Clone Sequence Records
BS06685.3prime Sequence
942 bp (798 high quality bases) assembled on 2005-12-04
> BS06685.3prime
ATGGTCTAGAAAGCTTCTAATCGCGCTTGCTGCGCTTGCGATCCGAATGG
CTGCTGCGCTCGTTGTTCTTCTCCTCGGCACGCTTGGGCGCCTTTTTGGC
CATGTTCAAGAACTGATCGAGACCGAAGGGATCCTCCTCCTTCTCGAACT
CAACGGGTCCACTCCTCTGGCCAGCGGCCGCCTCCTTGGAGGCACCGGAG
AACTGCTTGTCTGGCACGAAACGCTTGGTATTTACAATGGCATCCAGATC
ACCGCCGTAGTTATCGCTATCCGCCTGCTTGCTGGGTCGGTAGATGTGAG
CGCCCAGTGTATTGGAATCGCGCCACGGCTTGTCGTACACATTGTACGCT
TCGTCATCACCGTAACCGGAGTCCATGCCCTTGGTGGTGTTGAATAGACG
CTGATCGAAGAGCGTTTCACCGTTGCCGGCACTCTTGGCGGGCAGACCCA
AAGCGATTTGCTCAGAAATGTCACGCTCCCTCTCCTTCTGCAGTTTCGAT
CGCTTTTCGGGAGCCGCCCGCTGCAGGTTTCTATCCCGCTGGCGCTCCCT
TTGCCGCTCTGCCCGCAAGTCGTTGCGTTCACGCACCTCGGATCCTGTAG
CTCCGGAACCAGATGGCTCGGCTGCCTCCGGATTGCGTAGTCCCGCTCGC
TCTTCGCGAGCCCGCTGCGCCATCATACGCAGCATATCCTCCTTCTTCTC
CTTCTCCTTTTGGGCCAGCTTCTTTTCCAGCTGGGAGCGTGCCTCCACCG
CCTCGCGCGCCTTGCGATCGGCTATGTACAGCGCCTCGGCCATCTTGGCG
AACTTCTCGTTGATGTGCACCTGCTGCAGACCGCGTCCATCGGCTGCCAG
ACGCTTGTCCAGTGGAATGGTGTAACCTTTGGCGTTCTTCCAGTTCGATA
TGCAGGGCGGGATCTTCCACTCCTTTTGCTCCTTGACCGTCA
BS06685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8264-PA | 1644 | Bx42-RA | 719..1644 | 942..17 | 4630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-RB | 2403 | CG8264-RB | 876..1802 | 942..16 | 4635 | 100 | Minus |
Bx42-RA | 1955 | CG8264-RA | 876..1802 | 942..16 | 4635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9104471..9105333 | 16..878 | 4315 | 100 | Plus |
X | 23542271 | X | 9105395..9105462 | 875..942 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:31:26 has no hits.
BS06685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:55 Download gff for
BS06685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-PA | 720..1644 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:40 Download gff for
BS06685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8264-PA | 720..1644 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:25 Download gff for
BS06685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 877..1802 | 16..941 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:33 Download gff for
BS06685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 877..1802 | 16..941 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:33 Download gff for
BS06685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9104471..9105331 | 16..876 | 100 | <- | Plus |
X | 9105397..9105461 | 877..941 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:25 Download gff for
BS06685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8998504..8999364 | 16..876 | 100 | <- | Plus |
arm_X | 8999430..8999494 | 877..941 | 100 | | Plus |
BS06685.5prime Sequence
871 bp (804 high quality bases) assembled on 2005-12-04
> BS06685.5prime
GAAGTTATCAGTCGACATGTCGCTATCAAGCCTGCTGCCCACGCCGACGA
ACGCGATCTGGGATCGGGAGGACGAGCGTCGCCTGGTCGCCCGCGGAGCA
CCAAAGATCGGAGCCCTGGTCTCCGCCAAAATCGCTGCTCCGCCGTACGG
ACAGCGTAAGGATTGGGTACCACATACGGATGCGGACTTTGGCGATGGCG
GCGCCTTCCCGGAGATCCATGTGGCGCAATATCCACTAGGTCTGGGAGCA
CCAGGAAATGTTGGCAAGAAGTCGGATGCTCTGGCCGTTCGCCTGGACGA
CAAGGGAAAGGTTAAATACGATGCCATAGCACGCCAAGGACATGGCAAGG
ACAAGATTGTGTACTCGTCCATTTCGCAACTGCTGCCGGCGGAGGTGTTG
GCCGAAGATGCGGATGAACTACAGCGCCCGGACGAGGAAACGGTGATGGA
GACGACGGAGGAGACGCGCCTGGCGCTGGAGAAGCTGACCAACCAGAAGA
TCACCTCAGCGCTGCCCGTGCGCCATGCCCAGAAGGCGGGTCCCGCCCAG
TACATTCGGTACACGCCCTCGCAGCAGGGCGATACCTTCAATTCGGGCGC
CAAGCAGCGTGTCATCCGGATGGTGGAGGCGCAGCTCGATCCGATGGAGC
CGCCCAAGTTCCGCATTAACAAAAAGATTCCACGAGGTCCACCATCGCCG
CCGGCACCTGTCCTCCACTCACCATCGCGCAAGGTGACGGTCAAGGAGCA
AAAGGAGTGGAAGATCCCGCCCTGCATATCGAACTGGAAGAACGCCAAAG
GTTACACCATTCCACTGGACAAGCGTCTGGCAGCCGATGGACGCGGTCTG
CAGCAGGTGCACATCAACGAG
BS06685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8264-PA | 1644 | Bx42-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-RB | 2403 | CG8264-RB | 158..1012 | 17..871 | 4275 | 100 | Plus |
Bx42-RA | 1955 | CG8264-RA | 158..1012 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9105395..9105959 | 802..238 | 2825 | 100 | Minus |
X | 23542271 | X | 9106223..9106447 | 241..17 | 1125 | 100 | Minus |
X | 23542271 | X | 9105261..9105333 | 871..799 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:22:17 has no hits.
BS06685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:48:56 Download gff for
BS06685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:42 Download gff for
BS06685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8264-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:38:37 Download gff for
BS06685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 154..1012 | 10..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:29 Download gff for
BS06685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 154..1012 | 10..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:29 Download gff for
BS06685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9105261..9105331 | 801..871 | 100 | <- | Minus |
X | 9105397..9105957 | 240..800 | 100 | <- | Minus |
X | 9106225..9106451 | 10..239 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:38:37 Download gff for
BS06685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8999294..8999364 | 801..871 | 100 | <- | Minus |
arm_X | 8999430..8999990 | 240..800 | 100 | <- | Minus |
arm_X | 9000258..9000484 | 10..239 | 98 | | Minus |
BS06685.complete Sequence
1676 bp assembled on 2007-10-17
GenBank Submission: FJ635588
> BS06685.complete
GAAGTTATCAGTCGACATGTCGCTATCAAGCCTGCTGCCCACGCCGACGA
ACGCGATCTGGGATCGGGAGGACGAGCGTCGCCTGGTCGCCCGCGGAGCA
CCAAAGATCGGAGCCCTGGTCTCCGCCAAAATCGCTGCTCCGCCGTACGG
ACAGCGTAAGGATTGGGTACCACATACGGATGCGGACTTTGGCGATGGCG
GCGCCTTCCCGGAGATCCATGTGGCGCAATATCCACTAGGTCTGGGAGCA
CCAGGAAATGTTGGCAAGAAGTCGGATGCTCTGGCCGTTCGCCTGGACGA
CAAGGGAAAGGTTAAATACGATGCCATAGCACGCCAAGGACATGGCAAGG
ACAAGATTGTGTACTCGTCCATTTCGCAACTGCTGCCGGCGGAGGTGTTG
GCCGAAGATGCGGATGAACTACAGCGCCCGGACGAGGAAACGGTGATGGA
GACGACGGAGGAGACGCGCCTGGCGCTGGAGAAGCTGACCAACCAGAAGA
TCACCTCAGCGCTGCCCGTGCGCCATGCCCAGAAGGCGGGTCCCGCCCAG
TACATTCGGTACACGCCCTCGCAGCAGGGCGATACCTTCAATTCGGGCGC
CAAGCAGCGTGTCATCCGGATGGTGGAGGCGCAGCTCGATCCGATGGAGC
CGCCCAAGTTCCGCATTAACAAAAAGATTCCACGAGGTCCACCATCGCCG
CCGGCACCTGTCCTCCACTCACCATCGCGCAAGGTGACGGTCAAGGAGCA
AAAGGAGTGGAAGATCCCGCCCTGCATATCGAACTGGAAGAACGCCAAAG
GTTACACCATTCCACTGGACAAGCGTCTGGCAGCCGATGGACGCGGTCTG
CAGCAGGTGCACATCAACGAGAAGTTCGCCAAGATGGCCGAGGCGCTGTA
CATAGCCGATCGCAAGGCGCGCGAGGCGGTGGAGGCACGCTCCCAGCTGG
AAAAGAAGCTGGCCCAAAAGGAGAAGGAGAAGAAGGAGGATATGCTGCGT
ATGATGGCGCAGCGGGCTCGCGAAGAGCGAGCGGGACTACGCAATCCGGA
GGCAGCCGAGCCATCTGGTTCCGGAGCTACAGGATCCGAGGTGCGTGAAC
GCAACGACTTGCGGGCAGAGCGGCAAAGGGAGCGCCAGCGGGATAGAAAC
CTGCAGCGGGCGGCTCCCGAAAAGCGATCGAAACTGCAGAAGGAGAGGGA
GCGTGACATTTCTGAGCAAATCGCTTTGGGTCTGCCCGCCAAGAGTGCCG
GCAACGGTGAAACGCTCTTCGATCAGCGTCTATTCAACACCACCAAGGGC
ATGGACTCCGGTTACGGTGATGACGAAGCGTACAATGTGTACGACAAGCC
GTGGCGCGATTCCAATACACTGGGCGCTCACATCTACCGACCCAGCAAGC
AGGCGGATAGCGATAACTACGGCGGTGATCTGGATGCCATTGTAAATACC
AAGCGTTTCGTGCCAGACAAGCAGTTCTCCGGTGCCTCCAAGGAGGCGGC
CGCTGGCCAGAGGAGTGGACCCGTTGAGTTCGAGAAGGAGGAGGATCCCT
TCGGTCTCGATCAGTTCTTGAACATGGCCAAAAAGGCGCCCAAGCGTGCC
GAGGAGAAGAACAACGAGCGCAGCAGCCATTCGGATCGCAAGCGCAGCAA
GCGCGATTAGAAGCTTTCTAGACCAT
BS06685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-RB | 1644 | CG8264-PB | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Bx42-RA | 1644 | CG8264-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-RB | 2403 | CG8264-RB | 158..1802 | 17..1661 | 8225 | 100 | Plus |
Bx42-RA | 1955 | CG8264-RA | 158..1802 | 17..1661 | 8225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9104471..9105333 | 1661..799 | 4315 | 100 | Minus |
X | 23542271 | X | 9105395..9105959 | 802..238 | 2825 | 100 | Minus |
X | 23542271 | X | 9106223..9106447 | 241..17 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:36 has no hits.
BS06685.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:06 Download gff for
BS06685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 1..1644 | 17..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:18 Download gff for
BS06685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 152..1800 | 10..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:04 Download gff for
BS06685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 158..1801 | 17..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:59 Download gff for
BS06685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 156..1799 | 17..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:23 Download gff for
BS06685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 158..1801 | 17..1660 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:23 Download gff for
BS06685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9104472..9105331 | 801..1660 | 100 | <- | Minus |
X | 9105397..9105957 | 240..800 | 100 | <- | Minus |
X | 9106225..9106447 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:04 Download gff for
BS06685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9000258..9000480 | 17..239 | 100 | | Minus |
arm_X | 8998505..8999364 | 801..1660 | 100 | <- | Minus |
arm_X | 8999430..8999990 | 240..800 | 100 | <- | Minus |
BS06685.pep Sequence
Translation from 16 to 1659
> BS06685.pep
MSLSSLLPTPTNAIWDREDERRLVARGAPKIGALVSAKIAAPPYGQRKDW
VPHTDADFGDGGAFPEIHVAQYPLGLGAPGNVGKKSDALAVRLDDKGKVK
YDAIARQGHGKDKIVYSSISQLLPAEVLAEDADELQRPDEETVMETTEET
RLALEKLTNQKITSALPVRHAQKAGPAQYIRYTPSQQGDTFNSGAKQRVI
RMVEAQLDPMEPPKFRINKKIPRGPPSPPAPVLHSPSRKVTVKEQKEWKI
PPCISNWKNAKGYTIPLDKRLAADGRGLQQVHINEKFAKMAEALYIADRK
AREAVEARSQLEKKLAQKEKEKKEDMLRMMAQRAREERAGLRNPEAAEPS
GSGATGSEVRERNDLRAERQRERQRDRNLQRAAPEKRSKLQKERERDISE
QIALGLPAKSAGNGETLFDQRLFNTTKGMDSGYGDDEAYNVYDKPWRDSN
TLGAHIYRPSKQADSDNYGGDLDAIVNTKRFVPDKQFSGASKEAAAGQRS
GPVEFEKEEDPFGLDQFLNMAKKAPKRAEEKNNERSSHSDRKRSKRD*
BS06685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-PB | 547 | CG8264-PB | 1..547 | 1..547 | 2825 | 100 | Plus |
Bx42-PA | 547 | CG8264-PA | 1..547 | 1..547 | 2825 | 100 | Plus |