Clone Sequence Records
BS06691.3prime Sequence
929 bp (820 high quality bases) assembled on 2005-12-04
> BS06691.3prime
ATGGTCTAGAAAGCTTTTAGGTTTTCCGCTTCTGGTCGAGCTGCTGCTGC
GGCAGCTCCTCCTGCAGCTGAAGGATGTGTTCCAGCGGCTGCGGGCGCCC
GTCCTTGTCTATCATCGCCGGCTTTACGATCCCGCCCTGACGCAGCTGTT
CGATGAGATTGACCAGCTGCATAGCCTCGTATTCCTTCTGCTCTTCGCTT
ATGTCGTCCAGATGCGACTTGCTGCGCGGCTCTACGCAGCCAAGGACTGG
ATTGATGCCCTGCTGCTGCTGCTTGTACTCCTCGGTGTCGCTGTCCTCGC
TGTCGGAGGAGTAGTCGGTGCCCTCCACTCGCCGGCAGTCGAGTATACCC
CGCTTGGCAAAGAGCCCGGCTGCGTTGCCATAGCCCGTATATTTGATCAT
CCTGCCGACATTTTCTTTGCACAGTACGAACAGCAGTTCGGCGGACAGAT
CTCGTAGGATCATCGCGGGCAGTGTAAGGAACCGACACAGATGATTGCGC
AGCTCCTGACCAACCTCAGGTCGTTGACTAACGTCCCGCAGCGGCGGCAG
AATCTCCTGGCGTAGATAGTGACGCATAACTCGATCGCTGCGCGCACATT
TCACCAGCACGGTCAGCACTGGGGAAAGCAACTCATGCGAGCTAGCCTCG
GCCTCCTGTTGGGCCAGAGATTGCCTTAGGTAGCGGAGTAGCACGTCCAG
ACTCCGAACATTGCGCTTTTCGAAGCACTGCGAGCAGCACTCACGGGGTT
TGGCTCCCGCTCCAGCTTCTGTATCTTTTTCCTTCTCGTTGTCCTGCTCT
CTTTCCTTGTGCGACTCCAACTCGGCATTGGAGCAACGCAGGGTGAGTTC
TGTCAGGCAGCTGCCGGAGATGTTTGTCAGCAGATTGATGGCGTGTGTGA
CGACGGCGCGATCCTTTTCTGTGGCCAAG
BS06691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15797-PA | 1722 | ric8a-RA | 810..1722 | 929..17 | 4565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ric8a-RB | 2970 | CG15797-RB | 939..1851 | 929..17 | 4565 | 100 | Minus |
ric8a-RA | 2438 | CG15797-RA | 939..1851 | 929..17 | 4565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9257171..9258083 | 929..17 | 4565 | 100 | Minus |
X | 23542271 | X | 9260777..9261235 | 929..471 | 2235 | 99.1 | Minus |
Blast to na_te.dros performed 2015-02-10 19:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2391 | 103..13 | 122 | 59.3 | Minus |
BS06691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:05 Download gff for
BS06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-PA | 810..1722 | 17..929 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:56 Download gff for
BS06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15797-PA | 810..1722 | 17..929 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:13:59 Download gff for
BS06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-RA | 939..1853 | 13..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:09 Download gff for
BS06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-RA | 939..1853 | 13..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:09 Download gff for
BS06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9257171..9258085 | 13..929 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:13:59 Download gff for
BS06691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9151204..9152118 | 13..929 | 99 | | Minus |
BS06691.5prime Sequence
826 bp (825 high quality bases) assembled on 2005-12-04
> BS06691.5prime
GAAGTTATCAGTCGACATGGAAACGGAGCACCTGAAACGACTAGAGGCCA
AGGAGGCGGACCACATTCCCGCCATCCTGGACGAATTCAACACAAAGAAT
GCGGATCTGCTGGTCTTCGACAGTTTCCGCACAGACAACCTGTGGCACGA
ACTGTGGCTGGCCATCTTCGGCATATTGGACGACCAGCGGCTTAGTCATC
TGCATACGCAGTGCCTGAACACGGTGAGGATTCTAACGCGTGACGAGTTC
AGCCTGCAGACGAACTACATCGAACAGGAGGTTAACACCCTGCTGAAGCT
GGCTAGGATTGAGGCCGGCTCACTAAAGCTGCCAGCCACGCCGGACGAGC
TTAAACAGGAGGAACGCGAGGAGCCCCAGCTGGAGCCCAGCCAGGCCCAA
TCGGAGGTGATTGCCGAAGCACTTAAGTGTCTGTGCAACTTGGTCTACCA
GAGCTCCGACTGCAGGCGCCAGTGCCTGCGGCAACACTGCCTGGATGCAA
TCCTGAAGAGGGTGGCGTCCTCGATGCGACATCCCTGTGCGTTGGAGTAC
TACGACATGAAGCTCCTCTTCTTGCTCACTGCATTAGAGCCAGCGGCGCG
CTCTCGCCTCCAAATCGATCTGAATGGCCTCACCTACATGACTAAGTGGC
TGGACGACAAGCTGGGCGAAGACTCAGTTGGCGAGGAGCAGCTGAACATC
ATCTGCGAACTGCTCAAGGTGATGTTCAACGTGACCAGTGCTCCGGACAA
GAGCCCCAACGAATACGAAATCCAGAGCTTGCATTTGACGGGAGTGCTGA
GGGAGCTACTCCTGCGTTTCGGCGAC
BS06691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15797-PA | 1722 | ric8a-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ric8a-RB | 2970 | CG15797-RB | 126..939 | 13..826 | 4070 | 100 | Plus |
ric8a-RA | 2438 | CG15797-RA | 126..939 | 13..826 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9256441..9257171 | 96..826 | 3655 | 100 | Plus |
X | 23542271 | X | 9260652..9260762 | 605..715 | 465 | 94.6 | Plus |
X | 23542271 | X | 9256293..9256377 | 13..97 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:19:56 has no hits.
BS06691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:06 Download gff for
BS06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:57 Download gff for
BS06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15797-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:38:06 Download gff for
BS06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-RA | 126..939 | 13..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:04 Download gff for
BS06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-RA | 126..939 | 13..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:04 Download gff for
BS06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9256293..9256377 | 13..97 | 100 | -> | Plus |
X | 9256443..9257171 | 98..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:38:06 Download gff for
BS06691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9150326..9150410 | 13..97 | 100 | -> | Plus |
arm_X | 9150476..9151204 | 98..826 | 100 | | Plus |
BS06691.complete Sequence
1754 bp assembled on 2007-10-17
GenBank Submission: FJ635589
> BS06691.complete
GAAGTTATCAGTCGACATGGAAACGGAGCACCTGAAACGACTAGAGGCCA
AGGAGGCGGACCACATTCCCGCCATCCTGGACGAATTCAACACAAAGAAT
GCGGATCTGCTGGTCTTCGACAGTTTCCGCACAGACAACCTGTGGCACGA
ACTGTGGCTGGCCATCTTCGGCATATTGGACGACCAGCGGCTTAGTCATC
TGCATACGCAGTGCCTGAACACGGTGAGGATTCTAACGCGTGACGAGTTC
AGCCTGCAGACGAACTACATCGAACAGGAGGTTAACACCCTGCTGAAGCT
GGCTAGGATTGAGGCCGGCTCACTAAAGCTGCCAGCCACGCCGGACGAGC
TTAAACAGGAGGAACGCGAGGAGCCCCAGCTGGAGCCCAGCCAGGCCCAA
TCGGAGGTGATTGCCGAAGCACTTAAGTGTCTGTGCAACTTGGTCTACCA
GAGCTCCGACTGCAGGCGCCAGTGCCTGCGGCAACACTGCCTGGATGCAA
TCCTGAAGAGGGTGGCGTCCTCGATGCGACATCCCTGTGCGTTGGAGTAC
TACGACATGAAGCTCCTCTTCTTGCTCACTGCATTAGAGCCAGCGGCGCG
CTCTCGCCTCCAAATCGATCTGAATGGCCTCACCTACATGACTAAGTGGC
TGGACGACAAGCTGGGCGAAGACTCAGTTGGCGAGGAGCAGCTGAACATC
ATCTGCGAACTGCTCAAGGTGATGTTCAACGTGACCAGTGCTCCGGACAA
GAGCCCCAACGAATACGAAATCCAGAGCTTGCATTTGACGGGAGTGCTGA
GGGAGCTACTCCTGCGTTTCGGCGACTTGGCCACAGAAAAGGATCGCGCC
GTCGTCACACACGCCATCAATCTGCTGACAAACATCTCCGGCAGCTGCCT
GACAGAACTCACCCTGCGTTGCTCCAATGCCGAGTTGGAGTCGCACAAGG
AAAGAGAGCAGGACAACGAGAAGGAAAAAGATACAGAAGCTGGAGCGGGA
GCCAAACCCCGTGAGTGCTGCTCGCAGTGCTTCGAAAAGCGCAATGTTCG
GAGTCTGGACGTGCTACTCCGCTACCTAAGGCAATCTCTGGCCCAACAGG
AGGCCGAGGCTAGCTCGCATGAGTTGCTTTCCCCAGTGCTGACCGTGCTG
GTGAAATGTGCGCGCAGCGATCGAGTTATGCGTCACTATCTACGCCAGGA
GATTCTGCCGCCGCTGCGGGACGTTAGTCAACGACCTGAGGTTGGTCAGG
AGCTGCGCAATCATCTGTGTCGGTTCCTTACACTGCCCGCGATGATCCTA
CGAGATCTGTCCGCCGAACTGCTGTTCGTACTGTGCAAAGAAAATGTCGG
CAGGATGATCAAATATACGGGCTATGGCAACGCAGCCGGGCTCTTTGCCA
AGCGGGGTATACTCGACTGCCGGCGAGTGGAGGGCACCGACTACTCCTCC
GACAGCGAGGACAGCGACACCGAGGAGTACAAGCAGCAGCAGCAGGGCAT
CAATCCAGTCCTTGGCTGCGTAGAGCCGCGCAGCAAGTCGCATCTGGACG
ACATAAGCGAAGAGCAGAAGGAATACGAGGCTATGCAGCTGGTCAATCTC
ATCGAACAGCTGCGTCAGGGCGGGATCGTAAAGCCGGCGATGATAGACAA
GGACGGGCGCCCGCAGCCGCTGGAACACATCCTTCAGCTGCAGGAGGAGC
TGCCGCAGCAGCAGCTCGACCAGAAGCGGAAAACCTAAAAGCTTTCTAGA
CCAT
BS06691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ric8a-RB | 1722 | CG15797-PB | 1..1722 | 17..1738 | 8610 | 100 | Plus |
ric8a-RA | 1722 | CG15797-PA | 1..1722 | 17..1738 | 8610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ric8a-RB | 2970 | CG15797-RB | 126..1851 | 13..1738 | 8630 | 100 | Plus |
ric8a-RA | 2438 | CG15797-RA | 126..1851 | 13..1738 | 8630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9256441..9258083 | 96..1738 | 8215 | 100 | Plus |
X | 23542271 | X | 9260754..9261235 | 803..1284 | 2335 | 99 | Plus |
X | 23542271 | X | 9260652..9260762 | 605..715 | 465 | 94.6 | Plus |
X | 23542271 | X | 9256293..9256377 | 13..97 | 425 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2391 | 1652..1742 | 122 | 59.3 | Plus |
BS06691.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:09 Download gff for
BS06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-RA | 1..1722 | 17..1738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:19 Download gff for
BS06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-RA | 103..1830 | 13..1742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:35 Download gff for
BS06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-RA | 130..1849 | 17..1736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:11 Download gff for
BS06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-RA | 107..1826 | 17..1736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:42 Download gff for
BS06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ric8a-RA | 130..1849 | 17..1736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:42 Download gff for
BS06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9256297..9256377 | 17..97 | 100 | -> | Plus |
X | 9256443..9258081 | 98..1736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:35 Download gff for
BS06691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9150330..9150410 | 17..97 | 100 | -> | Plus |
arm_X | 9150476..9152114 | 98..1736 | 100 | | Plus |
BS06691.pep Sequence
Translation from 16 to 1737
> BS06691.pep
METEHLKRLEAKEADHIPAILDEFNTKNADLLVFDSFRTDNLWHELWLAI
FGILDDQRLSHLHTQCLNTVRILTRDEFSLQTNYIEQEVNTLLKLARIEA
GSLKLPATPDELKQEEREEPQLEPSQAQSEVIAEALKCLCNLVYQSSDCR
RQCLRQHCLDAILKRVASSMRHPCALEYYDMKLLFLLTALEPAARSRLQI
DLNGLTYMTKWLDDKLGEDSVGEEQLNIICELLKVMFNVTSAPDKSPNEY
EIQSLHLTGVLRELLLRFGDLATEKDRAVVTHAINLLTNISGSCLTELTL
RCSNAELESHKEREQDNEKEKDTEAGAGAKPRECCSQCFEKRNVRSLDVL
LRYLRQSLAQQEAEASSHELLSPVLTVLVKCARSDRVMRHYLRQEILPPL
RDVSQRPEVGQELRNHLCRFLTLPAMILRDLSAELLFVLCKENVGRMIKY
TGYGNAAGLFAKRGILDCRRVEGTDYSSDSEDSDTEEYKQQQQGINPVLG
CVEPRSKSHLDDISEEQKEYEAMQLVNLIEQLRQGGIVKPAMIDKDGRPQ
PLEHILQLQEELPQQQLDQKRKT*
BS06691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ric8a-PB | 573 | CG15797-PB | 1..573 | 1..573 | 2948 | 100 | Plus |
ric8a-PA | 573 | CG15797-PA | 1..573 | 1..573 | 2948 | 100 | Plus |