Clone BS06685 Report

Search the DGRC for BS06685

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptBx42-RA
Protein status:BS06685.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06685.3prime Sequence

942 bp (798 high quality bases) assembled on 2005-12-04

> BS06685.3prime
ATGGTCTAGAAAGCTTCTAATCGCGCTTGCTGCGCTTGCGATCCGAATGG
CTGCTGCGCTCGTTGTTCTTCTCCTCGGCACGCTTGGGCGCCTTTTTGGC
CATGTTCAAGAACTGATCGAGACCGAAGGGATCCTCCTCCTTCTCGAACT
CAACGGGTCCACTCCTCTGGCCAGCGGCCGCCTCCTTGGAGGCACCGGAG
AACTGCTTGTCTGGCACGAAACGCTTGGTATTTACAATGGCATCCAGATC
ACCGCCGTAGTTATCGCTATCCGCCTGCTTGCTGGGTCGGTAGATGTGAG
CGCCCAGTGTATTGGAATCGCGCCACGGCTTGTCGTACACATTGTACGCT
TCGTCATCACCGTAACCGGAGTCCATGCCCTTGGTGGTGTTGAATAGACG
CTGATCGAAGAGCGTTTCACCGTTGCCGGCACTCTTGGCGGGCAGACCCA
AAGCGATTTGCTCAGAAATGTCACGCTCCCTCTCCTTCTGCAGTTTCGAT
CGCTTTTCGGGAGCCGCCCGCTGCAGGTTTCTATCCCGCTGGCGCTCCCT
TTGCCGCTCTGCCCGCAAGTCGTTGCGTTCACGCACCTCGGATCCTGTAG
CTCCGGAACCAGATGGCTCGGCTGCCTCCGGATTGCGTAGTCCCGCTCGC
TCTTCGCGAGCCCGCTGCGCCATCATACGCAGCATATCCTCCTTCTTCTC
CTTCTCCTTTTGGGCCAGCTTCTTTTCCAGCTGGGAGCGTGCCTCCACCG
CCTCGCGCGCCTTGCGATCGGCTATGTACAGCGCCTCGGCCATCTTGGCG
AACTTCTCGTTGATGTGCACCTGCTGCAGACCGCGTCCATCGGCTGCCAG
ACGCTTGTCCAGTGGAATGGTGTAACCTTTGGCGTTCTTCCAGTTCGATA
TGCAGGGCGGGATCTTCCACTCCTTTTGCTCCTTGACCGTCA

BS06685.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8264-PA 1644 Bx42-RA 719..1644 942..17 4630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Bx42-RB 2403 CG8264-RB 876..1802 942..16 4635 100 Minus
Bx42-RA 1955 CG8264-RA 876..1802 942..16 4635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9104471..9105333 16..878 4315 100 Plus
X 23542271 X 9105395..9105462 875..942 340 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:31:26 has no hits.

BS06685.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:55 Download gff for BS06685.3prime
Subject Subject Range Query Range Percent Splice Strand
Bx42-PA 720..1644 17..941 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:40 Download gff for BS06685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8264-PA 720..1644 17..941 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:25 Download gff for BS06685.3prime
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 877..1802 16..941 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:33 Download gff for BS06685.3prime
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 877..1802 16..941 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:33 Download gff for BS06685.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9104471..9105331 16..876 100 <- Plus
X 9105397..9105461 877..941 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:25 Download gff for BS06685.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8998504..8999364 16..876 100 <- Plus
arm_X 8999430..8999494 877..941 100   Plus

BS06685.5prime Sequence

871 bp (804 high quality bases) assembled on 2005-12-04

> BS06685.5prime
GAAGTTATCAGTCGACATGTCGCTATCAAGCCTGCTGCCCACGCCGACGA
ACGCGATCTGGGATCGGGAGGACGAGCGTCGCCTGGTCGCCCGCGGAGCA
CCAAAGATCGGAGCCCTGGTCTCCGCCAAAATCGCTGCTCCGCCGTACGG
ACAGCGTAAGGATTGGGTACCACATACGGATGCGGACTTTGGCGATGGCG
GCGCCTTCCCGGAGATCCATGTGGCGCAATATCCACTAGGTCTGGGAGCA
CCAGGAAATGTTGGCAAGAAGTCGGATGCTCTGGCCGTTCGCCTGGACGA
CAAGGGAAAGGTTAAATACGATGCCATAGCACGCCAAGGACATGGCAAGG
ACAAGATTGTGTACTCGTCCATTTCGCAACTGCTGCCGGCGGAGGTGTTG
GCCGAAGATGCGGATGAACTACAGCGCCCGGACGAGGAAACGGTGATGGA
GACGACGGAGGAGACGCGCCTGGCGCTGGAGAAGCTGACCAACCAGAAGA
TCACCTCAGCGCTGCCCGTGCGCCATGCCCAGAAGGCGGGTCCCGCCCAG
TACATTCGGTACACGCCCTCGCAGCAGGGCGATACCTTCAATTCGGGCGC
CAAGCAGCGTGTCATCCGGATGGTGGAGGCGCAGCTCGATCCGATGGAGC
CGCCCAAGTTCCGCATTAACAAAAAGATTCCACGAGGTCCACCATCGCCG
CCGGCACCTGTCCTCCACTCACCATCGCGCAAGGTGACGGTCAAGGAGCA
AAAGGAGTGGAAGATCCCGCCCTGCATATCGAACTGGAAGAACGCCAAAG
GTTACACCATTCCACTGGACAAGCGTCTGGCAGCCGATGGACGCGGTCTG
CAGCAGGTGCACATCAACGAG

BS06685.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8264-PA 1644 Bx42-RA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Bx42-RB 2403 CG8264-RB 158..1012 17..871 4275 100 Plus
Bx42-RA 1955 CG8264-RA 158..1012 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9105395..9105959 802..238 2825 100 Minus
X 23542271 X 9106223..9106447 241..17 1125 100 Minus
X 23542271 X 9105261..9105333 871..799 365 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:22:17 has no hits.

BS06685.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:56 Download gff for BS06685.5prime
Subject Subject Range Query Range Percent Splice Strand
Bx42-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:42 Download gff for BS06685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8264-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:37 Download gff for BS06685.5prime
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 154..1012 10..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:29 Download gff for BS06685.5prime
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 154..1012 10..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:29 Download gff for BS06685.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9105261..9105331 801..871 100 <- Minus
X 9105397..9105957 240..800 100 <- Minus
X 9106225..9106451 10..239 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:37 Download gff for BS06685.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8999294..8999364 801..871 100 <- Minus
arm_X 8999430..8999990 240..800 100 <- Minus
arm_X 9000258..9000484 10..239 98   Minus

BS06685.complete Sequence

1676 bp assembled on 2007-10-17

GenBank Submission: FJ635588

> BS06685.complete
GAAGTTATCAGTCGACATGTCGCTATCAAGCCTGCTGCCCACGCCGACGA
ACGCGATCTGGGATCGGGAGGACGAGCGTCGCCTGGTCGCCCGCGGAGCA
CCAAAGATCGGAGCCCTGGTCTCCGCCAAAATCGCTGCTCCGCCGTACGG
ACAGCGTAAGGATTGGGTACCACATACGGATGCGGACTTTGGCGATGGCG
GCGCCTTCCCGGAGATCCATGTGGCGCAATATCCACTAGGTCTGGGAGCA
CCAGGAAATGTTGGCAAGAAGTCGGATGCTCTGGCCGTTCGCCTGGACGA
CAAGGGAAAGGTTAAATACGATGCCATAGCACGCCAAGGACATGGCAAGG
ACAAGATTGTGTACTCGTCCATTTCGCAACTGCTGCCGGCGGAGGTGTTG
GCCGAAGATGCGGATGAACTACAGCGCCCGGACGAGGAAACGGTGATGGA
GACGACGGAGGAGACGCGCCTGGCGCTGGAGAAGCTGACCAACCAGAAGA
TCACCTCAGCGCTGCCCGTGCGCCATGCCCAGAAGGCGGGTCCCGCCCAG
TACATTCGGTACACGCCCTCGCAGCAGGGCGATACCTTCAATTCGGGCGC
CAAGCAGCGTGTCATCCGGATGGTGGAGGCGCAGCTCGATCCGATGGAGC
CGCCCAAGTTCCGCATTAACAAAAAGATTCCACGAGGTCCACCATCGCCG
CCGGCACCTGTCCTCCACTCACCATCGCGCAAGGTGACGGTCAAGGAGCA
AAAGGAGTGGAAGATCCCGCCCTGCATATCGAACTGGAAGAACGCCAAAG
GTTACACCATTCCACTGGACAAGCGTCTGGCAGCCGATGGACGCGGTCTG
CAGCAGGTGCACATCAACGAGAAGTTCGCCAAGATGGCCGAGGCGCTGTA
CATAGCCGATCGCAAGGCGCGCGAGGCGGTGGAGGCACGCTCCCAGCTGG
AAAAGAAGCTGGCCCAAAAGGAGAAGGAGAAGAAGGAGGATATGCTGCGT
ATGATGGCGCAGCGGGCTCGCGAAGAGCGAGCGGGACTACGCAATCCGGA
GGCAGCCGAGCCATCTGGTTCCGGAGCTACAGGATCCGAGGTGCGTGAAC
GCAACGACTTGCGGGCAGAGCGGCAAAGGGAGCGCCAGCGGGATAGAAAC
CTGCAGCGGGCGGCTCCCGAAAAGCGATCGAAACTGCAGAAGGAGAGGGA
GCGTGACATTTCTGAGCAAATCGCTTTGGGTCTGCCCGCCAAGAGTGCCG
GCAACGGTGAAACGCTCTTCGATCAGCGTCTATTCAACACCACCAAGGGC
ATGGACTCCGGTTACGGTGATGACGAAGCGTACAATGTGTACGACAAGCC
GTGGCGCGATTCCAATACACTGGGCGCTCACATCTACCGACCCAGCAAGC
AGGCGGATAGCGATAACTACGGCGGTGATCTGGATGCCATTGTAAATACC
AAGCGTTTCGTGCCAGACAAGCAGTTCTCCGGTGCCTCCAAGGAGGCGGC
CGCTGGCCAGAGGAGTGGACCCGTTGAGTTCGAGAAGGAGGAGGATCCCT
TCGGTCTCGATCAGTTCTTGAACATGGCCAAAAAGGCGCCCAAGCGTGCC
GAGGAGAAGAACAACGAGCGCAGCAGCCATTCGGATCGCAAGCGCAGCAA
GCGCGATTAGAAGCTTTCTAGACCAT

BS06685.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Bx42-RB 1644 CG8264-PB 1..1644 17..1660 8220 100 Plus
Bx42-RA 1644 CG8264-PA 1..1644 17..1660 8220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Bx42-RB 2403 CG8264-RB 158..1802 17..1661 8225 100 Plus
Bx42-RA 1955 CG8264-RA 158..1802 17..1661 8225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9104471..9105333 1661..799 4315 100 Minus
X 23542271 X 9105395..9105959 802..238 2825 100 Minus
X 23542271 X 9106223..9106447 241..17 1125 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:41:36 has no hits.

BS06685.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:06 Download gff for BS06685.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 1..1644 17..1660 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:18 Download gff for BS06685.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 152..1800 10..1661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:04 Download gff for BS06685.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 158..1801 17..1660 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:59 Download gff for BS06685.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 156..1799 17..1660 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:23 Download gff for BS06685.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 158..1801 17..1660 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:23 Download gff for BS06685.complete
Subject Subject Range Query Range Percent Splice Strand
X 9104472..9105331 801..1660 100 <- Minus
X 9105397..9105957 240..800 100 <- Minus
X 9106225..9106447 17..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:04 Download gff for BS06685.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9000258..9000480 17..239 100   Minus
arm_X 8998505..8999364 801..1660 100 <- Minus
arm_X 8999430..8999990 240..800 100 <- Minus

BS06685.pep Sequence

Translation from 16 to 1659

> BS06685.pep
MSLSSLLPTPTNAIWDREDERRLVARGAPKIGALVSAKIAAPPYGQRKDW
VPHTDADFGDGGAFPEIHVAQYPLGLGAPGNVGKKSDALAVRLDDKGKVK
YDAIARQGHGKDKIVYSSISQLLPAEVLAEDADELQRPDEETVMETTEET
RLALEKLTNQKITSALPVRHAQKAGPAQYIRYTPSQQGDTFNSGAKQRVI
RMVEAQLDPMEPPKFRINKKIPRGPPSPPAPVLHSPSRKVTVKEQKEWKI
PPCISNWKNAKGYTIPLDKRLAADGRGLQQVHINEKFAKMAEALYIADRK
AREAVEARSQLEKKLAQKEKEKKEDMLRMMAQRAREERAGLRNPEAAEPS
GSGATGSEVRERNDLRAERQRERQRDRNLQRAAPEKRSKLQKERERDISE
QIALGLPAKSAGNGETLFDQRLFNTTKGMDSGYGDDEAYNVYDKPWRDSN
TLGAHIYRPSKQADSDNYGGDLDAIVNTKRFVPDKQFSGASKEAAAGQRS
GPVEFEKEEDPFGLDQFLNMAKKAPKRAEEKNNERSSHSDRKRSKRD*

BS06685.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Bx42-PB 547 CG8264-PB 1..547 1..547 2825 100 Plus
Bx42-PA 547 CG8264-PA 1..547 1..547 2825 100 Plus