCGAAGTCTGTTCCTATGCCGTTACAA
TTGATGGCAAACTGTATTCCTGGGGCTCCGGTGTCAACAATCAACTAGGC
GTTGGCGACGGCGATGATGAGCTCGAACCGATCGTGGTTGTCAGCAAGAA
CACGCAGGGGAAGCACATGCTGCTCGCATCTGGCGGTGGTCAGCACGCAA
TCTTTTTGGTCAAAGCGGACAAACAGGACCAGAAGGAGAATGTTCCAGTG
AAGGTGTCTGGCAGCAGCAGCATCAGTAAAAAGGACAAGACCCCGCCGCA
GGATAATGTCGACAAGGAAGCCGAGAATGTAGATAAGCAGGAGCAGAAGG
AAAACTTGCCGGCGAAGGCGTCAACCAGCAGCAAAAAGAACAAGACGCCG
CCGCAGGATAATGCCGACAAGGAAGCCGAGAATGTAGATAAGCAGGAGCA
GAAGGAAAACTTGCCGGCGAAGGCGTCAACCAGCAGCAAAAAGATTAAGA
CGCCGCCGCAGGATGATGCCGCCGAGGAGGTCGAAGAGGAGTCTGCTCAG
GAACCGACTCCCAAGAAGGCCAAGAAGCCTGCTGCCAAGCGGGGCGGTAA
AAAGACATAAAAGCTTTCTAGACCAT
BS06680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 1644 | CG10480-PC | 1..1644 | 17..1660 | 8220 | 100 | Plus |
| Rcc1-RB | 1644 | CG10480-PB | 1..1644 | 17..1660 | 8220 | 100 | Plus |
| Rcc1-RA | 1644 | CG10480-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
| Rcc1-RC | 1644 | CG10480-PC | 1308..1457 | 1429..1578 | 615 | 94 | Plus |
| Rcc1-RC | 1644 | CG10480-PC | 1413..1562 | 1324..1473 | 615 | 94 | Plus |
| Rcc1-RB | 1644 | CG10480-PB | 1308..1457 | 1429..1578 | 615 | 94 | Plus |
| Rcc1-RB | 1644 | CG10480-PB | 1413..1562 | 1324..1473 | 615 | 94 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 2085 | CG10480-RC | 125..1768 | 17..1660 | 8220 | 100 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 184..1827 | 17..1660 | 8220 | 100 | Plus |
| Rcc1-RA | 2365 | CG10480-RA | 405..2048 | 17..1660 | 8220 | 100 | Plus |
| Rcc1-RC | 2085 | CG10480-RC | 1432..1581 | 1429..1578 | 615 | 94 | Plus |
| Rcc1-RC | 2085 | CG10480-RC | 1537..1686 | 1324..1473 | 615 | 94 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 1491..1640 | 1429..1578 | 615 | 94 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 1596..1745 | 1324..1473 | 615 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5930579..5931559 | 1660..680 | 4905 | 100 | Minus |
| 3L | 28110227 | 3L | 5931616..5932281 | 682..17 | 3330 | 100 | Minus |
| 3L | 28110227 | 3L | 5930661..5930810 | 1473..1324 | 615 | 94 | Minus |
| 3L | 28110227 | 3L | 5930766..5930915 | 1578..1429 | 615 | 94 | Minus |
| X | 23542271 | X | 10900114..10900159 | 1660..1615 | 200 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:09:13 has no hits.
BS06680.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:24 Download gff for
BS06680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-RC | 180..1821 | 17..1658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:09 Download gff for
BS06680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..2046 | 17..1658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:01 Download gff for
BS06680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-RC | 180..1821 | 17..1658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:58 Download gff for
BS06680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..2046 | 17..1658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:58 Download gff for
BS06680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5930581..5931558 | 681..1658 | 100 | <- | Minus |
| 3L | 5931618..5932281 | 17..680 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:09 Download gff for
BS06680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5923681..5924658 | 681..1658 | 100 | <- | Minus |
| arm_3L | 5924718..5925381 | 17..680 | 100 | | Minus |
BS06680.3prime Sequence
932 bp (810 high quality bases) assembled on 2005-12-04
> BS06680.3prime
ATGGTCTAGAAAGCTTTTATGTCTTTTTACCGCCCCGCTTGGCAGCAGGC
TTCTTGGCCTTCTTGGGAGTCGGTTCCTGAGCAGACTCCTCTTCGACCTC
CTCGGCGGCATCATCCTGCGGCGGCGTCTTAATCTTTTTGCTGCTGGTTG
ACGCCTTCGCCGGCAAGTTTTCCTTCTGCTCCTGCTTATCTACATTCTCG
GCTTCCTTGTCGGCATTATCCTGCGGCGGCGTCTTGTTCTTTTTGCTGCT
GGTTGACGCCTTCGCCGGCAAGTTTTCCTTCTGCTCCTGCTTATCTACAT
TCTCGGCTTCCTTGTCGACATTATCCTGCGGCGGGGTCTTGTCCTTTTTA
CTGATGCTGCTGCTGCCAGACACCTTCACTGGAACATTCTCCTTCTGGTC
CTGTTTGTCCGCTTTGACCAAAAAGATTGCGTGCTGACCACCGCCAGATG
CGAGCAGCATGTGCTTCCCCTGCGTGTTCTTGCTGACAACCACGATCGGT
TCGAGCTCATCATCGCCGTCGCCAACGCCTAGTTGATTGTTGACACCGGA
GCCCCAGGAATACAGTTTGCCATCAATTGTAACGGCATAGGAACAGACTT
CGCCACATCCAACGGACACAATCTTTTCGGTCAGCTTCTTTACAATCGTT
GGCTTCTCCACAACATCCTTGACATCGCCCAGACCAAGCCGACCGTACTC
CGGACGACCCACTACGGAACACTTAAGGTCCGTTGTCAGGATGACAGTAT
GGTGCTGACCGCCGGCAATATGTCGGATATCTTTGAGTTCCGTCTTGATG
GGCGTCAGTGCGAACTCCTTGCCCTTTGTCTCGTGGGCCAGCTGCTTGAA
GTTTGTAAGCCCTGTGGCCCAGATGACCTGTGTCTGTGACTCGCGCATGA
ATGTGCAGTAGTTGGTGGCCCAGATGGCCTCA
BS06680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10480-PA | 1644 | Bj1-RA | 729..1644 | 932..17 | 4530 | 99.7 | Minus |
| CG10480-PB | 1644 | Bj1-RB | 729..1644 | 932..17 | 4530 | 99.7 | Minus |
| CG10480-PC | 1644 | Bj1-RC | 729..1644 | 932..17 | 4530 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 2085 | CG10480-RC | 853..1768 | 932..17 | 4550 | 99.8 | Minus |
| Rcc1-RB | 2144 | CG10480-RB | 912..1827 | 932..17 | 4550 | 99.8 | Minus |
| Rcc1-RA | 2365 | CG10480-RA | 1133..2048 | 932..17 | 4550 | 99.8 | Minus |
| Rcc1-RC | 2085 | CG10480-RC | 1432..1581 | 248..99 | 615 | 94 | Minus |
| Rcc1-RC | 2085 | CG10480-RC | 1537..1686 | 353..204 | 615 | 94 | Minus |
| Rcc1-RB | 2144 | CG10480-RB | 1491..1640 | 248..99 | 615 | 94 | Minus |
| Rcc1-RB | 2144 | CG10480-RB | 1596..1745 | 353..204 | 615 | 94 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5930579..5931494 | 17..932 | 4550 | 99.8 | Plus |
| 3L | 28110227 | 3L | 5930661..5930810 | 204..353 | 615 | 94 | Plus |
| 3L | 28110227 | 3L | 5930766..5930915 | 99..248 | 615 | 94 | Plus |
| X | 23542271 | X | 10900114..10900159 | 17..62 | 200 | 95.7 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:59:58 has no hits.
BS06680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:49 Download gff for
BS06680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-PB | 730..1644 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:31 Download gff for
BS06680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10480-PC | 730..1644 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:55:57 Download gff for
BS06680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 1134..2052 | 11..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:46:09 Download gff for
BS06680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 1134..2052 | 11..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:46:09 Download gff for
BS06680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5930575..5931493 | 11..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:55:57 Download gff for
BS06680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5923675..5924593 | 11..931 | 99 | | Plus |
BS06680.5prime Sequence
893 bp (846 high quality bases) assembled on 2005-12-04
> BS06680.5prime
GAAGTTATCAGTCGACATGCCGCGCAGAAAGGCCCTGACTAATAACAACA
ATGCCGGCGAAGCGGAGCAGCAGCCACCGAAGGCGAAGCGCGCCAGAATC
GCTTTTCATCTGGAGCTGCCCAAGCGGAGGACCGTGCTCGGCAACGTGCT
AGTCTGCGGCAACGGCGATGTGGGCCAACTTGGTCTCGGCGAGGACATAC
TGGAGCGCAAGCGTCTCAGCCCTGTGGCGGGCATCCCGGATGCCGTGGAC
ATATCCGCCGGTGGCATGCACAACCTGGTGCTGACCAAGTCAGGGGACAT
TTACTCATTCGGTTGCAATGACGAAGGTGCTCTAGGCCGTGACACCAGCG
AGGATGGCAGCGAGTCAAAGCCGGATCTTATCGATTTGCCCGGCAAGGCT
CTGTGCATTTCGGCGGGAGACTCGCATTCCGCTTGTCTGCTGGAGGATGG
CCGTGTCTTCGCTTGGGGCTCGTTCCGGGACTCTCATGGCAACATGGGCC
TCACCATCGATGGTAACAAGCGTACGCCCATCGATCTGATGGAGGGCACT
GTCTGTTGTAGCATCGCGTCCGGCGCCGATCATTTGGTCATCCTGACCAC
TGCCGGAAAGGTCTTTACCGTGGGCTGCGCTGAGCAGGGACAACTCGGCC
GGCTGTCGGAGCGTTCCATCTCCGGAGAGGGTCGTCGTGGCAAACGCGAC
TTGCTGCGGCCCACCCAGCTCATCATCACGCGGGCCAAACCTTTTGAGGC
CATCTGGGCCACCAACTACTGCACATTCATGCGCGAGTCACAGACACAGG
TCATCTGGGCCACAGGGCTTAACAACTTCAAGCAGCTGGCCCACGAGACA
AGGGCAAGGGAGTCGCACTGACGCCCATCAAGACGGAAACTCA
BS06680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10480-PA | 1644 | Bj1-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
| CG10480-PB | 1644 | Bj1-RB | 1..835 | 17..851 | 4175 | 100 | Plus |
| CG10480-PC | 1644 | Bj1-RC | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 2085 | CG10480-RC | 125..997 | 17..888 | 4295 | 99.7 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 184..1056 | 17..888 | 4295 | 99.7 | Plus |
| Rcc1-RA | 2365 | CG10480-RA | 405..1277 | 17..888 | 4295 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5931616..5932281 | 682..17 | 3330 | 100 | Minus |
| 3L | 28110227 | 3L | 5931350..5931559 | 888..680 | 955 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:31:11 has no hits.
BS06680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:50 Download gff for
BS06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-PB | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:33 Download gff for
BS06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10480-PC | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:51:17 Download gff for
BS06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..1280 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:37:13 Download gff for
BS06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..1280 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:37:13 Download gff for
BS06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5931347..5931558 | 681..892 | 98 | <- | Minus |
| 3L | 5931618..5932281 | 17..680 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:51:17 Download gff for
BS06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5924447..5924658 | 681..892 | 98 | <- | Minus |
| arm_3L | 5924718..5925381 | 17..680 | 100 | | Minus |
BS06680.pep Sequence
Translation from 16 to 1659
> BS06680.pep
MPRRKALTNNNNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNG
DVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGC
NDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAW
GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVF
TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN
YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG
GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSV
GCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKH
MLLASGGGQHAIFLVKADKQDQKENVPVKVSGSSSISKKDKTPPQDNVDK
EAENVDKQEQKENLPAKASTSSKKNKTPPQDNADKEAENVDKQEQKENLP
AKASTSSKKIKTPPQDDAAEEVEEESAQEPTPKKAKKPAAKRGGKKT*
BS06680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-PC | 547 | CG10480-PC | 1..547 | 1..547 | 2838 | 100 | Plus |
| Rcc1-PB | 547 | CG10480-PB | 1..547 | 1..547 | 2838 | 100 | Plus |
| Rcc1-PA | 547 | CG10480-PA | 1..547 | 1..547 | 2838 | 100 | Plus |
| CG9153-PA | 1058 | CG9153-PA | 4..350 | 42..392 | 249 | 28.2 | Plus |
| CG9153-PB | 1058 | CG9153-PB | 4..350 | 42..392 | 249 | 28.2 | Plus |
| CG9153-PA | 1058 | CG9153-PA | 1..216 | 193..417 | 180 | 27.5 | Plus |
| CG9153-PA | 1058 | CG9153-PA | 7..265 | 147..414 | 169 | 25.6 | Plus |
