Clone BS06691 Report

Search the DGRC for BS06691

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptric8a-RA
Protein status:BS06691.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06691.3prime Sequence

929 bp (820 high quality bases) assembled on 2005-12-04

> BS06691.3prime
ATGGTCTAGAAAGCTTTTAGGTTTTCCGCTTCTGGTCGAGCTGCTGCTGC
GGCAGCTCCTCCTGCAGCTGAAGGATGTGTTCCAGCGGCTGCGGGCGCCC
GTCCTTGTCTATCATCGCCGGCTTTACGATCCCGCCCTGACGCAGCTGTT
CGATGAGATTGACCAGCTGCATAGCCTCGTATTCCTTCTGCTCTTCGCTT
ATGTCGTCCAGATGCGACTTGCTGCGCGGCTCTACGCAGCCAAGGACTGG
ATTGATGCCCTGCTGCTGCTGCTTGTACTCCTCGGTGTCGCTGTCCTCGC
TGTCGGAGGAGTAGTCGGTGCCCTCCACTCGCCGGCAGTCGAGTATACCC
CGCTTGGCAAAGAGCCCGGCTGCGTTGCCATAGCCCGTATATTTGATCAT
CCTGCCGACATTTTCTTTGCACAGTACGAACAGCAGTTCGGCGGACAGAT
CTCGTAGGATCATCGCGGGCAGTGTAAGGAACCGACACAGATGATTGCGC
AGCTCCTGACCAACCTCAGGTCGTTGACTAACGTCCCGCAGCGGCGGCAG
AATCTCCTGGCGTAGATAGTGACGCATAACTCGATCGCTGCGCGCACATT
TCACCAGCACGGTCAGCACTGGGGAAAGCAACTCATGCGAGCTAGCCTCG
GCCTCCTGTTGGGCCAGAGATTGCCTTAGGTAGCGGAGTAGCACGTCCAG
ACTCCGAACATTGCGCTTTTCGAAGCACTGCGAGCAGCACTCACGGGGTT
TGGCTCCCGCTCCAGCTTCTGTATCTTTTTCCTTCTCGTTGTCCTGCTCT
CTTTCCTTGTGCGACTCCAACTCGGCATTGGAGCAACGCAGGGTGAGTTC
TGTCAGGCAGCTGCCGGAGATGTTTGTCAGCAGATTGATGGCGTGTGTGA
CGACGGCGCGATCCTTTTCTGTGGCCAAG

BS06691.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15797-PA 1722 ric8a-RA 810..1722 929..17 4565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
ric8a-RB 2970 CG15797-RB 939..1851 929..17 4565 100 Minus
ric8a-RA 2438 CG15797-RA 939..1851 929..17 4565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9257171..9258083 929..17 4565 100 Minus
X 23542271 X 9260777..9261235 929..471 2235 99.1 Minus
Blast to na_te.dros performed 2015-02-10 19:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2391 103..13 122 59.3 Minus

BS06691.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:05 Download gff for BS06691.3prime
Subject Subject Range Query Range Percent Splice Strand
ric8a-PA 810..1722 17..929 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:56 Download gff for BS06691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15797-PA 810..1722 17..929 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:13:59 Download gff for BS06691.3prime
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 939..1853 13..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:09 Download gff for BS06691.3prime
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 939..1853 13..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:09 Download gff for BS06691.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9257171..9258085 13..929 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:13:59 Download gff for BS06691.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9151204..9152118 13..929 99   Minus

BS06691.5prime Sequence

826 bp (825 high quality bases) assembled on 2005-12-04

> BS06691.5prime
GAAGTTATCAGTCGACATGGAAACGGAGCACCTGAAACGACTAGAGGCCA
AGGAGGCGGACCACATTCCCGCCATCCTGGACGAATTCAACACAAAGAAT
GCGGATCTGCTGGTCTTCGACAGTTTCCGCACAGACAACCTGTGGCACGA
ACTGTGGCTGGCCATCTTCGGCATATTGGACGACCAGCGGCTTAGTCATC
TGCATACGCAGTGCCTGAACACGGTGAGGATTCTAACGCGTGACGAGTTC
AGCCTGCAGACGAACTACATCGAACAGGAGGTTAACACCCTGCTGAAGCT
GGCTAGGATTGAGGCCGGCTCACTAAAGCTGCCAGCCACGCCGGACGAGC
TTAAACAGGAGGAACGCGAGGAGCCCCAGCTGGAGCCCAGCCAGGCCCAA
TCGGAGGTGATTGCCGAAGCACTTAAGTGTCTGTGCAACTTGGTCTACCA
GAGCTCCGACTGCAGGCGCCAGTGCCTGCGGCAACACTGCCTGGATGCAA
TCCTGAAGAGGGTGGCGTCCTCGATGCGACATCCCTGTGCGTTGGAGTAC
TACGACATGAAGCTCCTCTTCTTGCTCACTGCATTAGAGCCAGCGGCGCG
CTCTCGCCTCCAAATCGATCTGAATGGCCTCACCTACATGACTAAGTGGC
TGGACGACAAGCTGGGCGAAGACTCAGTTGGCGAGGAGCAGCTGAACATC
ATCTGCGAACTGCTCAAGGTGATGTTCAACGTGACCAGTGCTCCGGACAA
GAGCCCCAACGAATACGAAATCCAGAGCTTGCATTTGACGGGAGTGCTGA
GGGAGCTACTCCTGCGTTTCGGCGAC

BS06691.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15797-PA 1722 ric8a-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
ric8a-RB 2970 CG15797-RB 126..939 13..826 4070 100 Plus
ric8a-RA 2438 CG15797-RA 126..939 13..826 4070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9256441..9257171 96..826 3655 100 Plus
X 23542271 X 9260652..9260762 605..715 465 94.6 Plus
X 23542271 X 9256293..9256377 13..97 425 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:19:56 has no hits.

BS06691.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:06 Download gff for BS06691.5prime
Subject Subject Range Query Range Percent Splice Strand
ric8a-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:57 Download gff for BS06691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15797-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:38:06 Download gff for BS06691.5prime
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 126..939 13..826 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:04 Download gff for BS06691.5prime
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 126..939 13..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:04 Download gff for BS06691.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9256293..9256377 13..97 100 -> Plus
X 9256443..9257171 98..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:38:06 Download gff for BS06691.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9150326..9150410 13..97 100 -> Plus
arm_X 9150476..9151204 98..826 100   Plus

BS06691.complete Sequence

1754 bp assembled on 2007-10-17

GenBank Submission: FJ635589

> BS06691.complete
GAAGTTATCAGTCGACATGGAAACGGAGCACCTGAAACGACTAGAGGCCA
AGGAGGCGGACCACATTCCCGCCATCCTGGACGAATTCAACACAAAGAAT
GCGGATCTGCTGGTCTTCGACAGTTTCCGCACAGACAACCTGTGGCACGA
ACTGTGGCTGGCCATCTTCGGCATATTGGACGACCAGCGGCTTAGTCATC
TGCATACGCAGTGCCTGAACACGGTGAGGATTCTAACGCGTGACGAGTTC
AGCCTGCAGACGAACTACATCGAACAGGAGGTTAACACCCTGCTGAAGCT
GGCTAGGATTGAGGCCGGCTCACTAAAGCTGCCAGCCACGCCGGACGAGC
TTAAACAGGAGGAACGCGAGGAGCCCCAGCTGGAGCCCAGCCAGGCCCAA
TCGGAGGTGATTGCCGAAGCACTTAAGTGTCTGTGCAACTTGGTCTACCA
GAGCTCCGACTGCAGGCGCCAGTGCCTGCGGCAACACTGCCTGGATGCAA
TCCTGAAGAGGGTGGCGTCCTCGATGCGACATCCCTGTGCGTTGGAGTAC
TACGACATGAAGCTCCTCTTCTTGCTCACTGCATTAGAGCCAGCGGCGCG
CTCTCGCCTCCAAATCGATCTGAATGGCCTCACCTACATGACTAAGTGGC
TGGACGACAAGCTGGGCGAAGACTCAGTTGGCGAGGAGCAGCTGAACATC
ATCTGCGAACTGCTCAAGGTGATGTTCAACGTGACCAGTGCTCCGGACAA
GAGCCCCAACGAATACGAAATCCAGAGCTTGCATTTGACGGGAGTGCTGA
GGGAGCTACTCCTGCGTTTCGGCGACTTGGCCACAGAAAAGGATCGCGCC
GTCGTCACACACGCCATCAATCTGCTGACAAACATCTCCGGCAGCTGCCT
GACAGAACTCACCCTGCGTTGCTCCAATGCCGAGTTGGAGTCGCACAAGG
AAAGAGAGCAGGACAACGAGAAGGAAAAAGATACAGAAGCTGGAGCGGGA
GCCAAACCCCGTGAGTGCTGCTCGCAGTGCTTCGAAAAGCGCAATGTTCG
GAGTCTGGACGTGCTACTCCGCTACCTAAGGCAATCTCTGGCCCAACAGG
AGGCCGAGGCTAGCTCGCATGAGTTGCTTTCCCCAGTGCTGACCGTGCTG
GTGAAATGTGCGCGCAGCGATCGAGTTATGCGTCACTATCTACGCCAGGA
GATTCTGCCGCCGCTGCGGGACGTTAGTCAACGACCTGAGGTTGGTCAGG
AGCTGCGCAATCATCTGTGTCGGTTCCTTACACTGCCCGCGATGATCCTA
CGAGATCTGTCCGCCGAACTGCTGTTCGTACTGTGCAAAGAAAATGTCGG
CAGGATGATCAAATATACGGGCTATGGCAACGCAGCCGGGCTCTTTGCCA
AGCGGGGTATACTCGACTGCCGGCGAGTGGAGGGCACCGACTACTCCTCC
GACAGCGAGGACAGCGACACCGAGGAGTACAAGCAGCAGCAGCAGGGCAT
CAATCCAGTCCTTGGCTGCGTAGAGCCGCGCAGCAAGTCGCATCTGGACG
ACATAAGCGAAGAGCAGAAGGAATACGAGGCTATGCAGCTGGTCAATCTC
ATCGAACAGCTGCGTCAGGGCGGGATCGTAAAGCCGGCGATGATAGACAA
GGACGGGCGCCCGCAGCCGCTGGAACACATCCTTCAGCTGCAGGAGGAGC
TGCCGCAGCAGCAGCTCGACCAGAAGCGGAAAACCTAAAAGCTTTCTAGA
CCAT

BS06691.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
ric8a-RB 1722 CG15797-PB 1..1722 17..1738 8610 100 Plus
ric8a-RA 1722 CG15797-PA 1..1722 17..1738 8610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
ric8a-RB 2970 CG15797-RB 126..1851 13..1738 8630 100 Plus
ric8a-RA 2438 CG15797-RA 126..1851 13..1738 8630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9256441..9258083 96..1738 8215 100 Plus
X 23542271 X 9260754..9261235 803..1284 2335 99 Plus
X 23542271 X 9260652..9260762 605..715 465 94.6 Plus
X 23542271 X 9256293..9256377 13..97 425 100 Plus
Blast to na_te.dros performed 2014-11-26 15:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2391 1652..1742 122 59.3 Plus

BS06691.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:09 Download gff for BS06691.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 1..1722 17..1738 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:19 Download gff for BS06691.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 103..1830 13..1742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:35 Download gff for BS06691.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 130..1849 17..1736 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:11 Download gff for BS06691.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 107..1826 17..1736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:42 Download gff for BS06691.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 130..1849 17..1736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:42 Download gff for BS06691.complete
Subject Subject Range Query Range Percent Splice Strand
X 9256297..9256377 17..97 100 -> Plus
X 9256443..9258081 98..1736 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:35 Download gff for BS06691.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9150330..9150410 17..97 100 -> Plus
arm_X 9150476..9152114 98..1736 100   Plus

BS06691.pep Sequence

Translation from 16 to 1737

> BS06691.pep
METEHLKRLEAKEADHIPAILDEFNTKNADLLVFDSFRTDNLWHELWLAI
FGILDDQRLSHLHTQCLNTVRILTRDEFSLQTNYIEQEVNTLLKLARIEA
GSLKLPATPDELKQEEREEPQLEPSQAQSEVIAEALKCLCNLVYQSSDCR
RQCLRQHCLDAILKRVASSMRHPCALEYYDMKLLFLLTALEPAARSRLQI
DLNGLTYMTKWLDDKLGEDSVGEEQLNIICELLKVMFNVTSAPDKSPNEY
EIQSLHLTGVLRELLLRFGDLATEKDRAVVTHAINLLTNISGSCLTELTL
RCSNAELESHKEREQDNEKEKDTEAGAGAKPRECCSQCFEKRNVRSLDVL
LRYLRQSLAQQEAEASSHELLSPVLTVLVKCARSDRVMRHYLRQEILPPL
RDVSQRPEVGQELRNHLCRFLTLPAMILRDLSAELLFVLCKENVGRMIKY
TGYGNAAGLFAKRGILDCRRVEGTDYSSDSEDSDTEEYKQQQQGINPVLG
CVEPRSKSHLDDISEEQKEYEAMQLVNLIEQLRQGGIVKPAMIDKDGRPQ
PLEHILQLQEELPQQQLDQKRKT*

BS06691.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
ric8a-PB 573 CG15797-PB 1..573 1..573 2948 100 Plus
ric8a-PA 573 CG15797-PA 1..573 1..573 2948 100 Plus