Clone Sequence Records
BS06696.3prime Sequence
920 bp (821 high quality bases) assembled on 2005-12-04
> BS06696.3prime
ATGGTCTAGAAAGCTTTTACTCGAACTTGGCGATAACGATCATTAGGGCT
ACGCCGGTTAGCAGCGCAAAGATTTCCTTCAGCGACTGTTTCAGTTTCGT
AGACTCCTCAAGCAGCTCCGGCAGGACACTCACTGTTGCGATGTAAATAA
AACCGCCGGCTGTGAAGGGCAAGACCCATGGGGCCGATCCGTCCCCGCCT
CCAGCTCCCAGAAGAGCTAGCGCTGTGCCCGCCAAAGCTCCGAGCGCTGT
GACGAGCTGCAGAAGCATTGCCTTTCGCCTGGAACAGCCAGACTTTATAA
GAATGGCAAAGTCACCAATCTCATGGGGCACTTCGTGCAGCAGAATAGTG
ATAGTGGTCACAATGCCAATGCTGTTGCCCGCCAAATAGGAGGCGCCGAT
GGCCAGGCCATCGGTGAAGTTGTGAGCAAAGTCCGCCGCCAAATTCAAGT
AGCCGGAAATCTCCACTTCGCCTTCTGGCTCCGCTTCTGGTTTCTTGGAC
TTGATCTTGGCTGGCTTTGCCGGTTTGTCTCCATCTCCGCTGTCTTCTTT
GTCAGAGGACTTTTTCTTAGCAGGCACTGGTTTTGGCTTTGGTGCTCCAT
GGCTGTGGCCGTGTCCTCCATGACCGCCCTTTAGAATGCGTACCAGTTTC
TCCACTGAAAGGAAGGCAATGATTCCTCCAAGGACCCACAGACCAATGCT
CATATCGTGGCTGTGACCATGTTCATGCTCCTCGCCATCATGATGATGAT
GGTGATCATGGCCGTGATCGTGGCCGTGTTCTCCATGACTGTGTGGATGC
GTGGCATGAGGAATCAAGTGCAGAAAGGCATCACCCAACAAACCGCCAGA
AGCAAAGGCCAGAAGCACTTTGAGACGCGGCTTCATCGCCTCACTGTTGT
CTAGGGGAATGATATACAGC
BS06696.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10449-PA | 1350 | Catsup-RA | 447..1350 | 920..17 | 4520 | 100 | Minus |
CG15022-PA | 888 | CG15022-RA | 87..113 | 773..747 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-RA | 1698 | CG10449-RA | 531..1434 | 920..17 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19042447..19043350 | 920..17 | 4520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:07:06 has no hits.
BS06696.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:16 Download gff for
BS06696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10449-PA | 447..1350 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:10 Download gff for
BS06696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10449-PA | 447..1350 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:13:17 Download gff for
BS06696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 531..1434 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:17 Download gff for
BS06696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 531..1434 | 17..920 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:17 Download gff for
BS06696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19042447..19043350 | 17..920 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:13:17 Download gff for
BS06696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19042447..19043350 | 17..920 | 100 | | Minus |
BS06696.5prime Sequence
887 bp (764 high quality bases) assembled on 2005-12-04
> BS06696.5prime
GAAGTTATCAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTA
AGCTCCAGTTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTG
CTTTTCTCGCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAA
ATACTCGCGGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGG
CGGAGCACCATCATCATCATGATCATGACCACGATCATGGACACCACCAC
CACGGGCACGATCATGATCATGACCACGACCACGGGCATGATCATGGACA
CCATCATCACGGGCACGATCATGATCATGACCACGACCACGGACACCATC
ATCACGGGCACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATG
AGCACCATTTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGC
TCCCTTCGTGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGA
AGCCGCGTCTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGT
GATGCCTTTCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGG
AGAACACGGCCACGATCACGGCCATGATCACCATCATCATCATGATGGCG
AGGAGCATGAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTC
CTTGGAGGAATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCT
AAAGGGCGGTCATGGAGGACACGGCCACAGCCATGGAGCACCAAAGCCAA
AACCAGTGCCTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGAT
GGAGACAAACCGGGCAAAGCAGCCAAGATCAAGTCCA
BS06696.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10449-PA | 1350 | Catsup-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
CG15022-PA | 888 | CG15022-RA | 87..113 | 610..636 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-RA | 1698 | CG10449-RA | 85..955 | 17..887 | 4310 | 99.8 | Plus |
Catsup-RA | 1698 | CG10449-RA | 273..363 | 256..352 | 250 | 84.5 | Plus |
Catsup-RA | 1698 | CG10449-RA | 324..420 | 205..295 | 250 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19042379..19042871 | 395..887 | 2405 | 99.2 | Plus |
2L | 23513712 | 2L | 19041946..19042324 | 17..395 | 1895 | 100 | Plus |
2L | 23513712 | 2L | 19042162..19042224 | 290..352 | 240 | 92.1 | Plus |
2L | 23513712 | 2L | 19042219..19042281 | 233..295 | 240 | 92.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:03:40 has no hits.
BS06696.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:17 Download gff for
BS06696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10449-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:11 Download gff for
BS06696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10449-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:39 Download gff for
BS06696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 85..954 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:32 Download gff for
BS06696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 85..954 | 17..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:32 Download gff for
BS06696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19041946..19042324 | 17..395 | 100 | -> | Plus |
2L | 19042380..19042870 | 396..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:39 Download gff for
BS06696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19041946..19042324 | 17..395 | 100 | -> | Plus |
arm_2L | 19042380..19042870 | 396..886 | 99 | | Plus |
BS06696.complete Sequence
1382 bp (1382 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635592
> BS06696.complete
GAAGTTATCAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTA
AGCTCCAGTTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTG
CTTTTCTCGCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAA
ATACTCGCGGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGG
CGGAGCACCATCATCATCATGATCATGACCACGATCATGGACACCACCAC
CACGGGCACGATCATGATCATGACCACGACCACGGGCATGATCATGGACA
CCATCATCACGGGCACGATCATGATCATGACCACGACCACGGACACCATC
ATCACGGGCACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATG
AGCACCATTTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGC
TCCCTTCGTGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGA
AGCCGCGTCTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGT
GATGCCTTTCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGG
AGAACACGGCCACGATCACGGCCATGATCACCATCATCATCATGATGGCG
AGGAGCATGAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTC
CTTGGAGGAATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCT
AAAGGGCGGTCATGGAGGACACGGCCACAGCCATGGAGCACCAAAGCCAA
AACCAGTGCCTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGAT
GGAGACAAACCGGCAAAGCCAGCCAAGATCAAGTCCAAGAAACCAGAAGC
GGAGCCAGAAGGCGAAGTGGAGATTTCCGGCTACTTGAATTTGGCGGCGG
ACTTTGCTCACAACTTCACCGATGGCCTGGCCATCGGCGCCTCCTATTTG
GCGGGCAACAGCATTGGCATTGTGACCACTATCACTATTCTGCTGCACGA
AGTGCCCCATGAGATTGGTGACTTTGCCATTCTTATAAAGTCTGGCTGTT
CCAGGCGAAAGGCAATGCTTCTGCAGCTCGTCACAGCGCTCGGAGCTTTG
GCGGGCACAGCGCTAGCTCTTCTGGGAGCTGGAGGCGGGGACGGATCGGC
CCCATGGGTCTTGCCCTTCACAGCCGGCGGTTTTATTTACATCGCAACAG
TGAGTGTCCTGCCGGAGCTGCTTGAGGAGTCTACGAAACTGAAACAGTCG
CTGAAGGAAATCTTTGCGCTGCTAACCGGCGTAGCCCTAATGATCGTTAT
CGCCAAGTTCGAGTAAAAGCTTTCTAGACCAT
BS06696.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-RA | 1350 | CG10449-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Catsup-RA | 1350 | CG10449-PA | 217..279 | 290..352 | 240 | 92.1 | Plus |
Catsup-RA | 1350 | CG10449-PA | 274..336 | 233..295 | 240 | 92.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-RA | 1698 | CG10449-RA | 85..1434 | 17..1366 | 6750 | 100 | Plus |
Catsup-RA | 1698 | CG10449-RA | 301..363 | 290..352 | 240 | 92.1 | Plus |
Catsup-RA | 1698 | CG10449-RA | 358..420 | 233..295 | 240 | 92.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19042379..19043350 | 395..1366 | 4860 | 100 | Plus |
2L | 23513712 | 2L | 19041946..19042324 | 17..395 | 1895 | 100 | Plus |
2L | 23513712 | 2L | 19042162..19042224 | 290..352 | 240 | 92.1 | Plus |
2L | 23513712 | 2L | 19042219..19042281 | 233..295 | 240 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:44:53 has no hits.
BS06696.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:54 Download gff for
BS06696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:43 Download gff for
BS06696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 233..1582 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:46 Download gff for
BS06696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 85..1432 | 17..1364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:54 Download gff for
BS06696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 233..1582 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:57 Download gff for
BS06696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 85..1432 | 17..1364 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:57 Download gff for
BS06696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19041946..19042324 | 17..395 | 100 | -> | Plus |
2L | 19042380..19043348 | 396..1364 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:46 Download gff for
BS06696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19041946..19042324 | 17..395 | 100 | -> | Plus |
arm_2L | 19042380..19043348 | 396..1364 | 100 | | Plus |
BS06696.pep Sequence
Translation from 16 to 1365
> BS06696.pep
MAKQVADYQCSKLQLYQKLALVVILGAVLFSLPALCAGQGNPSFKYSREA
NENFDPQKAPRAEHHHHHDHDHDHGHHHHGHDHDHDHDHGHDHGHHHHGH
DHDHDHDHGHHHHGHDERHTKAKPDLDMSTIWLHSIGSTLLISAAPFVLL
YIIPLDNSEAMKPRLKVLLAFASGGLLGDAFLHLIPHATHPHSHGEHGHD
HGHDHHHHHDGEEHEHGHSHDMSIGLWVLGGIIAFLSVEKLVRILKGGHG
GHGHSHGAPKPKPVPAKKKSSDKEDSGDGDKPAKPAKIKSKKPEAEPEGE
VEISGYLNLAADFAHNFTDGLAIGASYLAGNSIGIVTTITILLHEVPHEI
GDFAILIKSGCSRRKAMLLQLVTALGALAGTALALLGAGGGDGSAPWVLP
FTAGGFIYIATVSVLPELLEESTKLKQSLKEIFALLTGVALMIVIAKFE*
BS06696.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-PA | 449 | CG10449-PA | 1..449 | 1..449 | 2446 | 100 | Plus |
Zip99C-PJ | 355 | CG7816-PJ | 34..349 | 130..445 | 461 | 34.9 | Plus |
Zip99C-PI | 355 | CG7816-PI | 34..349 | 130..445 | 461 | 34.9 | Plus |
Zip99C-PH | 355 | CG7816-PH | 34..349 | 130..445 | 461 | 34.9 | Plus |
Zip99C-PC | 355 | CG7816-PC | 34..349 | 130..445 | 461 | 34.9 | Plus |