Clone Sequence Records
BS06703.3prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-04
> BS06703.3prime
ATGGTCTAGAAAGCTTTCAAAAGCCCTCACCAACCGGCTTGATTATGAGC
TCCTTTATCTGGACAGTTGGGGGCGTCTGGATGCAGTAGGTCACCGCATC
GGCTATATCCTCCGATCGCAGCATGGGCATGCCTGTGGGTTGCTCCCAGG
ATCCGGCTTCGAAAATTTCAGTGGCCACTACACCAGGACTGATGCTCGTG
ATCTTTGTTTGAGTGCCCTTCTTGATGAACTCCTGACGCAGGATTTCGGT
CAAGGCGGTGATCGCGTGTTTGGAGGGCGCGTACATGTTCAGGCTGAAGC
CCTCCACGGCCGGAACGGAGTGGCCTACCACACTATTGATGACTACCACA
TGACCGTCGTTTACCTTGCGGCGCTGCAGCGATAGGAACCACTGGCGGGT
GCACCAGGTCACTCCCAACACATTCACGTCCAGAATGGCACGCACATCAG
CGGAATTTTCCGGGTCCGTGATGTTCATTTGACGTATGATCCCGGCGTTA
TTGACAAGCACGTCGGCACCACCCAGGGTGCGATCGATCCAGGCGAAGGT
ATCGATGACCTGCTGTTCATTGCTGACATCACAGGGGCGGGTGTGGAAGC
GAGCAGCCTGATCGGCGGGCAGGGAGGATTTGATGTCCTGGAGGACCTTC
TCTCTCCTGGCCAGGCCCACCACTACCATTCCCTTGGCCACCAGATCGCG
GCAGCAGGCTGCTCCGATTCCGGCGCTGGCACCAGTGACTACGGCAACGC
GATTCAACCAGCGGTTCATGTCGACTGATAACT
BS06703.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-PA | 753 | CG3301-RA | 1..753 | 769..17 | 3765 | 100 | Minus |
CG3301-PB | 753 | CG3301-RB | 1..753 | 769..17 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-RC | 814 | CG3301-RC | 38..792 | 770..16 | 3775 | 100 | Minus |
CG3301-RB | 1101 | CG3301-RB | 38..792 | 770..16 | 3775 | 100 | Minus |
CG3301-RA | 1006 | CG3301-RA | 38..792 | 770..16 | 3775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21275639..21276212 | 197..770 | 2870 | 100 | Plus |
3R | 32079331 | 3R | 21275400..21275581 | 16..197 | 910 | 100 | Plus |
X | 23542271 | X | 11764207..11764466 | 495..754 | 265 | 73.5 | Plus |
3R | 32079331 | 3R | 5849343..5849434 | 127..36 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:56:09 has no hits.
BS06703.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:22 Download gff for
BS06703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-PB | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:17 Download gff for
BS06703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-PB | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:46 Download gff for
BS06703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 38..792 | 16..770 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:59 Download gff for
BS06703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 38..792 | 16..770 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:59 Download gff for
BS06703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21275400..21275580 | 16..196 | 100 | <- | Plus |
3R | 21275639..21276212 | 197..770 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:46 Download gff for
BS06703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17101122..17101302 | 16..196 | 100 | <- | Plus |
arm_3R | 17101361..17101934 | 197..770 | 100 | | Plus |
BS06703.5prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-04
> BS06703.5prime
GAAGTTATCAGTCGACATGAACCGCTGGTTGAATCGCGTTGCCGTAGTCA
CTGGTGCCAGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGTGGCC
AAGGGAATGGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCCAGGA
CATCAAATCCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACCCGCC
CCTGTGATGTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTGGATC
GATCGCACCCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGATCAT
ACGTCAAATGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGTGCCA
TTCTGGACGTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTGGTTC
CTATCGCTGCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCATCAA
TAGTGTGGTAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTGAACA
TGTACGCGCCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCTGCGT
CAGGAGTTCATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCAGTCC
TGGTGTAGTGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAACCCA
CAGGCATGCCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGACCTAC
TGCATCCAGACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCAAGCC
GGTTGGTGAGGGCTTTTGAAAGCTTTCTAGACC
BS06703.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-PA | 753 | CG3301-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
CG3301-PB | 753 | CG3301-RB | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-RC | 814 | CG3301-RC | 38..792 | 16..770 | 3775 | 100 | Plus |
CG3301-RB | 1101 | CG3301-RB | 38..792 | 16..770 | 3775 | 100 | Plus |
CG3301-RA | 1006 | CG3301-RA | 38..792 | 16..770 | 3775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21275639..21276212 | 589..16 | 2870 | 100 | Minus |
3R | 32079331 | 3R | 21275400..21275581 | 770..589 | 910 | 100 | Minus |
X | 23542271 | X | 11764207..11764466 | 291..32 | 265 | 73.5 | Minus |
3R | 32079331 | 3R | 5849343..5849434 | 659..750 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:10:23 has no hits.
BS06703.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:23 Download gff for
BS06703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-PB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:18 Download gff for
BS06703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-PB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:24 Download gff for
BS06703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 38..792 | 16..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:48 Download gff for
BS06703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 38..792 | 16..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:48 Download gff for
BS06703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21275400..21275580 | 590..770 | 100 | <- | Minus |
3R | 21275639..21276212 | 16..589 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:24 Download gff for
BS06703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17101122..17101302 | 590..770 | 100 | <- | Minus |
arm_3R | 17101361..17101934 | 16..589 | 100 | | Minus |
BS06703.complete Sequence
785 bp (785 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635593
> BS06703.complete
GAAGTTATCAGTCGACATGAACCGCTGGTTGAATCGCGTTGCCGTAGTCA
CTGGTGCCAGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGTGGCC
AAGGGAATGGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCCAGGA
CATCAAATCCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACCCGCC
CCTGTGATGTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTGGATC
GATCGCACCCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGATCAT
ACGTCAAATGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGTGCCA
TTCTGGACGTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTGGTTC
CTATCGCTGCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCATCAA
TAGTGTGGTAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTGAACA
TGTACGCGCCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCTGCGT
CAGGAGTTCATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCAGTCC
TGGTGTAGTGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAACCCA
CAGGCATGCCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGACCTAC
TGCATCCAGACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCAAGCC
GGTTGGTGAGGGCTTTTGAAAGCTTTCTAGACCAT
BS06703.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-RC | 753 | CG3301-PC | 1..753 | 17..769 | 3765 | 100 | Plus |
CG3301-RB | 753 | CG3301-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
CG3301-RA | 753 | CG3301-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-RC | 814 | CG3301-RC | 38..792 | 16..770 | 3775 | 100 | Plus |
CG3301-RB | 1101 | CG3301-RB | 38..792 | 16..770 | 3775 | 100 | Plus |
CG3301-RA | 1006 | CG3301-RA | 38..792 | 16..770 | 3775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21275639..21276212 | 589..16 | 2870 | 100 | Minus |
3R | 32079331 | 3R | 21275400..21275581 | 770..589 | 910 | 100 | Minus |
X | 23542271 | X | 11764207..11764466 | 291..32 | 265 | 73.5 | Minus |
3R | 32079331 | 3R | 5849343..5849434 | 659..750 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:17:40 has no hits.
BS06703.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:08 Download gff for
BS06703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:05 Download gff for
BS06703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RB | 40..794 | 16..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:47 Download gff for
BS06703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 39..790 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:09 Download gff for
BS06703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RB | 40..794 | 16..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:24 Download gff for
BS06703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3301-RA | 39..790 | 17..768 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:24 Download gff for
BS06703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21275402..21275580 | 590..768 | 100 | <- | Minus |
3R | 21275639..21276211 | 17..589 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:47 Download gff for
BS06703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17101124..17101302 | 590..768 | 100 | <- | Minus |
arm_3R | 17101361..17101933 | 17..589 | 100 | | Minus |
BS06703.pep Sequence
Translation from 16 to 768
> BS06703.pep
MNRWLNRVAVVTGASAGIGAACCRDLVAKGMVVVGLARREKVLQDIKSSL
PADQAARFHTRPCDVSNEQQVIDTFAWIDRTLGGADVLVNNAGIIRQMNI
TDPENSADVRAILDVNVLGVTWCTRQWFLSLQRRKVNDGHVVVINSVVGH
SVPAVEGFSLNMYAPSKHAITALTEILRQEFIKKGTQTKITSISPGVVAT
EIFEAGSWEQPTGMPMLRSEDIADAVTYCIQTPPTVQIKELIIKPVGEGF
*
BS06703.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3301-PC | 250 | CG3301-PC | 1..250 | 1..250 | 1285 | 100 | Plus |
CG3301-PB | 250 | CG3301-PB | 1..250 | 1..250 | 1285 | 100 | Plus |
CG3301-PA | 250 | CG3301-PA | 1..250 | 1..250 | 1285 | 100 | Plus |
CG9360-PA | 251 | CG9360-PA | 1..249 | 1..248 | 888 | 69.5 | Plus |
CG9150-PB | 251 | CG9150-PB | 1..251 | 1..250 | 595 | 48.4 | Plus |