Clone BS06696 Report

Search the DGRC for BS06696

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:66
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCatsup-RA
Protein status:BS06696.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06696.3prime Sequence

920 bp (821 high quality bases) assembled on 2005-12-04

> BS06696.3prime
ATGGTCTAGAAAGCTTTTACTCGAACTTGGCGATAACGATCATTAGGGCT
ACGCCGGTTAGCAGCGCAAAGATTTCCTTCAGCGACTGTTTCAGTTTCGT
AGACTCCTCAAGCAGCTCCGGCAGGACACTCACTGTTGCGATGTAAATAA
AACCGCCGGCTGTGAAGGGCAAGACCCATGGGGCCGATCCGTCCCCGCCT
CCAGCTCCCAGAAGAGCTAGCGCTGTGCCCGCCAAAGCTCCGAGCGCTGT
GACGAGCTGCAGAAGCATTGCCTTTCGCCTGGAACAGCCAGACTTTATAA
GAATGGCAAAGTCACCAATCTCATGGGGCACTTCGTGCAGCAGAATAGTG
ATAGTGGTCACAATGCCAATGCTGTTGCCCGCCAAATAGGAGGCGCCGAT
GGCCAGGCCATCGGTGAAGTTGTGAGCAAAGTCCGCCGCCAAATTCAAGT
AGCCGGAAATCTCCACTTCGCCTTCTGGCTCCGCTTCTGGTTTCTTGGAC
TTGATCTTGGCTGGCTTTGCCGGTTTGTCTCCATCTCCGCTGTCTTCTTT
GTCAGAGGACTTTTTCTTAGCAGGCACTGGTTTTGGCTTTGGTGCTCCAT
GGCTGTGGCCGTGTCCTCCATGACCGCCCTTTAGAATGCGTACCAGTTTC
TCCACTGAAAGGAAGGCAATGATTCCTCCAAGGACCCACAGACCAATGCT
CATATCGTGGCTGTGACCATGTTCATGCTCCTCGCCATCATGATGATGAT
GGTGATCATGGCCGTGATCGTGGCCGTGTTCTCCATGACTGTGTGGATGC
GTGGCATGAGGAATCAAGTGCAGAAAGGCATCACCCAACAAACCGCCAGA
AGCAAAGGCCAGAAGCACTTTGAGACGCGGCTTCATCGCCTCACTGTTGT
CTAGGGGAATGATATACAGC

BS06696.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10449-PA 1350 Catsup-RA 447..1350 920..17 4520 100 Minus
CG15022-PA 888 CG15022-RA 87..113 773..747 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-RA 1698 CG10449-RA 531..1434 920..17 4520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19042447..19043350 920..17 4520 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:07:06 has no hits.

BS06696.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:16 Download gff for BS06696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10449-PA 447..1350 17..920 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:10 Download gff for BS06696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10449-PA 447..1350 17..920 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:13:17 Download gff for BS06696.3prime
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 531..1434 17..920 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:17 Download gff for BS06696.3prime
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 531..1434 17..920 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:17 Download gff for BS06696.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19042447..19043350 17..920 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:13:17 Download gff for BS06696.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19042447..19043350 17..920 100   Minus

BS06696.5prime Sequence

887 bp (764 high quality bases) assembled on 2005-12-04

> BS06696.5prime
GAAGTTATCAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTA
AGCTCCAGTTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTG
CTTTTCTCGCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAA
ATACTCGCGGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGG
CGGAGCACCATCATCATCATGATCATGACCACGATCATGGACACCACCAC
CACGGGCACGATCATGATCATGACCACGACCACGGGCATGATCATGGACA
CCATCATCACGGGCACGATCATGATCATGACCACGACCACGGACACCATC
ATCACGGGCACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATG
AGCACCATTTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGC
TCCCTTCGTGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGA
AGCCGCGTCTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGT
GATGCCTTTCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGG
AGAACACGGCCACGATCACGGCCATGATCACCATCATCATCATGATGGCG
AGGAGCATGAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTC
CTTGGAGGAATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCT
AAAGGGCGGTCATGGAGGACACGGCCACAGCCATGGAGCACCAAAGCCAA
AACCAGTGCCTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGAT
GGAGACAAACCGGGCAAAGCAGCCAAGATCAAGTCCA

BS06696.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10449-PA 1350 Catsup-RA 1..847 17..863 4235 100 Plus
CG15022-PA 888 CG15022-RA 87..113 610..636 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-RA 1698 CG10449-RA 85..955 17..887 4310 99.8 Plus
Catsup-RA 1698 CG10449-RA 273..363 256..352 250 84.5 Plus
Catsup-RA 1698 CG10449-RA 324..420 205..295 250 84.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19042379..19042871 395..887 2405 99.2 Plus
2L 23513712 2L 19041946..19042324 17..395 1895 100 Plus
2L 23513712 2L 19042162..19042224 290..352 240 92.1 Plus
2L 23513712 2L 19042219..19042281 233..295 240 92.1 Plus
Blast to na_te.dros performed on 2015-02-10 21:03:40 has no hits.

BS06696.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:17 Download gff for BS06696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10449-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:11 Download gff for BS06696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10449-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:39 Download gff for BS06696.5prime
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 85..954 17..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:32 Download gff for BS06696.5prime
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 85..954 17..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:32 Download gff for BS06696.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19041946..19042324 17..395 100 -> Plus
2L 19042380..19042870 396..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:39 Download gff for BS06696.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19041946..19042324 17..395 100 -> Plus
arm_2L 19042380..19042870 396..886 99   Plus

BS06696.complete Sequence

1382 bp (1382 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635592

> BS06696.complete
GAAGTTATCAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTA
AGCTCCAGTTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTG
CTTTTCTCGCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAA
ATACTCGCGGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGG
CGGAGCACCATCATCATCATGATCATGACCACGATCATGGACACCACCAC
CACGGGCACGATCATGATCATGACCACGACCACGGGCATGATCATGGACA
CCATCATCACGGGCACGATCATGATCATGACCACGACCACGGACACCATC
ATCACGGGCACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATG
AGCACCATTTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGC
TCCCTTCGTGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGA
AGCCGCGTCTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGT
GATGCCTTTCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGG
AGAACACGGCCACGATCACGGCCATGATCACCATCATCATCATGATGGCG
AGGAGCATGAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTC
CTTGGAGGAATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCT
AAAGGGCGGTCATGGAGGACACGGCCACAGCCATGGAGCACCAAAGCCAA
AACCAGTGCCTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGAT
GGAGACAAACCGGCAAAGCCAGCCAAGATCAAGTCCAAGAAACCAGAAGC
GGAGCCAGAAGGCGAAGTGGAGATTTCCGGCTACTTGAATTTGGCGGCGG
ACTTTGCTCACAACTTCACCGATGGCCTGGCCATCGGCGCCTCCTATTTG
GCGGGCAACAGCATTGGCATTGTGACCACTATCACTATTCTGCTGCACGA
AGTGCCCCATGAGATTGGTGACTTTGCCATTCTTATAAAGTCTGGCTGTT
CCAGGCGAAAGGCAATGCTTCTGCAGCTCGTCACAGCGCTCGGAGCTTTG
GCGGGCACAGCGCTAGCTCTTCTGGGAGCTGGAGGCGGGGACGGATCGGC
CCCATGGGTCTTGCCCTTCACAGCCGGCGGTTTTATTTACATCGCAACAG
TGAGTGTCCTGCCGGAGCTGCTTGAGGAGTCTACGAAACTGAAACAGTCG
CTGAAGGAAATCTTTGCGCTGCTAACCGGCGTAGCCCTAATGATCGTTAT
CGCCAAGTTCGAGTAAAAGCTTTCTAGACCAT

BS06696.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-RA 1350 CG10449-PA 1..1350 17..1366 6750 100 Plus
Catsup-RA 1350 CG10449-PA 217..279 290..352 240 92.1 Plus
Catsup-RA 1350 CG10449-PA 274..336 233..295 240 92.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-RA 1698 CG10449-RA 85..1434 17..1366 6750 100 Plus
Catsup-RA 1698 CG10449-RA 301..363 290..352 240 92.1 Plus
Catsup-RA 1698 CG10449-RA 358..420 233..295 240 92.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19042379..19043350 395..1366 4860 100 Plus
2L 23513712 2L 19041946..19042324 17..395 1895 100 Plus
2L 23513712 2L 19042162..19042224 290..352 240 92.1 Plus
2L 23513712 2L 19042219..19042281 233..295 240 92.1 Plus
Blast to na_te.dros performed on 2014-11-28 00:44:53 has no hits.

BS06696.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:54 Download gff for BS06696.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 1..1350 17..1366 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:43 Download gff for BS06696.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 233..1582 17..1366 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:46 Download gff for BS06696.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 85..1432 17..1364 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:54 Download gff for BS06696.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 233..1582 17..1366 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:57 Download gff for BS06696.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 85..1432 17..1364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:57 Download gff for BS06696.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19041946..19042324 17..395 100 -> Plus
2L 19042380..19043348 396..1364 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:46 Download gff for BS06696.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19041946..19042324 17..395 100 -> Plus
arm_2L 19042380..19043348 396..1364 100   Plus

BS06696.pep Sequence

Translation from 16 to 1365

> BS06696.pep
MAKQVADYQCSKLQLYQKLALVVILGAVLFSLPALCAGQGNPSFKYSREA
NENFDPQKAPRAEHHHHHDHDHDHGHHHHGHDHDHDHDHGHDHGHHHHGH
DHDHDHDHGHHHHGHDERHTKAKPDLDMSTIWLHSIGSTLLISAAPFVLL
YIIPLDNSEAMKPRLKVLLAFASGGLLGDAFLHLIPHATHPHSHGEHGHD
HGHDHHHHHDGEEHEHGHSHDMSIGLWVLGGIIAFLSVEKLVRILKGGHG
GHGHSHGAPKPKPVPAKKKSSDKEDSGDGDKPAKPAKIKSKKPEAEPEGE
VEISGYLNLAADFAHNFTDGLAIGASYLAGNSIGIVTTITILLHEVPHEI
GDFAILIKSGCSRRKAMLLQLVTALGALAGTALALLGAGGGDGSAPWVLP
FTAGGFIYIATVSVLPELLEESTKLKQSLKEIFALLTGVALMIVIAKFE*

BS06696.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-PA 449 CG10449-PA 1..449 1..449 2446 100 Plus
Zip99C-PJ 355 CG7816-PJ 34..349 130..445 461 34.9 Plus
Zip99C-PI 355 CG7816-PI 34..349 130..445 461 34.9 Plus
Zip99C-PH 355 CG7816-PH 34..349 130..445 461 34.9 Plus
Zip99C-PC 355 CG7816-PC 34..349 130..445 461 34.9 Plus