Clone Sequence Records
BS06695.3prime Sequence
915 bp (754 high quality bases) assembled on 2005-12-04
> BS06695.3prime
ATGGTCTAGAAAGCTTCTACTGCTGTGCGGTGGGAGCAGTTTCCGCTGCC
GTGCGGTTGGCATCCTCCGGTTTCATGGCGGGGAACAGCAGAACCTCCTT
GATGTTGTTGGAGTCCGTGAGGAACATGGCCAGGCGATCGATGCCCATGC
CAAAACCACCGGTGGGCGGCAGTCCGTACTCCAGGGACGTGCAGAAGTTC
TCGTCGACCAGCTGGGCCTCATCATCGCCGGCCGCCTTGTCGCTGGCCTG
CTGCTCGAAACGCTCGCGCTGCACAACCGGATCGTTCAACTCGGTATACG
CGTTGCAAATCTCCTTCTTGGCCACAAACAGTTCGAAGCGCTCCGTCAGG
CCGGGAATACTGCGATGGTACTTGGCCAGCGGCGACATGATCTGCGGATG
CTCACAGATGAACGTTGGATTCACGCAAAACTCCTCGATGAATTCGCCGA
CGAGCTTGTCCAGCAGGCGGGCAGTGGTGCGCGGAGCTGGGCACTCGACC
TGGTGCTTAGCGCACAGCTGAGACAGGAACTGATTCGTCTCTGGCGAATT
GAAGGTGTCGGCCGCGGGGAACTTCACCTGCAGCTTCTCTTCCAGCGTTT
TGATCATGGATACGCGCTTAAAGGGCGGCGTAAAGTCAAGTTCTTGCTCA
GGTCCCTCTGGACCCTCCGGATGATAGATGACCTTGTAGGAGCCACGGAT
CGCTTTCACCATTCCCGAGACCAACTGCTCGGTGATATCCATAATGTCAG
CGTAGTCGGCATACGCCATGTAGAACTCGCACGTGGTGAATTCAGGATTG
TGGGTGAGGTCGATGCCCTCGTTGCGGAACTGCCGTCCGATCTCGTACAC
ACGATCGAGTCCACCCACCACCAGCATCTTGTGATACAGCTCGGGAGCAA
TGCGCATGAACAGAT
BS06695.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12141-PA | 1725 | Aats-lys-RA | 827..1725 | 915..17 | 4470 | 99.8 | Minus |
CG12141-PB | 1824 | Aats-lys-RB | 926..1824 | 915..17 | 4470 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-lys-RC | 2160 | CG12141-RC | 1152..2051 | 915..16 | 4485 | 99.9 | Minus |
Aats-lys-RB | 2223 | CG12141-RB | 1215..2114 | 915..16 | 4485 | 99.9 | Minus |
Aats-lys-RA | 1969 | CG12141-RA | 961..1860 | 915..16 | 4485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9606612..9607437 | 90..915 | 4085 | 99.6 | Plus |
X | 23542271 | X | 9606472..9606555 | 16..99 | 420 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 14:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 7727..7764 | 317..280 | 118 | 78.9 | Minus |
BS06695.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:14 Download gff for
BS06695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12141-PA | 827..1725 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:07 Download gff for
BS06695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12141-PB | 926..1824 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:06:07 Download gff for
BS06695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-lys-RA | 961..1860 | 16..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:36:53 Download gff for
BS06695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-lys-RA | 961..1860 | 16..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:36:53 Download gff for
BS06695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9606472..9606553 | 16..97 | 100 | <- | Plus |
X | 9606620..9607437 | 98..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:06:07 Download gff for
BS06695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9500505..9500586 | 16..97 | 100 | <- | Plus |
arm_X | 9500653..9501470 | 98..915 | 99 | | Plus |
BS06695.5prime Sequence
885 bp (832 high quality bases) assembled on 2005-12-04
> BS06695.5prime
GAAGTTATCAGTCGACATGGCCGCTGCAAGTGGAGAACTGTCCAAGAATG
AGCTAAAGCGTCGCCTGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCTGAG
AAGGCGGCCGCTGCGCCGGCGGAAAATACTGCTGGCAAGAAGAAGAGCAG
TGCCGCCGAGGAGGAGGAGATCTCGCCGAATGAATACTTTAAGCTGCGCT
CCGCCGCCGTTCAGGAGCTGAAACGTTCACCCGCAACGGATCCCTATCCA
CACAAGTTCCATGTGAGTAGCTCGCTGGAAGACTTCATTGCCAAGTACGA
GAACAGCCTCAAGGAGGGCGAGACCCTGGAGAATGTCAAACTGAGCGTGG
CTGGGCGCGTGCATGCCATACGCGAGTCGGGCGCCAAGCTCATTTTCTAC
GATCTGCGCGGCGAGGGCGTCAAGGTGCAGGTGATGGCCAGCGCTAAGTC
CTACAAGTCGGAGGCGGATTTCGAAATCGATACGTCCAAATTGCGACGTG
GTGATATCATCGGCGTTGTCGGACATCCCGGCAAAACCAAGAAGGGTGAA
CTGTCCGTTATGCCCAGCGAGATCAAGCTGCTATCGCCCTGTCTACACAT
GCTGCCCCATCTGCATTTCGGGTTGAAGGACAAGGAGACGCGCTACCGCC
AGCGCTATCTTGATCTCATTCTCAACAACAATGTGCGAGAGAAATTCCAG
ATCCGTGCCAAGATCATCTCGTACGTGCGTCAGTTCCTGGATCGTCTGGG
TTTCCTGGAGATCGAGACGCCCATGATGAACATGATCGCCGGTGGAGCCA
CTGCCAAGCCCTTCGTGACGCATCACAATGACCTCAAGATGGATCTGTTC
ATGCGCATTGCTCCGGAGCTGTATCACAAGATGCT
BS06695.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12141-PA | 1725 | Aats-lys-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
CG12141-PB | 1824 | Aats-lys-RB | 132..968 | 49..885 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-lys-RA | 1969 | CG12141-RA | 134..1003 | 16..885 | 4350 | 100 | Plus |
Aats-lys-RC | 2160 | CG12141-RC | 358..1194 | 49..885 | 4185 | 100 | Plus |
Aats-lys-RB | 2223 | CG12141-RB | 421..1257 | 49..885 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9607629..9608292 | 712..49 | 3320 | 100 | Minus |
X | 23542271 | X | 9607395..9607569 | 885..711 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:51:59 has no hits.
BS06695.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:15 Download gff for
BS06695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12141-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:08 Download gff for
BS06695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12141-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:04:52 Download gff for
BS06695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-lys-RA | 128..1003 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:21 Download gff for
BS06695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-lys-RA | 128..1003 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:21 Download gff for
BS06695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9607395..9607567 | 713..885 | 100 | <- | Minus |
X | 9607629..9608292 | 49..712 | 100 | <- | Minus |
X | 9608719..9608757 | 9..48 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:04:52 Download gff for
BS06695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9501428..9501600 | 713..885 | 100 | <- | Minus |
arm_X | 9501662..9502325 | 49..712 | 100 | <- | Minus |
arm_X | 9502752..9502790 | 9..48 | 92 | | Minus |
BS06695.complete Sequence
1757 bp assembled on 2007-10-17
GenBank Submission: FJ635591
> BS06695.complete
GAAGTTATCAGTCGACATGGCCGCTGCAAGTGGAGAACTGTCCAAGAATG
AGCTAAAGCGTCGCCTGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCTGAG
AAGGCGGCCGCTGCGCCGGCGGAAAATACTGCTGGCAAGAAGAAGAGCAG
TGCCGCCGAGGAGGAGGAGATCTCGCCGAATGAATACTTTAAGCTGCGCT
CCGCCGCCGTTCAGGAGCTGAAACGTTCACCCGCAACGGATCCCTATCCA
CACAAGTTCCATGTGAGTAGCTCGCTGGAAGACTTCATTGCCAAGTACGA
GAACAGCCTCAAGGAGGGCGAGACCCTGGAGAATGTCAAACTGAGCGTGG
CTGGGCGCGTGCATGCCATACGCGAGTCGGGCGCCAAGCTCATTTTCTAC
GATCTGCGCGGCGAGGGCGTCAAGGTGCAGGTGATGGCCAGCGCTAAGTC
CTACAAGTCGGAGGCGGATTTCGAAATCGATACGTCCAAATTGCGACGTG
GTGATATCATCGGCGTTGTCGGACATCCCGGCAAAACCAAGAAGGGTGAA
CTGTCCGTTATGCCCAGCGAGATCAAGCTGCTATCGCCCTGTCTACACAT
GCTGCCCCATCTGCATTTCGGGTTGAAGGACAAGGAGACGCGCTACCGCC
AGCGCTATCTTGATCTCATTCTCAACAACAATGTGCGAGAGAAATTCCAG
ATCCGTGCCAAGATCATCTCGTACGTGCGTCAGTTCCTGGATCGTCTGGG
TTTCCTGGAGATCGAGACGCCCATGATGAACATGATCGCCGGTGGAGCCA
CTGCCAAGCCCTTCGTGACGCATCACAATGACCTCAAGATGGATCTGTTC
ATGCGCATTGCTCCGGAGCTGTATCACAAGATGCTGGTGGTGGGTGGACT
CGATCGTGTGTACGAGATCGGACGGCAGTTCCGCAACGAGGGCATCGACC
TCACCCACAATCCTGAATTCACCACGTGCGAGTTCTACATGGCGTATGCC
GACTACGCTGACATTATGGATATCACCGAGCAGTTGGTCTCGGGAATGGT
GAAAGCGATCCGTGGCTCCTACAAGGTCATCTATCATCCGGAGGGTCCAG
AGGGACCTGAGCAAGAACTTGACTTTACGCCGCCCTTTAAGCGCGTATCC
ATGATCAAAACGCTGGAAGAGAAGCTGCAGGTGAAGTTCCCCGCGGCCGA
CACCTTCAATTCGCCAGAGACGAATCAGTTCCTGTCTCAGCTGTGCGCTA
AGCACCAGGTCGAGTGCCCAGCTCCGCGCACCACTGCCCGCCTGCTGGAC
AAGCTCGTCGGCGAATTCATCGAGGAGTTTTGCGTGAATCCAACGTTCAT
CTGTGAGCATCCGCAGATCATGTCGCCGCTGGCCAAGTACCATCGCAGTA
TTCCCGGCCTGACGGAGCGCTTCGAACTGTTTGTGGCCAAGAAGGAGATT
TGCAACGCGTATACCGAGTTGAACGATCCGGTTGTGCAGCGCGAGCGTTT
CGAGCAGCAGGCCAGCGACAAGGCGGCCGGCGATGATGAGGCCCAGCTGG
TCGACGAGAACTTCTGCACGTCCCTGGAGTACGGACTGCCGCCCACCGGT
GGTTTTGGCATGGGCATCGATCGCCTGGCCATGTTCCTCACGGACTCCAA
CAACATCAAGGAGGTTCTGCTGTTCCCCGCCATGAAACCGGAGGATGCCA
ACCGCACGGCAGCGGAAACTGCTCCCACCGCACAGCAGTAGAAGCTTTCT
AGACCAT
BS06695.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-lys-RA | 1725 | CG12141-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Aats-lys-RC | 1824 | CG12141-PC | 132..1824 | 49..1741 | 8465 | 100 | Plus |
Aats-lys-RB | 1824 | CG12141-PB | 132..1824 | 49..1741 | 8465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-lys-RA | 1969 | CG12141-RA | 134..1860 | 16..1742 | 8635 | 100 | Plus |
Aats-lys-RC | 2160 | CG12141-RC | 358..2051 | 49..1742 | 8470 | 100 | Plus |
Aats-lys-RB | 2223 | CG12141-RB | 421..2114 | 49..1742 | 8470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9606612..9607569 | 1668..711 | 4760 | 99.8 | Minus |
X | 23542271 | X | 9607629..9608292 | 712..49 | 3320 | 100 | Minus |
X | 23542271 | X | 9606472..9606555 | 1742..1659 | 420 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 7727..7764 | 1441..1478 | 118 | 78.9 | Plus |
BS06695.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:10 Download gff for
BS06695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-lys-RA | 1..1725 | 17..1741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:21 Download gff for
BS06695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-lys-RA | 128..1860 | 9..1742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:21 Download gff for
BS06695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-lys-RA | 135..1859 | 17..1741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:50 Download gff for
BS06695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-lys-RA | 135..1859 | 17..1741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:52 Download gff for
BS06695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-lys-RA | 135..1859 | 17..1741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:52 Download gff for
BS06695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9606473..9606553 | 1661..1741 | 100 | <- | Minus |
X | 9606620..9607567 | 713..1660 | 100 | <- | Minus |
X | 9607629..9608292 | 49..712 | 100 | <- | Minus |
X | 9608719..9608750 | 17..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:21 Download gff for
BS06695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9500506..9500586 | 1661..1741 | 100 | <- | Minus |
arm_X | 9500653..9501600 | 713..1660 | 100 | <- | Minus |
arm_X | 9501662..9502325 | 49..712 | 100 | <- | Minus |
arm_X | 9502752..9502783 | 17..48 | 100 | | Minus |
BS06695.pep Sequence
Translation from 16 to 1740
> BS06695.pep
MAAASGELSKNELKRRLKAEQKAKEKAEKAAAAPAENTAGKKKSSAAEEE
EISPNEYFKLRSAAVQELKRSPATDPYPHKFHVSSSLEDFIAKYENSLKE
GETLENVKLSVAGRVHAIRESGAKLIFYDLRGEGVKVQVMASAKSYKSEA
DFEIDTSKLRRGDIIGVVGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLH
FGLKDKETRYRQRYLDLILNNNVREKFQIRAKIISYVRQFLDRLGFLEIE
TPMMNMIAGGATAKPFVTHHNDLKMDLFMRIAPELYHKMLVVGGLDRVYE
IGRQFRNEGIDLTHNPEFTTCEFYMAYADYADIMDITEQLVSGMVKAIRG
SYKVIYHPEGPEGPEQELDFTPPFKRVSMIKTLEEKLQVKFPAADTFNSP
ETNQFLSQLCAKHQVECPAPRTTARLLDKLVGEFIEEFCVNPTFICEHPQ
IMSPLAKYHRSIPGLTERFELFVAKKEICNAYTELNDPVVQRERFEQQAS
DKAAGDDEAQLVDENFCTSLEYGLPPTGGFGMGIDRLAMFLTDSNNIKEV
LLFPAMKPEDANRTAAETAPTAQQ*
BS06695.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-lys-PA | 574 | CG12141-PA | 1..574 | 1..574 | 2963 | 100 | Plus |
Aats-lys-PC | 607 | CG12141-PC | 42..607 | 9..574 | 2915 | 99.6 | Plus |
Aats-lys-PB | 607 | CG12141-PB | 42..607 | 9..574 | 2915 | 99.6 | Plus |
CG31739-PC | 1082 | CG31739-PC | 337..654 | 6..339 | 196 | 23.5 | Plus |
CG31739-PB | 1082 | CG31739-PB | 337..654 | 6..339 | 196 | 23.5 | Plus |