Clone BS06706 Report

Search the DGRC for BS06706

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG11170-RB
Protein status:BS06706.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06706.3prime Sequence

909 bp (818 high quality bases) assembled on 2005-12-04

> BS06706.3prime
ATGGTCTAGAAAGCTTTTAATTATTGCTTTCCAGCACTTTTATTAGGTCG
TAAGCATGTTGGAAACGCATATCACAGAAGTCATCTTGGCATGCTACACA
CTGCTCCAGGAGCAGCTGCAGCTTTTCGTTGTCCAAATTCTTAAGCAAGT
AATCCCTTAGCAAAAGGCACGCCTGGTAGATATTGGCATCCAGCTGATGG
CCGGAGCAGAATGCAGAGACATCAAATGTGAATCCCTCGCCGGTCAGCGG
CTCGTACTTTTCGGCATGTCCTGCTGCGAACGAAGCGTCCACCAGGACCA
CGGAGTCCAAATCAATGAGGTACACCTTCTTGGTGTCTTCGTCGTAAGCC
AAATTATCGGCCGTGAAATCGGTTAAGATAATGCGAAAGTCCGCGAATCC
AAAAGTCAGCTTGAGGGAGAGCTGGATCAACTGGAGAGCCAGCTCCACAC
GCAAACCTTCTTCAGCATCGACGTAATGAGCTAAAGTACGTCCTGCATTG
GATTGAAAATGTGTTAGTCCGCAGGAGGCGTAGGTGGTAGGCACTGGAAA
TCCCTGCAGATGCAGTTCCTGCATAAGCAGCGGACTAACGTAGTACATCA
TGTAGAACCACACACTGGCGGCAGCATGTCCACGCTGCTCCAAGTACGAA
ACAAAGCGGGGTTCCCTTGCCAGAGTTCGGCAGAGATGAAAACCACCAGG
TCGCTCCTCTAGTTCATAGAAATCTTTTTTCACATTTTTTATCTGATTAC
TCTGTGCATCAATGATTTTTCTTTTGGCCACCAGCTGGACTTCCTGATCC
CGGTCTTTTAGCCTTAGAAAGTAAATCGCTCGGCGATCAACGAGCAACGA
AATGGCTTTCACAAGTCTACTCCAATCCGAGGGCTCTGCAATTTTCTGGA
AGATTCCCC

BS06706.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-PB 1047 CG11170-RB 159..1047 905..17 4445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-RD 1106 CG11170-RD 192..1085 909..16 4455 99.9 Minus
CG11170-RC 1135 CG11170-RC 221..1114 909..16 4455 99.9 Minus
CG11170-RB 1195 CG11170-RB 281..1174 909..16 4455 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22177440..22178333 16..909 4455 99.9 Plus
Blast to na_te.dros performed on 2015-02-01 08:27:51 has no hits.

BS06706.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:28 Download gff for BS06706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11170-PB 154..1047 17..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:26 Download gff for BS06706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11170-PB 154..1047 17..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:24:59 Download gff for BS06706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 280..1176 13..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:19 Download gff for BS06706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 280..1176 13..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:19 Download gff for BS06706.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22177438..22178333 13..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:24:59 Download gff for BS06706.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18064943..18065838 13..909 99   Plus

BS06706.5prime Sequence

916 bp (805 high quality bases) assembled on 2005-12-04

> BS06706.5prime
GAAGTTATCAGTCGACATGCACCTGTCACACGGCCAACTGAAAGTGGTGC
TCATTTTGGCCCTGCTGCAGGAGCTGCAGGTGAAGCCGCAGCGAGAGGTG
TTCCAGGAACTTTTCGAGAAGGATCTGCGCTTGTGTCCAGACTGTTTCGT
TGGACAGAGTGAGCCGTGCGGGGAAATCTTCCAGAAAATTGCAGAGCCCT
CGGATTGGAGTAGACTTGTGAAAGCCATTTCGTTGCTCGTTGATCGCCGA
GCGATTTACTTTCTAAGGCTAAAAGACCGGGATCAGGAAGTCCAGCTGGT
GGCCAAAAGAAAAATCATTGATGCACAGAGTAATCAGATAAAAAATGTGA
AAAAAGATTTCTATGAACTAGAGGAGCGACCTGGTGGTTTTCATCTCTGC
CGAACTCTGGCAAGGGAACCCCGCTTTGTTTCGTACTTGGAGCAGCGTGG
ACATGCTGCCGCCAGTGTGTGGTTCTACATGATGTACTACGTTAGTCCGC
TGCTTATGCAGGAACTGCATCTGCAGGGATTTCCAGTGCCTACCACCTAC
GCCTCCTGCGGACTAACACATTTTCAATCCAATGCAGGACGTACTTTAGC
TCATTACGTCGATGCTGAAGAAGGTTTGCGTGTGGAGCTGGCTCTCCAGT
TGATCCAGCTCTCCCTCAAGCTGACTTTTGGATTCGCGGACTTTCGCATT
ATCTTAACCGATTTCACGGCCGATAATTTGGCTTACGACGAAGACACCAA
GAAGGTGTACCTCATTGATTTGGACTCCGTGGTCCTGGTGGACGCTTCGT
TCGCAGCAGGACATGCCGAAAAGTACGAGCCGCTGACCGGCGAGGGATTC
ACATTTGATGTCTCTGCATTCTGCTCCGGCCATCAGCTGGATGCCATATC
TACCAGGCGTGCCTTT

BS06706.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-PB 1047 CG11170-RB 1..880 17..896 4400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-RD 1106 CG11170-RD 38..938 17..916 4480 99.9 Plus
CG11170-RC 1135 CG11170-RC 67..967 17..916 4480 99.9 Plus
CG11170-RB 1195 CG11170-RB 127..1027 17..916 4480 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22177587..22178487 916..17 4455 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 20:59:25 has no hits.

BS06706.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:29 Download gff for BS06706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11170-PB 1..901 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:27 Download gff for BS06706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11170-PB 1..901 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:20 Download gff for BS06706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 124..1027 11..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:27 Download gff for BS06706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 124..1027 11..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:27 Download gff for BS06706.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22177587..22178490 11..916 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:20 Download gff for BS06706.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18065092..18065995 11..916 99   Minus

BS06706.complete Sequence

1079 bp (1079 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635594

> BS06706.complete
GAAGTTATCAGTCGACATGCACCTGTCACACGGCCAACTGAAAGTGGTGC
TCATTTTGGCCCTGCTGCAGGAGCTGCAGGTGAAGCCGCAGCGAGAGGTG
TTCCAGGAACTTTTCGAGAAGGATCTGCGCTTGTGTCCAGACTGTTTCGT
TGGACAGAGTGAGCCGTGCGGGGAAATCTTCCAGAAAATTGCAGAGCCCT
CGGATTGGAGTAGACTTGTGAAAGCCATTTCGTTGCTCGTTGATCGCCGA
GCGATTTACTTTCTAAGGCTAAAAGACCGGGATCAGGAAGTCCAGCTGGT
GGCCAAAAGAAAAATCATTGATGCACAGAGTAATCAGATAAAAAATGTGA
AAAAAGATTTCTATGAACTAGAGGAGCGACCTGGTGGTTTTCATCTCTGC
CGAACTCTGGCAAGGGAACCCCGCTTTGTTTCGTACTTGGAGCAGCGTGG
ACATGCTGCCGCCAGTGTGTGGTTCTACATGATGTACTACGTTAGTCCGC
TGCTTATGCAGGAACTGCATCTGCAGGGATTTCCAGTGCCTACCACCTAC
GCCTCCTGCGGACTAACACATTTTCAATCCAATGCAGGACGTACTTTAGC
TCATTACGTCGATGCTGAAGAAGGTTTGCGTGTGGAGCTGGCTCTCCAGT
TGATCCAGCTCTCCCTCAAGCTGACTTTTGGATTCGCGGACTTTCGCATT
ATCTTAACCGATTTCACGGCCGATAATTTGGCTTACGACGAAGACACCAA
GAAGGTGTACCTCATTGATTTGGACTCCGTGGTCCTGGTGGACGCTTCGT
TCGCAGCAGGACATGCCGAAAAGTACGAGCCGCTGACCGGCGAGGGATTC
ACATTTGATGTCTCTGCATTCTGCTCCGGCCATCAGCTGGATGCCAATAT
CTACCAGGCGTGCCTTTTGCTAAGGGATTACTTGCTTAAGAATTTGGACA
ACGAAAAGCTGCAGCTGCTCCTGGAGCAGTGTGTAGCATGCCAAGATGAC
TTCTGTGATATGCGTTTCCAACATGCTTACGACCTAATAAAAGTGCTGGA
AAGCAATAATTAAAAGCTTTCTAGACCAT

BS06706.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-RD 1047 CG11170-PD 1..1047 17..1063 5235 100 Plus
CG11170-RC 1047 CG11170-PC 1..1047 17..1063 5235 100 Plus
CG11170-RB 1047 CG11170-PB 1..1047 17..1063 5235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-RD 1106 CG11170-RD 38..1085 17..1064 5240 100 Plus
CG11170-RC 1135 CG11170-RC 67..1114 17..1064 5240 100 Plus
CG11170-RB 1195 CG11170-RB 127..1174 17..1064 5240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22177440..22178487 1064..17 5240 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:48:31 has no hits.

BS06706.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:55 Download gff for BS06706.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 1..1047 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:44 Download gff for BS06706.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 77..1126 11..1063 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:38 Download gff for BS06706.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 127..1171 17..1061 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:55 Download gff for BS06706.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 77..1126 11..1063 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:38 Download gff for BS06706.complete
Subject Subject Range Query Range Percent Splice Strand
CG11170-RB 127..1171 17..1061 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:38 Download gff for BS06706.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22177443..22178487 17..1061 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:38 Download gff for BS06706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18064948..18065992 17..1061 100   Minus

BS06706.pep Sequence

Translation from 16 to 1062

> BS06706.pep
MHLSHGQLKVVLILALLQELQVKPQREVFQELFEKDLRLCPDCFVGQSEP
CGEIFQKIAEPSDWSRLVKAISLLVDRRAIYFLRLKDRDQEVQLVAKRKI
IDAQSNQIKNVKKDFYELEERPGGFHLCRTLAREPRFVSYLEQRGHAAAS
VWFYMMYYVSPLLMQELHLQGFPVPTTYASCGLTHFQSNAGRTLAHYVDA
EEGLRVELALQLIQLSLKLTFGFADFRIILTDFTADNLAYDEDTKKVYLI
DLDSVVLVDASFAAGHAEKYEPLTGEGFTFDVSAFCSGHQLDANIYQACL
LLRDYLLKNLDNEKLQLLLEQCVACQDDFCDMRFQHAYDLIKVLESNN*

BS06706.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11170-PD 348 CG11170-PD 1..348 1..348 1807 100 Plus
CG11170-PC 348 CG11170-PC 1..348 1..348 1807 100 Plus
CG11170-PB 348 CG11170-PB 1..348 1..348 1807 100 Plus