Clone BS06682 Report

Search the DGRC for BS06682

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptInx2-RA
Protein status:BS06682.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06682.3prime Sequence

763 bp (762 high quality bases) assembled on 2005-12-04

> BS06682.3prime
ATGGTCTAGAAAGCTTTTAGGCGTCGAAGGGCCGCTTGTGGGCGCTATGC
TCATCGCCGCTCATTTCGCGGGACAAGTCCGAGATCACCTCCTTGTAGAT
GAGCGGATCGATGTTCTTGCCCAGCTGATAGAGCAGGAACCAATCGCCGA
TGTTGCACTTGTTGGCCACCAGTTCGACCTCCTCGCTTTCAGCCAAACGG
GAACGGGCTCGGAGTAGGAGATGGCGGAGCTTGGGACCCGCCACAACAGC
GATTCTGTAGATAAGCGATATTCCCGACATGATGCTCAGGATGATGAACC
AGAACCACAGGAACACGTAGATCTTTTCGTTGACAATGTTCAGGGGCAGC
ACGCACAGACCGTCGTGGGTCTGCACACTGCCGGATGGACCGTATTTGTG
GAACGTGCATTTGGTGACCTTCGGAAAGACCCGCGCCATGGGATCAATGC
GCTCATCCGGCTCCAGCTCAGTGAACTTCAAGACATCACTGCCGTAGGTG
CTGAACTCGCCGTCGAGGAAGAAGTCCACAAAGTAGATCTGTCCAATCAC
ATTCACAAAGTTCAGGGCTTCGCACACGAAGAATCGGAAGGCGTAGAAAT
TGTGGCGGTTCAGGTTGCCAATGAAGTAGTCGACCAGGATCTTTTTGCGA
TCGTTCTTGCACTCATCGTTCACAATAGGGCTGTTGAGATCCATGACCAG
CATCTTGAGGCGTCCGCCTTCCCAGGACTTCCACAGATAGCGCGGTACGT
AGAACAGGATGGC

BS06682.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4590-PA 1104 inx2-RA 358..1104 763..17 3735 100 Minus
CG4590-PB 1104 inx2-RB 358..1104 763..17 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-RD 5266 CG4590-RD 601..1347 763..17 3735 100 Minus
Inx2-RC 1832 CG4590-RC 815..1561 763..17 3735 100 Minus
Inx2-RB 2758 CG4590-RB 601..1347 763..17 3735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6999486..7000232 763..17 3735 100 Minus
X 23542271 X 6974772..6974895 296..419 215 78.2 Plus
Blast to na_te.dros performed on 2015-02-12 04:21:41 has no hits.

BS06682.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:51 Download gff for BS06682.3prime
Subject Subject Range Query Range Percent Splice Strand
inx2-PA 358..1104 17..763 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:35 Download gff for BS06682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4590-PB 358..1104 17..763 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:03:59 Download gff for BS06682.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 601..1347 17..763 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:55 Download gff for BS06682.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 601..1347 17..763 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:55 Download gff for BS06682.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6999486..7000232 17..763 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:03:59 Download gff for BS06682.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6893519..6894265 17..763 100   Minus

BS06682.5prime Sequence

861 bp (802 high quality bases) assembled on 2005-12-04

> BS06682.5prime
GAAGTTATCAGTCGACATGTTTGATGTCTTTGGGTCCGTCAAGGGCCTGC
TGAAGATCGACCAGGTGTGCATCGACAACAATGTCTTTCGCATGCACTAC
AAGGCCACGGTGATCATACTGATCGCCTTCTCCCTCCTGGTGACCTCGCG
CCAATACATCGGTGACCCCATCGATTGTATTGTGGACGAGATCCCACTGG
GCGTGATGGACACCTACTGCTGGATCTACTCTACGTTTACCGTGCCAGAG
AGGCTAACGGGCATCACCGGACGCGATGTGGTGCAGCCCGGCGTGGGCTC
CCATGTGGAGGGCGAGGACGAGGTGAAGTACCACAAGTACTACCAGTGGG
TGTGCTTCGTCCTCTTCTTCCAGGCCATCCTGTTCTACGTACCGCGCTAT
CTGTGGAAGTCCTGGGAAGGCGGACGCCTCAAGATGCTGGTCATGGATCT
CAACAGCCCTATTGTGAACGATGAGTGCAAGAACGATCGCAAAAAGATCC
TGGTCGACTACTTCATTGGCAACCTGAACCGCCACAATTTCTACGCCTTC
CGATTCTTCGTGTGCGAAGCCCTGAACTTTGTGAATGTGATTGGACAGAT
CTACTTTGTGGACTTCTTCCTCGACGGCGAGTTCAGCACCTACGGCAGTG
ATGTCTTGAAGTTCACTGAGCTGGAGCCGGATGAGCGCATTGATCCCATG
GCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCC
ATCCGGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACA
TTGTCAACGAAAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCATCCTG
AGCATCATGTC

BS06682.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4590-PA 1104 inx2-RA 1..845 17..861 4225 100 Plus
CG4590-PB 1104 inx2-RB 1..845 17..861 4225 100 Plus
CG3039-PA 1089 ogre-RA 322..362 338..378 155 95.1 Plus
CG3039-PB 1089 ogre-RB 322..362 338..378 155 95.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-RD 5266 CG4590-RD 244..1088 17..861 4225 100 Plus
Inx2-RC 1832 CG4590-RC 458..1302 17..861 4225 100 Plus
Inx2-RB 2758 CG4590-RB 244..1088 17..861 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6999129..6999973 17..861 4225 100 Plus
X 23542271 X 6974772..6974895 841..718 215 78.2 Minus
Blast to na_te.dros performed on 2015-02-13 00:58:48 has no hits.

BS06682.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:52 Download gff for BS06682.5prime
Subject Subject Range Query Range Percent Splice Strand
inx2-PA 1..845 17..861 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:36 Download gff for BS06682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4590-PB 1..845 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:30:06 Download gff for BS06682.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 244..1088 17..861 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:26 Download gff for BS06682.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 244..1088 17..861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:26 Download gff for BS06682.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6999129..6999973 17..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:30:06 Download gff for BS06682.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6893162..6894006 17..861 100   Plus

BS06682.complete Sequence

1136 bp (1136 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ638796

> BS06682.complete
GAAGTTATCAGTCGACATGTTTGATGTCTTTGGGTCCGTCAAGGGCCTGC
TGAAGATCGACCAGGTGTGCATCGACAACAATGTCTTTCGCATGCACTAC
AAGGCCACGGTGATCATACTGATCGCCTTCTCCCTCCTGGTGACCTCGCG
CCAATACATCGGTGACCCCATCGATTGTATTGTGGACGAGATCCCACTGG
GCGTGATGGACACCTACTGCTGGATCTACTCTACGTTTACCGTGCCAGAG
AGGCTAACGGGCATCACCGGACGCGATGTGGTGCAGCCCGGCGTGGGCTC
CCATGTGGAGGGCGAGGACGAGGTGAAGTACCACAAGTACTACCAGTGGG
TGTGCTTCGTCCTCTTCTTCCAGGCCATCCTGTTCTACGTACCGCGCTAT
CTGTGGAAGTCCTGGGAAGGCGGACGCCTCAAGATGCTGGTCATGGATCT
CAACAGCCCTATTGTGAACGATGAGTGCAAGAACGATCGCAAAAAGATCC
TGGTCGACTACTTCATTGGCAACCTGAACCGCCACAATTTCTACGCCTTC
CGATTCTTCGTGTGCGAAGCCCTGAACTTTGTGAATGTGATTGGACAGAT
CTACTTTGTGGACTTCTTCCTCGACGGCGAGTTCAGCACCTACGGCAGTG
ATGTCTTGAAGTTCACTGAGCTGGAGCCGGATGAGCGCATTGATCCCATG
GCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCC
ATCCGGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACA
TTGTCAACGAAAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCATCCTG
AGCATCATGTCGGGAATATCGCTTATCTACAGAATCGCTGTTGTGGCGGG
TCCCAAGCTCCGCCATCTCCTACTCCGAGCCCGTTCCCGTTTGGCTGAAA
GCGAGGAGGTCGAACTGGTGGCCAACAAGTGCAACATCGGCGATTGGTTC
CTGCTCTATCAGCTGGGCAAGAACATCGATCCGCTCATCTACAAGGAGGT
GATCTCGGACTTGTCCCGCGAAATGAGCGGCGATGAGCATAGCGCCCACA
AGCGGCCCTTCGACGCCTAAAAGCTTTCTAGACCAT

BS06682.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-RD 1104 CG4590-PD 1..1104 17..1120 5520 100 Plus
Inx2-RC 1104 CG4590-PC 1..1104 17..1120 5520 100 Plus
Inx2-RB 1104 CG4590-PB 1..1104 17..1120 5520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-RD 5266 CG4590-RD 244..1347 17..1120 5520 100 Plus
Inx2-RC 1832 CG4590-RC 458..1561 17..1120 5520 100 Plus
Inx2-RB 2758 CG4590-RB 244..1347 17..1120 5520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6999129..7000232 17..1120 5520 100 Plus
X 23542271 X 6974772..6974895 841..718 215 78.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:02:17 has no hits.

BS06682.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:02 Download gff for BS06682.complete
Subject Subject Range Query Range Percent Splice Strand
inx2-RB 1..1104 17..1120 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:53 Download gff for BS06682.complete
Subject Subject Range Query Range Percent Splice Strand
inx2-RB 241..1344 17..1120 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:12 Download gff for BS06682.complete
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 250..1345 23..1118 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:02 Download gff for BS06682.complete
Subject Subject Range Query Range Percent Splice Strand
inx2-RB 241..1344 17..1120 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:15 Download gff for BS06682.complete
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 250..1345 23..1118 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:15 Download gff for BS06682.complete
Subject Subject Range Query Range Percent Splice Strand
X 6999135..7000230 23..1118 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:12 Download gff for BS06682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6893168..6894263 23..1118 100   Plus

BS06682.pep Sequence

Translation from 16 to 1119

> BS06682.pep
MFDVFGSVKGLLKIDQVCIDNNVFRMHYKATVIILIAFSLLVTSRQYIGD
PIDCIVDEIPLGVMDTYCWIYSTFTVPERLTGITGRDVVQPGVGSHVEGE
DEVKYHKYYQWVCFVLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIV
NDECKNDRKKILVDYFIGNLNRHNFYAFRFFVCEALNFVNVIGQIYFVDF
FLDGEFSTYGSDVLKFTELEPDERIDPMARVFPKVTKCTFHKYGPSGSVQ
THDGLCVLPLNIVNEKIYVFLWFWFIILSIMSGISLIYRIAVVAGPKLRH
LLLRARSRLAESEEVELVANKCNIGDWFLLYQLGKNIDPLIYKEVISDLS
REMSGDEHSAHKRPFDA*

BS06682.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-PD 367 CG4590-PD 1..367 1..367 1958 100 Plus
Inx2-PC 367 CG4590-PC 1..367 1..367 1958 100 Plus
Inx2-PB 367 CG4590-PB 1..367 1..367 1958 100 Plus
Inx2-PA 367 CG4590-PA 1..367 1..367 1958 100 Plus
shakB-PA 372 CG34358-PA 1..363 1..364 1039 48.5 Plus