Clone Sequence Records
BS06692.3prime Sequence
886 bp (808 high quality bases) assembled on 2005-12-04
> BS06692.3prime
ATGGTCTAGAAAGCTTTCAAAATGTAACGTCTTGTATCTCGTTTTGAGCC
TGAGCCTGCGCCTGCATCTTGCACGTGTGCGTCCGATGTGGCGCTGCGGA
CCCAAAGTTGTGCTGCTGCTGGTGTTGCTCCACGCACTCGGCAGGAGCTT
TCGGTAGCGGCAAGGGTCTAATTGAGATTTGCGAGAGATGCTGCGATTGA
TGTATTTGGAAGCGCCTCTTGTAGTATAATGTTGACATTTCTTTTGGGTC
AATATTCACTAGAAATGGCTCTAGATTCCGACTGTGCTCCTTAAAGATGT
CCTCCATGTGCAGCATACAATCTCGCACCTGAGCTTGCTCCACGCTGGTT
AGATCGGTCATCAGACTCAAAAGGAAGTGTAGATTGTGTCCCGATCGCAG
ATGCCACTTTAGGCCATTCATTGACGCAGCTATGCTCGATGCAGCTATGG
TGCTGGCCGAGAACTTGGCAAACTTATGTTCTTTTGCTGCCAACGATATA
AATGCCTGAGCATGTCCCCGCACTTTGCCAATGTTTATGTCCGGAAAGTT
TTTGCTGCCTATCGGCAGGCGCATCATCAGAAGCTCAAGGAAGTCCAAGG
GAGTCACAGATGAGAGGTCCCAGCCCAAGCGACTTAGCACATACAGCTCC
CATTTAATCAAATCATCCTTGTAGATGCTGTTGTCCGTGTAAACAACGAG
TAGATCCACCGAAAGAGCACGACAGCTGGGTTCACGGAGCTTTGAAGCCA
GTAAGAGGCAAGCTGCGGCCAAAATTTGTAGCTGGGTCTTGCGTACTGAT
TTGCTCGAAAGAAATCGATCCCATGTATTTAATGCCAGTAATACGACCTC
TTCCTGGCATTTTTCCTCGGCACACACTTCCATCAT
BS06692.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9096-PC | 1446 | CycD-RC | 642..1446 | 821..17 | 4025 | 100 | Minus |
CG9096-PB | 1446 | CycD-RB | 642..1446 | 821..17 | 4025 | 100 | Minus |
CG9096-PA | 1446 | CycD-RA | 642..1446 | 821..17 | 4025 | 100 | Minus |
CG9096-PC | 1446 | CycD-RC | 577..636 | 886..827 | 275 | 98.3 | Minus |
CG9096-PB | 1446 | CycD-RB | 577..636 | 886..827 | 275 | 98.3 | Minus |
CG9096-PA | 1446 | CycD-RA | 577..636 | 886..827 | 275 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-RF | 2453 | CG9096-RF | 1132..2001 | 886..17 | 4290 | 99.7 | Minus |
CycD-RE | 2256 | CG9096-RE | 935..1804 | 886..17 | 4290 | 99.7 | Minus |
CycD-RD | 2145 | CG9096-RD | 824..1693 | 886..17 | 4290 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15907274..15907591 | 17..334 | 1590 | 100 | Plus |
X | 23542271 | X | 15908097..15908318 | 656..877 | 1020 | 97.3 | Plus |
X | 23542271 | X | 15907859..15908033 | 481..655 | 875 | 100 | Plus |
X | 23542271 | X | 15907653..15907802 | 334..483 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:25:42 has no hits.
BS06692.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:07 Download gff for
BS06692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-PB | 577..1446 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:59 Download gff for
BS06692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9096-PA | 577..1446 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:45 Download gff for
BS06692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 824..1699 | 9..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:51 Download gff for
BS06692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 824..1699 | 9..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:51 Download gff for
BS06692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15907268..15907591 | 9..334 | 98 | <- | Plus |
X | 15907654..15907799 | 335..480 | 100 | <- | Plus |
X | 15907859..15908033 | 481..655 | 100 | <- | Plus |
X | 15908097..15908318 | 656..877 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:45 Download gff for
BS06692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15801301..15801624 | 9..334 | 98 | <- | Plus |
arm_X | 15801687..15801832 | 335..480 | 100 | <- | Plus |
arm_X | 15801892..15802066 | 481..655 | 100 | <- | Plus |
arm_X | 15802130..15802351 | 656..877 | 98 | | Plus |
BS06692.5prime Sequence
936 bp (849 high quality bases) assembled on 2005-12-04
> BS06692.5prime
GAAGTTATCAGTCGACATGGCCGATATAATGGATCTTTTATGCTCGGAAA
TCATAGTCTACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAG
CAGCAAATGTCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTC
ATCCTTGGGGGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATG
CCGTAGTGTGCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGAC
TCGGCTGCGAAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACC
ACCGCCGCCACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGC
GTTACATCAGCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAA
CGCCTGACCACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGC
CATCGGGGATCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCA
AGGTCGAGGAGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAG
AAGGATATTACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGA
AGTGTGTGCCGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAA
ATTACATGGATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTA
CAAATTTTGGCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACC
CAGCTGTCGTGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACA
GCATCTACNAGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGC
TTGGGCTGGGACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCT
GATGATGCGGCTGCCGATAGGCAGCAAAAACTTTCC
BS06692.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9096-PC | 1446 | CycD-RC | 1..920 | 17..936 | 4556 | 99.7 | Plus |
CG9096-PB | 1446 | CycD-RB | 1..920 | 17..936 | 4556 | 99.7 | Plus |
CG9096-PA | 1446 | CycD-RA | 1..920 | 17..936 | 4556 | 99.7 | Plus |
CG8127-PB | 4239 | Eip75B-RB | 811..843 | 287..319 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-RF | 2453 | CG9096-RF | 556..1475 | 17..936 | 4574 | 99.8 | Plus |
CycD-RE | 2256 | CG9096-RE | 359..1278 | 17..936 | 4574 | 99.8 | Plus |
CycD-RD | 2145 | CG9096-RD | 248..1167 | 17..936 | 4574 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15908534..15909121 | 604..17 | 2940 | 100 | Minus |
X | 23542271 | X | 15908097..15908318 | 823..602 | 1099 | 99.5 | Minus |
X | 23542271 | X | 15907921..15908033 | 936..824 | 550 | 99.1 | Minus |
Blast to na_te.dros performed 2015-02-12 00:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 871..994 | 269..391 | 122 | 56.5 | Plus |
BS06692.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:08 Download gff for
BS06692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-PB | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:00 Download gff for
BS06692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9096-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:04:03 Download gff for
BS06692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 245..1167 | 13..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:24:17 Download gff for
BS06692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 245..1167 | 13..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:24:17 Download gff for
BS06692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15907921..15908033 | 824..936 | 99 | <- | Minus |
X | 15908097..15908318 | 602..823 | 99 | <- | Minus |
X | 15908537..15909124 | 13..601 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:04:03 Download gff for
BS06692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15801954..15802066 | 824..936 | 99 | <- | Minus |
arm_X | 15802130..15802351 | 602..823 | 99 | <- | Minus |
arm_X | 15802570..15803157 | 13..601 | 99 | | Minus |
BS06692.complete Sequence
1478 bp (1478 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635590
> BS06692.complete
GAAGTTATCAGTCGACATGGCCGATATAATGGATCTTTTATGCTCGGAAA
TCATAGTCTACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAG
CAGCAAATGTCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTC
ATCCTTGGGGGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATG
CCGTAGTGTGCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGAC
TCGGCTGCGAAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACC
ACCGCCGCCACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGC
GTTACATCAGCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAA
CGCCTGACCACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGC
CATCGGGGATCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCA
AGGTCGAGGAGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAG
AAGGATATTACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGA
AGTGTGTGCCGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAA
ATTACATGGATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTA
CAAATTTTGGCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACC
CAGCTGTCGTGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACA
GCATCTACAAGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGC
TTGGGCTGGGACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCT
GATGATGCGCCTGCCGATAGGCAGCAAAAACTTTCCGGACATAAACATTG
GCAAAGTGCGGGGACATGCTCAGGCATTTATATCGTTGGCAGCAAAAGAA
CATAAGTTTGCCAAGTTCTCGGCCAGCACCATAGCTGCATCGAGCATAGC
TGCGTCAATGAATGGCCTAAAGTGGCATCTGCGATCGGGACACAATCTAC
ACTTCCTTTTGAGTCTGATGACCGATCTAACCAGCGTGGAGCAAGCTCAG
GTGCGAGATTGTATGCTGCACATGGAGGACATCTTTAAGGAGCACAGTCG
GAATCTAGAGCCATTTCTAGTGAATATTGACCCAAAAGAAATGTCAACAT
TATACTACAAGAGGCGCTTCCAAATACATCAATCGCAGCATCTCTCGCAA
ATCTCAATTAGACCCTTGCCGCTACCGAAAGCTCCTGCCGAGTGCGTGGA
GCAACACCAGCAGCAGCACAACTTTGGGTCCGCAGCGCCACATCGGACGC
ACACGTGCAAGATGCAGGCGCAGGCTCAGGCTCAAAACGAGATACAAGAC
GTTACATTTTGAAAGCTTTCTAGACCAT
BS06692.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-RF | 1434 | CG9096-PF | 1..1434 | 29..1462 | 7170 | 100 | Plus |
CycD-RE | 1434 | CG9096-PE | 1..1434 | 29..1462 | 7170 | 100 | Plus |
CycD-RD | 1434 | CG9096-PD | 1..1434 | 29..1462 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-RF | 2453 | CG9096-RF | 556..2001 | 17..1462 | 7230 | 100 | Plus |
CycD-RE | 2256 | CG9096-RE | 359..1804 | 17..1462 | 7230 | 100 | Plus |
CycD-RD | 2145 | CG9096-RD | 248..1693 | 17..1462 | 7230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15908534..15909121 | 604..17 | 2940 | 100 | Minus |
X | 23542271 | X | 15907274..15907591 | 1462..1145 | 1590 | 100 | Minus |
X | 23542271 | X | 15908097..15908318 | 823..602 | 1110 | 100 | Minus |
X | 23542271 | X | 15907859..15908033 | 998..824 | 875 | 100 | Minus |
X | 23542271 | X | 15907653..15907802 | 1145..996 | 750 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 871..994 | 269..391 | 122 | 56.5 | Plus |
BS06692.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:04 Download gff for
BS06692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RA | 1..1446 | 17..1462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:56 Download gff for
BS06692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RF | 552..2006 | 13..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:25 Download gff for
BS06692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 248..1692 | 17..1461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:04 Download gff for
BS06692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RA | 205..1659 | 13..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:06 Download gff for
BS06692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 248..1692 | 17..1461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:06 Download gff for
BS06692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15907275..15907591 | 1145..1461 | 100 | <- | Minus |
X | 15907654..15907799 | 999..1144 | 100 | <- | Minus |
X | 15907859..15908033 | 824..998 | 100 | <- | Minus |
X | 15908097..15908318 | 602..823 | 100 | <- | Minus |
X | 15908537..15909121 | 17..601 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:25 Download gff for
BS06692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15801308..15801624 | 1145..1461 | 100 | <- | Minus |
arm_X | 15801687..15801832 | 999..1144 | 100 | <- | Minus |
arm_X | 15801892..15802066 | 824..998 | 100 | <- | Minus |
arm_X | 15802130..15802351 | 602..823 | 100 | <- | Minus |
arm_X | 15802570..15803154 | 17..601 | 100 | | Minus |
BS06692.pep Sequence
Translation from 16 to 1461
> BS06692.pep
MADIMDLLCSEIIVYESDPSLYRLNKRQQQMSSPAIIRDQSSICSSLGDA
ESDSHPDAQNNAVVCNMKELVYIYASVDSAAKNPEQLEPPPPPPPPPPPP
PTATQSIQSYPRYISQEPPTSHCQRLDERLTTTADPPATDNVNTAIGDPT
LYSDRCLENFLKVEEKHHKIPDTYFSIQKDITPPMRKIVAEWMMEVCAEE
NCQEEVVLLALNYMDRFLSSKSVRKTQLQILAAACLLLASKLREPSCRAL
SVDLLVVYTDNSIYKDDLIKWELYVLSRLGWDLSSVTPLDFLELLMMRLP
IGSKNFPDINIGKVRGHAQAFISLAAKEHKFAKFSASTIAASSIAASMNG
LKWHLRSGHNLHFLLSLMTDLTSVEQAQVRDCMLHMEDIFKEHSRNLEPF
LVNIDPKEMSTLYYKRRFQIHQSQHLSQISIRPLPLPKAPAECVEQHQQQ
HNFGSAAPHRTHTCKMQAQAQAQNEIQDVTF*
BS06692.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-PF | 477 | CG9096-PF | 1..477 | 5..481 | 2496 | 100 | Plus |
CycD-PE | 477 | CG9096-PE | 1..477 | 5..481 | 2496 | 100 | Plus |
CycD-PD | 477 | CG9096-PD | 1..477 | 5..481 | 2496 | 100 | Plus |
CycA-PC | 490 | CG5940-PC | 202..339 | 152..292 | 187 | 34 | Plus |
CycA-PA | 491 | CG5940-PA | 203..340 | 152..292 | 187 | 34 | Plus |