Clone BS06692 Report

Search the DGRC for BS06692

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCycD-RD
Protein status:BS06692.pep: gold
Sequenced Size:16

Clone Sequence Records

BS06692.3prime Sequence

886 bp (808 high quality bases) assembled on 2005-12-04

> BS06692.3prime
ATGGTCTAGAAAGCTTTCAAAATGTAACGTCTTGTATCTCGTTTTGAGCC
TGAGCCTGCGCCTGCATCTTGCACGTGTGCGTCCGATGTGGCGCTGCGGA
CCCAAAGTTGTGCTGCTGCTGGTGTTGCTCCACGCACTCGGCAGGAGCTT
TCGGTAGCGGCAAGGGTCTAATTGAGATTTGCGAGAGATGCTGCGATTGA
TGTATTTGGAAGCGCCTCTTGTAGTATAATGTTGACATTTCTTTTGGGTC
AATATTCACTAGAAATGGCTCTAGATTCCGACTGTGCTCCTTAAAGATGT
CCTCCATGTGCAGCATACAATCTCGCACCTGAGCTTGCTCCACGCTGGTT
AGATCGGTCATCAGACTCAAAAGGAAGTGTAGATTGTGTCCCGATCGCAG
ATGCCACTTTAGGCCATTCATTGACGCAGCTATGCTCGATGCAGCTATGG
TGCTGGCCGAGAACTTGGCAAACTTATGTTCTTTTGCTGCCAACGATATA
AATGCCTGAGCATGTCCCCGCACTTTGCCAATGTTTATGTCCGGAAAGTT
TTTGCTGCCTATCGGCAGGCGCATCATCAGAAGCTCAAGGAAGTCCAAGG
GAGTCACAGATGAGAGGTCCCAGCCCAAGCGACTTAGCACATACAGCTCC
CATTTAATCAAATCATCCTTGTAGATGCTGTTGTCCGTGTAAACAACGAG
TAGATCCACCGAAAGAGCACGACAGCTGGGTTCACGGAGCTTTGAAGCCA
GTAAGAGGCAAGCTGCGGCCAAAATTTGTAGCTGGGTCTTGCGTACTGAT
TTGCTCGAAAGAAATCGATCCCATGTATTTAATGCCAGTAATACGACCTC
TTCCTGGCATTTTTCCTCGGCACACACTTCCATCAT

BS06692.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9096-PC 1446 CycD-RC 642..1446 821..17 4025 100 Minus
CG9096-PB 1446 CycD-RB 642..1446 821..17 4025 100 Minus
CG9096-PA 1446 CycD-RA 642..1446 821..17 4025 100 Minus
CG9096-PC 1446 CycD-RC 577..636 886..827 275 98.3 Minus
CG9096-PB 1446 CycD-RB 577..636 886..827 275 98.3 Minus
CG9096-PA 1446 CycD-RA 577..636 886..827 275 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-RF 2453 CG9096-RF 1132..2001 886..17 4290 99.7 Minus
CycD-RE 2256 CG9096-RE 935..1804 886..17 4290 99.7 Minus
CycD-RD 2145 CG9096-RD 824..1693 886..17 4290 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15907274..15907591 17..334 1590 100 Plus
X 23542271 X 15908097..15908318 656..877 1020 97.3 Plus
X 23542271 X 15907859..15908033 481..655 875 100 Plus
X 23542271 X 15907653..15907802 334..483 750 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:25:42 has no hits.

BS06692.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:07 Download gff for BS06692.3prime
Subject Subject Range Query Range Percent Splice Strand
CycD-PB 577..1446 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:30:59 Download gff for BS06692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9096-PA 577..1446 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:45 Download gff for BS06692.3prime
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 824..1699 9..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:51 Download gff for BS06692.3prime
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 824..1699 9..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:51 Download gff for BS06692.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15907268..15907591 9..334 98 <- Plus
X 15907654..15907799 335..480 100 <- Plus
X 15907859..15908033 481..655 100 <- Plus
X 15908097..15908318 656..877 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:45 Download gff for BS06692.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15801301..15801624 9..334 98 <- Plus
arm_X 15801687..15801832 335..480 100 <- Plus
arm_X 15801892..15802066 481..655 100 <- Plus
arm_X 15802130..15802351 656..877 98   Plus

BS06692.5prime Sequence

936 bp (849 high quality bases) assembled on 2005-12-04

> BS06692.5prime
GAAGTTATCAGTCGACATGGCCGATATAATGGATCTTTTATGCTCGGAAA
TCATAGTCTACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAG
CAGCAAATGTCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTC
ATCCTTGGGGGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATG
CCGTAGTGTGCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGAC
TCGGCTGCGAAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACC
ACCGCCGCCACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGC
GTTACATCAGCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAA
CGCCTGACCACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGC
CATCGGGGATCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCA
AGGTCGAGGAGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAG
AAGGATATTACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGA
AGTGTGTGCCGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAA
ATTACATGGATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTA
CAAATTTTGGCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACC
CAGCTGTCGTGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACA
GCATCTACNAGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGC
TTGGGCTGGGACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCT
GATGATGCGGCTGCCGATAGGCAGCAAAAACTTTCC

BS06692.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9096-PC 1446 CycD-RC 1..920 17..936 4556 99.7 Plus
CG9096-PB 1446 CycD-RB 1..920 17..936 4556 99.7 Plus
CG9096-PA 1446 CycD-RA 1..920 17..936 4556 99.7 Plus
CG8127-PB 4239 Eip75B-RB 811..843 287..319 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-RF 2453 CG9096-RF 556..1475 17..936 4574 99.8 Plus
CycD-RE 2256 CG9096-RE 359..1278 17..936 4574 99.8 Plus
CycD-RD 2145 CG9096-RD 248..1167 17..936 4574 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15908534..15909121 604..17 2940 100 Minus
X 23542271 X 15908097..15908318 823..602 1099 99.5 Minus
X 23542271 X 15907921..15908033 936..824 550 99.1 Minus
Blast to na_te.dros performed 2015-02-12 00:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 871..994 269..391 122 56.5 Plus

BS06692.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:08 Download gff for BS06692.5prime
Subject Subject Range Query Range Percent Splice Strand
CycD-PB 1..920 17..936 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:00 Download gff for BS06692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9096-PA 1..920 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:04:03 Download gff for BS06692.5prime
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 245..1167 13..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:24:17 Download gff for BS06692.5prime
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 245..1167 13..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:24:17 Download gff for BS06692.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15907921..15908033 824..936 99 <- Minus
X 15908097..15908318 602..823 99 <- Minus
X 15908537..15909124 13..601 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:04:03 Download gff for BS06692.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15801954..15802066 824..936 99 <- Minus
arm_X 15802130..15802351 602..823 99 <- Minus
arm_X 15802570..15803157 13..601 99   Minus

BS06692.complete Sequence

1478 bp (1478 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635590

> BS06692.complete
GAAGTTATCAGTCGACATGGCCGATATAATGGATCTTTTATGCTCGGAAA
TCATAGTCTACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAG
CAGCAAATGTCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTC
ATCCTTGGGGGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATG
CCGTAGTGTGCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGAC
TCGGCTGCGAAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACC
ACCGCCGCCACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGC
GTTACATCAGCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAA
CGCCTGACCACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGC
CATCGGGGATCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCA
AGGTCGAGGAGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAG
AAGGATATTACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGA
AGTGTGTGCCGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAA
ATTACATGGATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTA
CAAATTTTGGCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACC
CAGCTGTCGTGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACA
GCATCTACAAGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGC
TTGGGCTGGGACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCT
GATGATGCGCCTGCCGATAGGCAGCAAAAACTTTCCGGACATAAACATTG
GCAAAGTGCGGGGACATGCTCAGGCATTTATATCGTTGGCAGCAAAAGAA
CATAAGTTTGCCAAGTTCTCGGCCAGCACCATAGCTGCATCGAGCATAGC
TGCGTCAATGAATGGCCTAAAGTGGCATCTGCGATCGGGACACAATCTAC
ACTTCCTTTTGAGTCTGATGACCGATCTAACCAGCGTGGAGCAAGCTCAG
GTGCGAGATTGTATGCTGCACATGGAGGACATCTTTAAGGAGCACAGTCG
GAATCTAGAGCCATTTCTAGTGAATATTGACCCAAAAGAAATGTCAACAT
TATACTACAAGAGGCGCTTCCAAATACATCAATCGCAGCATCTCTCGCAA
ATCTCAATTAGACCCTTGCCGCTACCGAAAGCTCCTGCCGAGTGCGTGGA
GCAACACCAGCAGCAGCACAACTTTGGGTCCGCAGCGCCACATCGGACGC
ACACGTGCAAGATGCAGGCGCAGGCTCAGGCTCAAAACGAGATACAAGAC
GTTACATTTTGAAAGCTTTCTAGACCAT

BS06692.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-RF 1434 CG9096-PF 1..1434 29..1462 7170 100 Plus
CycD-RE 1434 CG9096-PE 1..1434 29..1462 7170 100 Plus
CycD-RD 1434 CG9096-PD 1..1434 29..1462 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-RF 2453 CG9096-RF 556..2001 17..1462 7230 100 Plus
CycD-RE 2256 CG9096-RE 359..1804 17..1462 7230 100 Plus
CycD-RD 2145 CG9096-RD 248..1693 17..1462 7230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15908534..15909121 604..17 2940 100 Minus
X 23542271 X 15907274..15907591 1462..1145 1590 100 Minus
X 23542271 X 15908097..15908318 823..602 1110 100 Minus
X 23542271 X 15907859..15908033 998..824 875 100 Minus
X 23542271 X 15907653..15907802 1145..996 750 100 Minus
Blast to na_te.dros performed 2014-11-27 14:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 871..994 269..391 122 56.5 Plus

BS06692.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:12:04 Download gff for BS06692.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RA 1..1446 17..1462 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:56 Download gff for BS06692.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RF 552..2006 13..1470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:25 Download gff for BS06692.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 248..1692 17..1461 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:12:04 Download gff for BS06692.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RA 205..1659 13..1470 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:06 Download gff for BS06692.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 248..1692 17..1461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:06 Download gff for BS06692.complete
Subject Subject Range Query Range Percent Splice Strand
X 15907275..15907591 1145..1461 100 <- Minus
X 15907654..15907799 999..1144 100 <- Minus
X 15907859..15908033 824..998 100 <- Minus
X 15908097..15908318 602..823 100 <- Minus
X 15908537..15909121 17..601 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:25 Download gff for BS06692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15801308..15801624 1145..1461 100 <- Minus
arm_X 15801687..15801832 999..1144 100 <- Minus
arm_X 15801892..15802066 824..998 100 <- Minus
arm_X 15802130..15802351 602..823 100 <- Minus
arm_X 15802570..15803154 17..601 100   Minus

BS06692.pep Sequence

Translation from 16 to 1461

> BS06692.pep
MADIMDLLCSEIIVYESDPSLYRLNKRQQQMSSPAIIRDQSSICSSLGDA
ESDSHPDAQNNAVVCNMKELVYIYASVDSAAKNPEQLEPPPPPPPPPPPP
PTATQSIQSYPRYISQEPPTSHCQRLDERLTTTADPPATDNVNTAIGDPT
LYSDRCLENFLKVEEKHHKIPDTYFSIQKDITPPMRKIVAEWMMEVCAEE
NCQEEVVLLALNYMDRFLSSKSVRKTQLQILAAACLLLASKLREPSCRAL
SVDLLVVYTDNSIYKDDLIKWELYVLSRLGWDLSSVTPLDFLELLMMRLP
IGSKNFPDINIGKVRGHAQAFISLAAKEHKFAKFSASTIAASSIAASMNG
LKWHLRSGHNLHFLLSLMTDLTSVEQAQVRDCMLHMEDIFKEHSRNLEPF
LVNIDPKEMSTLYYKRRFQIHQSQHLSQISIRPLPLPKAPAECVEQHQQQ
HNFGSAAPHRTHTCKMQAQAQAQNEIQDVTF*

BS06692.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-PF 477 CG9096-PF 1..477 5..481 2496 100 Plus
CycD-PE 477 CG9096-PE 1..477 5..481 2496 100 Plus
CycD-PD 477 CG9096-PD 1..477 5..481 2496 100 Plus
CycA-PC 490 CG5940-PC 202..339 152..292 187 34 Plus
CycA-PA 491 CG5940-PA 203..340 152..292 187 34 Plus