Clone BS06703 Report

Search the DGRC for BS06703

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG3301-RA
Protein status:BS06703.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06703.3prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-04

> BS06703.3prime
ATGGTCTAGAAAGCTTTCAAAAGCCCTCACCAACCGGCTTGATTATGAGC
TCCTTTATCTGGACAGTTGGGGGCGTCTGGATGCAGTAGGTCACCGCATC
GGCTATATCCTCCGATCGCAGCATGGGCATGCCTGTGGGTTGCTCCCAGG
ATCCGGCTTCGAAAATTTCAGTGGCCACTACACCAGGACTGATGCTCGTG
ATCTTTGTTTGAGTGCCCTTCTTGATGAACTCCTGACGCAGGATTTCGGT
CAAGGCGGTGATCGCGTGTTTGGAGGGCGCGTACATGTTCAGGCTGAAGC
CCTCCACGGCCGGAACGGAGTGGCCTACCACACTATTGATGACTACCACA
TGACCGTCGTTTACCTTGCGGCGCTGCAGCGATAGGAACCACTGGCGGGT
GCACCAGGTCACTCCCAACACATTCACGTCCAGAATGGCACGCACATCAG
CGGAATTTTCCGGGTCCGTGATGTTCATTTGACGTATGATCCCGGCGTTA
TTGACAAGCACGTCGGCACCACCCAGGGTGCGATCGATCCAGGCGAAGGT
ATCGATGACCTGCTGTTCATTGCTGACATCACAGGGGCGGGTGTGGAAGC
GAGCAGCCTGATCGGCGGGCAGGGAGGATTTGATGTCCTGGAGGACCTTC
TCTCTCCTGGCCAGGCCCACCACTACCATTCCCTTGGCCACCAGATCGCG
GCAGCAGGCTGCTCCGATTCCGGCGCTGGCACCAGTGACTACGGCAACGC
GATTCAACCAGCGGTTCATGTCGACTGATAACT

BS06703.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-PA 753 CG3301-RA 1..753 769..17 3765 100 Minus
CG3301-PB 753 CG3301-RB 1..753 769..17 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-RC 814 CG3301-RC 38..792 770..16 3775 100 Minus
CG3301-RB 1101 CG3301-RB 38..792 770..16 3775 100 Minus
CG3301-RA 1006 CG3301-RA 38..792 770..16 3775 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21275639..21276212 197..770 2870 100 Plus
3R 32079331 3R 21275400..21275581 16..197 910 100 Plus
X 23542271 X 11764207..11764466 495..754 265 73.5 Plus
3R 32079331 3R 5849343..5849434 127..36 190 80.4 Minus
Blast to na_te.dros performed on 2015-02-11 16:56:09 has no hits.

BS06703.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:22 Download gff for BS06703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-PB 1..753 17..769 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:17 Download gff for BS06703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-PB 1..753 17..769 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:46 Download gff for BS06703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 38..792 16..770 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:59 Download gff for BS06703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 38..792 16..770 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:59 Download gff for BS06703.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21275400..21275580 16..196 100 <- Plus
3R 21275639..21276212 197..770 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:46 Download gff for BS06703.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17101122..17101302 16..196 100 <- Plus
arm_3R 17101361..17101934 197..770 100   Plus

BS06703.5prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-04

> BS06703.5prime
GAAGTTATCAGTCGACATGAACCGCTGGTTGAATCGCGTTGCCGTAGTCA
CTGGTGCCAGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGTGGCC
AAGGGAATGGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCCAGGA
CATCAAATCCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACCCGCC
CCTGTGATGTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTGGATC
GATCGCACCCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGATCAT
ACGTCAAATGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGTGCCA
TTCTGGACGTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTGGTTC
CTATCGCTGCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCATCAA
TAGTGTGGTAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTGAACA
TGTACGCGCCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCTGCGT
CAGGAGTTCATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCAGTCC
TGGTGTAGTGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAACCCA
CAGGCATGCCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGACCTAC
TGCATCCAGACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCAAGCC
GGTTGGTGAGGGCTTTTGAAAGCTTTCTAGACC

BS06703.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-PA 753 CG3301-RA 1..753 17..769 3765 100 Plus
CG3301-PB 753 CG3301-RB 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-RC 814 CG3301-RC 38..792 16..770 3775 100 Plus
CG3301-RB 1101 CG3301-RB 38..792 16..770 3775 100 Plus
CG3301-RA 1006 CG3301-RA 38..792 16..770 3775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21275639..21276212 589..16 2870 100 Minus
3R 32079331 3R 21275400..21275581 770..589 910 100 Minus
X 23542271 X 11764207..11764466 291..32 265 73.5 Minus
3R 32079331 3R 5849343..5849434 659..750 190 80.4 Plus
Blast to na_te.dros performed on 2015-02-12 19:10:23 has no hits.

BS06703.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:23 Download gff for BS06703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-PB 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:18 Download gff for BS06703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-PB 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:24 Download gff for BS06703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 38..792 16..770 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:48 Download gff for BS06703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 38..792 16..770 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:48 Download gff for BS06703.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21275400..21275580 590..770 100 <- Minus
3R 21275639..21276212 16..589 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:24 Download gff for BS06703.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17101122..17101302 590..770 100 <- Minus
arm_3R 17101361..17101934 16..589 100   Minus

BS06703.complete Sequence

785 bp (785 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635593

> BS06703.complete
GAAGTTATCAGTCGACATGAACCGCTGGTTGAATCGCGTTGCCGTAGTCA
CTGGTGCCAGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGTGGCC
AAGGGAATGGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCCAGGA
CATCAAATCCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACCCGCC
CCTGTGATGTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTGGATC
GATCGCACCCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGATCAT
ACGTCAAATGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGTGCCA
TTCTGGACGTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTGGTTC
CTATCGCTGCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCATCAA
TAGTGTGGTAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTGAACA
TGTACGCGCCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCTGCGT
CAGGAGTTCATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCAGTCC
TGGTGTAGTGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAACCCA
CAGGCATGCCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGACCTAC
TGCATCCAGACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCAAGCC
GGTTGGTGAGGGCTTTTGAAAGCTTTCTAGACCAT

BS06703.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-RC 753 CG3301-PC 1..753 17..769 3765 100 Plus
CG3301-RB 753 CG3301-PB 1..753 17..769 3765 100 Plus
CG3301-RA 753 CG3301-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-RC 814 CG3301-RC 38..792 16..770 3775 100 Plus
CG3301-RB 1101 CG3301-RB 38..792 16..770 3775 100 Plus
CG3301-RA 1006 CG3301-RA 38..792 16..770 3775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21275639..21276212 589..16 2870 100 Minus
3R 32079331 3R 21275400..21275581 770..589 910 100 Minus
X 23542271 X 11764207..11764466 291..32 265 73.5 Minus
3R 32079331 3R 5849343..5849434 659..750 190 80.4 Plus
Blast to na_te.dros performed on 2014-11-28 00:17:40 has no hits.

BS06703.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:08 Download gff for BS06703.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RB 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:05 Download gff for BS06703.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RB 40..794 16..770 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:47 Download gff for BS06703.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 39..790 17..768 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:09 Download gff for BS06703.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RB 40..794 16..770 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:24 Download gff for BS06703.complete
Subject Subject Range Query Range Percent Splice Strand
CG3301-RA 39..790 17..768 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:24 Download gff for BS06703.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21275402..21275580 590..768 100 <- Minus
3R 21275639..21276211 17..589 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:47 Download gff for BS06703.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17101124..17101302 590..768 100 <- Minus
arm_3R 17101361..17101933 17..589 100   Minus

BS06703.pep Sequence

Translation from 16 to 768

> BS06703.pep
MNRWLNRVAVVTGASAGIGAACCRDLVAKGMVVVGLARREKVLQDIKSSL
PADQAARFHTRPCDVSNEQQVIDTFAWIDRTLGGADVLVNNAGIIRQMNI
TDPENSADVRAILDVNVLGVTWCTRQWFLSLQRRKVNDGHVVVINSVVGH
SVPAVEGFSLNMYAPSKHAITALTEILRQEFIKKGTQTKITSISPGVVAT
EIFEAGSWEQPTGMPMLRSEDIADAVTYCIQTPPTVQIKELIIKPVGEGF
*

BS06703.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3301-PC 250 CG3301-PC 1..250 1..250 1285 100 Plus
CG3301-PB 250 CG3301-PB 1..250 1..250 1285 100 Plus
CG3301-PA 250 CG3301-PA 1..250 1..250 1285 100 Plus
CG9360-PA 251 CG9360-PA 1..249 1..248 888 69.5 Plus
CG9150-PB 251 CG9150-PB 1..251 1..250 595 48.4 Plus