Clone Sequence Records
BS06682.3prime Sequence
763 bp (762 high quality bases) assembled on 2005-12-04
> BS06682.3prime
ATGGTCTAGAAAGCTTTTAGGCGTCGAAGGGCCGCTTGTGGGCGCTATGC
TCATCGCCGCTCATTTCGCGGGACAAGTCCGAGATCACCTCCTTGTAGAT
GAGCGGATCGATGTTCTTGCCCAGCTGATAGAGCAGGAACCAATCGCCGA
TGTTGCACTTGTTGGCCACCAGTTCGACCTCCTCGCTTTCAGCCAAACGG
GAACGGGCTCGGAGTAGGAGATGGCGGAGCTTGGGACCCGCCACAACAGC
GATTCTGTAGATAAGCGATATTCCCGACATGATGCTCAGGATGATGAACC
AGAACCACAGGAACACGTAGATCTTTTCGTTGACAATGTTCAGGGGCAGC
ACGCACAGACCGTCGTGGGTCTGCACACTGCCGGATGGACCGTATTTGTG
GAACGTGCATTTGGTGACCTTCGGAAAGACCCGCGCCATGGGATCAATGC
GCTCATCCGGCTCCAGCTCAGTGAACTTCAAGACATCACTGCCGTAGGTG
CTGAACTCGCCGTCGAGGAAGAAGTCCACAAAGTAGATCTGTCCAATCAC
ATTCACAAAGTTCAGGGCTTCGCACACGAAGAATCGGAAGGCGTAGAAAT
TGTGGCGGTTCAGGTTGCCAATGAAGTAGTCGACCAGGATCTTTTTGCGA
TCGTTCTTGCACTCATCGTTCACAATAGGGCTGTTGAGATCCATGACCAG
CATCTTGAGGCGTCCGCCTTCCCAGGACTTCCACAGATAGCGCGGTACGT
AGAACAGGATGGC
BS06682.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4590-PA | 1104 | inx2-RA | 358..1104 | 763..17 | 3735 | 100 | Minus |
CG4590-PB | 1104 | inx2-RB | 358..1104 | 763..17 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-RD | 5266 | CG4590-RD | 601..1347 | 763..17 | 3735 | 100 | Minus |
Inx2-RC | 1832 | CG4590-RC | 815..1561 | 763..17 | 3735 | 100 | Minus |
Inx2-RB | 2758 | CG4590-RB | 601..1347 | 763..17 | 3735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6999486..7000232 | 763..17 | 3735 | 100 | Minus |
X | 23542271 | X | 6974772..6974895 | 296..419 | 215 | 78.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:21:41 has no hits.
BS06682.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:51 Download gff for
BS06682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-PA | 358..1104 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:35 Download gff for
BS06682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4590-PB | 358..1104 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:03:59 Download gff for
BS06682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 601..1347 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:55 Download gff for
BS06682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 601..1347 | 17..763 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:55 Download gff for
BS06682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6999486..7000232 | 17..763 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:03:59 Download gff for
BS06682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6893519..6894265 | 17..763 | 100 | | Minus |
BS06682.5prime Sequence
861 bp (802 high quality bases) assembled on 2005-12-04
> BS06682.5prime
GAAGTTATCAGTCGACATGTTTGATGTCTTTGGGTCCGTCAAGGGCCTGC
TGAAGATCGACCAGGTGTGCATCGACAACAATGTCTTTCGCATGCACTAC
AAGGCCACGGTGATCATACTGATCGCCTTCTCCCTCCTGGTGACCTCGCG
CCAATACATCGGTGACCCCATCGATTGTATTGTGGACGAGATCCCACTGG
GCGTGATGGACACCTACTGCTGGATCTACTCTACGTTTACCGTGCCAGAG
AGGCTAACGGGCATCACCGGACGCGATGTGGTGCAGCCCGGCGTGGGCTC
CCATGTGGAGGGCGAGGACGAGGTGAAGTACCACAAGTACTACCAGTGGG
TGTGCTTCGTCCTCTTCTTCCAGGCCATCCTGTTCTACGTACCGCGCTAT
CTGTGGAAGTCCTGGGAAGGCGGACGCCTCAAGATGCTGGTCATGGATCT
CAACAGCCCTATTGTGAACGATGAGTGCAAGAACGATCGCAAAAAGATCC
TGGTCGACTACTTCATTGGCAACCTGAACCGCCACAATTTCTACGCCTTC
CGATTCTTCGTGTGCGAAGCCCTGAACTTTGTGAATGTGATTGGACAGAT
CTACTTTGTGGACTTCTTCCTCGACGGCGAGTTCAGCACCTACGGCAGTG
ATGTCTTGAAGTTCACTGAGCTGGAGCCGGATGAGCGCATTGATCCCATG
GCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCC
ATCCGGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACA
TTGTCAACGAAAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCATCCTG
AGCATCATGTC
BS06682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4590-PA | 1104 | inx2-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
CG4590-PB | 1104 | inx2-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
CG3039-PA | 1089 | ogre-RA | 322..362 | 338..378 | 155 | 95.1 | Plus |
CG3039-PB | 1089 | ogre-RB | 322..362 | 338..378 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-RD | 5266 | CG4590-RD | 244..1088 | 17..861 | 4225 | 100 | Plus |
Inx2-RC | 1832 | CG4590-RC | 458..1302 | 17..861 | 4225 | 100 | Plus |
Inx2-RB | 2758 | CG4590-RB | 244..1088 | 17..861 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6999129..6999973 | 17..861 | 4225 | 100 | Plus |
X | 23542271 | X | 6974772..6974895 | 841..718 | 215 | 78.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:58:48 has no hits.
BS06682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:52 Download gff for
BS06682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-PA | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:36 Download gff for
BS06682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4590-PB | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:30:06 Download gff for
BS06682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 244..1088 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:26 Download gff for
BS06682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 244..1088 | 17..861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:26 Download gff for
BS06682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6999129..6999973 | 17..861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:30:06 Download gff for
BS06682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6893162..6894006 | 17..861 | 100 | | Plus |
BS06682.complete Sequence
1136 bp (1136 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638796
> BS06682.complete
GAAGTTATCAGTCGACATGTTTGATGTCTTTGGGTCCGTCAAGGGCCTGC
TGAAGATCGACCAGGTGTGCATCGACAACAATGTCTTTCGCATGCACTAC
AAGGCCACGGTGATCATACTGATCGCCTTCTCCCTCCTGGTGACCTCGCG
CCAATACATCGGTGACCCCATCGATTGTATTGTGGACGAGATCCCACTGG
GCGTGATGGACACCTACTGCTGGATCTACTCTACGTTTACCGTGCCAGAG
AGGCTAACGGGCATCACCGGACGCGATGTGGTGCAGCCCGGCGTGGGCTC
CCATGTGGAGGGCGAGGACGAGGTGAAGTACCACAAGTACTACCAGTGGG
TGTGCTTCGTCCTCTTCTTCCAGGCCATCCTGTTCTACGTACCGCGCTAT
CTGTGGAAGTCCTGGGAAGGCGGACGCCTCAAGATGCTGGTCATGGATCT
CAACAGCCCTATTGTGAACGATGAGTGCAAGAACGATCGCAAAAAGATCC
TGGTCGACTACTTCATTGGCAACCTGAACCGCCACAATTTCTACGCCTTC
CGATTCTTCGTGTGCGAAGCCCTGAACTTTGTGAATGTGATTGGACAGAT
CTACTTTGTGGACTTCTTCCTCGACGGCGAGTTCAGCACCTACGGCAGTG
ATGTCTTGAAGTTCACTGAGCTGGAGCCGGATGAGCGCATTGATCCCATG
GCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCC
ATCCGGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACA
TTGTCAACGAAAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCATCCTG
AGCATCATGTCGGGAATATCGCTTATCTACAGAATCGCTGTTGTGGCGGG
TCCCAAGCTCCGCCATCTCCTACTCCGAGCCCGTTCCCGTTTGGCTGAAA
GCGAGGAGGTCGAACTGGTGGCCAACAAGTGCAACATCGGCGATTGGTTC
CTGCTCTATCAGCTGGGCAAGAACATCGATCCGCTCATCTACAAGGAGGT
GATCTCGGACTTGTCCCGCGAAATGAGCGGCGATGAGCATAGCGCCCACA
AGCGGCCCTTCGACGCCTAAAAGCTTTCTAGACCAT
BS06682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-RD | 1104 | CG4590-PD | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Inx2-RC | 1104 | CG4590-PC | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Inx2-RB | 1104 | CG4590-PB | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-RD | 5266 | CG4590-RD | 244..1347 | 17..1120 | 5520 | 100 | Plus |
Inx2-RC | 1832 | CG4590-RC | 458..1561 | 17..1120 | 5520 | 100 | Plus |
Inx2-RB | 2758 | CG4590-RB | 244..1347 | 17..1120 | 5520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6999129..7000232 | 17..1120 | 5520 | 100 | Plus |
X | 23542271 | X | 6974772..6974895 | 841..718 | 215 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:17 has no hits.
BS06682.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:02 Download gff for
BS06682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-RB | 1..1104 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:53 Download gff for
BS06682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-RB | 241..1344 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:12 Download gff for
BS06682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 250..1345 | 23..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:02 Download gff for
BS06682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-RB | 241..1344 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:15 Download gff for
BS06682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 250..1345 | 23..1118 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:15 Download gff for
BS06682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6999135..7000230 | 23..1118 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:12 Download gff for
BS06682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6893168..6894263 | 23..1118 | 100 | | Plus |
BS06682.pep Sequence
Translation from 16 to 1119
> BS06682.pep
MFDVFGSVKGLLKIDQVCIDNNVFRMHYKATVIILIAFSLLVTSRQYIGD
PIDCIVDEIPLGVMDTYCWIYSTFTVPERLTGITGRDVVQPGVGSHVEGE
DEVKYHKYYQWVCFVLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIV
NDECKNDRKKILVDYFIGNLNRHNFYAFRFFVCEALNFVNVIGQIYFVDF
FLDGEFSTYGSDVLKFTELEPDERIDPMARVFPKVTKCTFHKYGPSGSVQ
THDGLCVLPLNIVNEKIYVFLWFWFIILSIMSGISLIYRIAVVAGPKLRH
LLLRARSRLAESEEVELVANKCNIGDWFLLYQLGKNIDPLIYKEVISDLS
REMSGDEHSAHKRPFDA*
BS06682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-PD | 367 | CG4590-PD | 1..367 | 1..367 | 1958 | 100 | Plus |
Inx2-PC | 367 | CG4590-PC | 1..367 | 1..367 | 1958 | 100 | Plus |
Inx2-PB | 367 | CG4590-PB | 1..367 | 1..367 | 1958 | 100 | Plus |
Inx2-PA | 367 | CG4590-PA | 1..367 | 1..367 | 1958 | 100 | Plus |
shakB-PA | 372 | CG34358-PA | 1..363 | 1..364 | 1039 | 48.5 | Plus |