Clone Sequence Records
BS06706.3prime Sequence
909 bp (818 high quality bases) assembled on 2005-12-04
> BS06706.3prime
ATGGTCTAGAAAGCTTTTAATTATTGCTTTCCAGCACTTTTATTAGGTCG
TAAGCATGTTGGAAACGCATATCACAGAAGTCATCTTGGCATGCTACACA
CTGCTCCAGGAGCAGCTGCAGCTTTTCGTTGTCCAAATTCTTAAGCAAGT
AATCCCTTAGCAAAAGGCACGCCTGGTAGATATTGGCATCCAGCTGATGG
CCGGAGCAGAATGCAGAGACATCAAATGTGAATCCCTCGCCGGTCAGCGG
CTCGTACTTTTCGGCATGTCCTGCTGCGAACGAAGCGTCCACCAGGACCA
CGGAGTCCAAATCAATGAGGTACACCTTCTTGGTGTCTTCGTCGTAAGCC
AAATTATCGGCCGTGAAATCGGTTAAGATAATGCGAAAGTCCGCGAATCC
AAAAGTCAGCTTGAGGGAGAGCTGGATCAACTGGAGAGCCAGCTCCACAC
GCAAACCTTCTTCAGCATCGACGTAATGAGCTAAAGTACGTCCTGCATTG
GATTGAAAATGTGTTAGTCCGCAGGAGGCGTAGGTGGTAGGCACTGGAAA
TCCCTGCAGATGCAGTTCCTGCATAAGCAGCGGACTAACGTAGTACATCA
TGTAGAACCACACACTGGCGGCAGCATGTCCACGCTGCTCCAAGTACGAA
ACAAAGCGGGGTTCCCTTGCCAGAGTTCGGCAGAGATGAAAACCACCAGG
TCGCTCCTCTAGTTCATAGAAATCTTTTTTCACATTTTTTATCTGATTAC
TCTGTGCATCAATGATTTTTCTTTTGGCCACCAGCTGGACTTCCTGATCC
CGGTCTTTTAGCCTTAGAAAGTAAATCGCTCGGCGATCAACGAGCAACGA
AATGGCTTTCACAAGTCTACTCCAATCCGAGGGCTCTGCAATTTTCTGGA
AGATTCCCC
BS06706.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11170-PB | 1047 | CG11170-RB | 159..1047 | 905..17 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11170-RD | 1106 | CG11170-RD | 192..1085 | 909..16 | 4455 | 99.9 | Minus |
CG11170-RC | 1135 | CG11170-RC | 221..1114 | 909..16 | 4455 | 99.9 | Minus |
CG11170-RB | 1195 | CG11170-RB | 281..1174 | 909..16 | 4455 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22177440..22178333 | 16..909 | 4455 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:27:51 has no hits.
BS06706.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:28 Download gff for
BS06706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-PB | 154..1047 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:26 Download gff for
BS06706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-PB | 154..1047 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:24:59 Download gff for
BS06706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-RB | 280..1176 | 13..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:19 Download gff for
BS06706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-RB | 280..1176 | 13..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:19 Download gff for
BS06706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22177438..22178333 | 13..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:24:59 Download gff for
BS06706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18064943..18065838 | 13..909 | 99 | | Plus |
BS06706.5prime Sequence
916 bp (805 high quality bases) assembled on 2005-12-04
> BS06706.5prime
GAAGTTATCAGTCGACATGCACCTGTCACACGGCCAACTGAAAGTGGTGC
TCATTTTGGCCCTGCTGCAGGAGCTGCAGGTGAAGCCGCAGCGAGAGGTG
TTCCAGGAACTTTTCGAGAAGGATCTGCGCTTGTGTCCAGACTGTTTCGT
TGGACAGAGTGAGCCGTGCGGGGAAATCTTCCAGAAAATTGCAGAGCCCT
CGGATTGGAGTAGACTTGTGAAAGCCATTTCGTTGCTCGTTGATCGCCGA
GCGATTTACTTTCTAAGGCTAAAAGACCGGGATCAGGAAGTCCAGCTGGT
GGCCAAAAGAAAAATCATTGATGCACAGAGTAATCAGATAAAAAATGTGA
AAAAAGATTTCTATGAACTAGAGGAGCGACCTGGTGGTTTTCATCTCTGC
CGAACTCTGGCAAGGGAACCCCGCTTTGTTTCGTACTTGGAGCAGCGTGG
ACATGCTGCCGCCAGTGTGTGGTTCTACATGATGTACTACGTTAGTCCGC
TGCTTATGCAGGAACTGCATCTGCAGGGATTTCCAGTGCCTACCACCTAC
GCCTCCTGCGGACTAACACATTTTCAATCCAATGCAGGACGTACTTTAGC
TCATTACGTCGATGCTGAAGAAGGTTTGCGTGTGGAGCTGGCTCTCCAGT
TGATCCAGCTCTCCCTCAAGCTGACTTTTGGATTCGCGGACTTTCGCATT
ATCTTAACCGATTTCACGGCCGATAATTTGGCTTACGACGAAGACACCAA
GAAGGTGTACCTCATTGATTTGGACTCCGTGGTCCTGGTGGACGCTTCGT
TCGCAGCAGGACATGCCGAAAAGTACGAGCCGCTGACCGGCGAGGGATTC
ACATTTGATGTCTCTGCATTCTGCTCCGGCCATCAGCTGGATGCCATATC
TACCAGGCGTGCCTTT
BS06706.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11170-PB | 1047 | CG11170-RB | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11170-RD | 1106 | CG11170-RD | 38..938 | 17..916 | 4480 | 99.9 | Plus |
CG11170-RC | 1135 | CG11170-RC | 67..967 | 17..916 | 4480 | 99.9 | Plus |
CG11170-RB | 1195 | CG11170-RB | 127..1027 | 17..916 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22177587..22178487 | 916..17 | 4455 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:59:25 has no hits.
BS06706.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:29 Download gff for
BS06706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-PB | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:27 Download gff for
BS06706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-PB | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:20 Download gff for
BS06706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-RB | 124..1027 | 11..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:27 Download gff for
BS06706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-RB | 124..1027 | 11..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:27 Download gff for
BS06706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22177587..22178490 | 11..916 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:20 Download gff for
BS06706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18065092..18065995 | 11..916 | 99 | | Minus |
BS06706.complete Sequence
1079 bp (1079 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635594
> BS06706.complete
GAAGTTATCAGTCGACATGCACCTGTCACACGGCCAACTGAAAGTGGTGC
TCATTTTGGCCCTGCTGCAGGAGCTGCAGGTGAAGCCGCAGCGAGAGGTG
TTCCAGGAACTTTTCGAGAAGGATCTGCGCTTGTGTCCAGACTGTTTCGT
TGGACAGAGTGAGCCGTGCGGGGAAATCTTCCAGAAAATTGCAGAGCCCT
CGGATTGGAGTAGACTTGTGAAAGCCATTTCGTTGCTCGTTGATCGCCGA
GCGATTTACTTTCTAAGGCTAAAAGACCGGGATCAGGAAGTCCAGCTGGT
GGCCAAAAGAAAAATCATTGATGCACAGAGTAATCAGATAAAAAATGTGA
AAAAAGATTTCTATGAACTAGAGGAGCGACCTGGTGGTTTTCATCTCTGC
CGAACTCTGGCAAGGGAACCCCGCTTTGTTTCGTACTTGGAGCAGCGTGG
ACATGCTGCCGCCAGTGTGTGGTTCTACATGATGTACTACGTTAGTCCGC
TGCTTATGCAGGAACTGCATCTGCAGGGATTTCCAGTGCCTACCACCTAC
GCCTCCTGCGGACTAACACATTTTCAATCCAATGCAGGACGTACTTTAGC
TCATTACGTCGATGCTGAAGAAGGTTTGCGTGTGGAGCTGGCTCTCCAGT
TGATCCAGCTCTCCCTCAAGCTGACTTTTGGATTCGCGGACTTTCGCATT
ATCTTAACCGATTTCACGGCCGATAATTTGGCTTACGACGAAGACACCAA
GAAGGTGTACCTCATTGATTTGGACTCCGTGGTCCTGGTGGACGCTTCGT
TCGCAGCAGGACATGCCGAAAAGTACGAGCCGCTGACCGGCGAGGGATTC
ACATTTGATGTCTCTGCATTCTGCTCCGGCCATCAGCTGGATGCCAATAT
CTACCAGGCGTGCCTTTTGCTAAGGGATTACTTGCTTAAGAATTTGGACA
ACGAAAAGCTGCAGCTGCTCCTGGAGCAGTGTGTAGCATGCCAAGATGAC
TTCTGTGATATGCGTTTCCAACATGCTTACGACCTAATAAAAGTGCTGGA
AAGCAATAATTAAAAGCTTTCTAGACCAT
BS06706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11170-RD | 1047 | CG11170-PD | 1..1047 | 17..1063 | 5235 | 100 | Plus |
CG11170-RC | 1047 | CG11170-PC | 1..1047 | 17..1063 | 5235 | 100 | Plus |
CG11170-RB | 1047 | CG11170-PB | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11170-RD | 1106 | CG11170-RD | 38..1085 | 17..1064 | 5240 | 100 | Plus |
CG11170-RC | 1135 | CG11170-RC | 67..1114 | 17..1064 | 5240 | 100 | Plus |
CG11170-RB | 1195 | CG11170-RB | 127..1174 | 17..1064 | 5240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22177440..22178487 | 1064..17 | 5240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:48:31 has no hits.
BS06706.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:55 Download gff for
BS06706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-RB | 1..1047 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:44 Download gff for
BS06706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-RB | 77..1126 | 11..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:38 Download gff for
BS06706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-RB | 127..1171 | 17..1061 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:55 Download gff for
BS06706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-RB | 77..1126 | 11..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:38 Download gff for
BS06706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11170-RB | 127..1171 | 17..1061 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:38 Download gff for
BS06706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22177443..22178487 | 17..1061 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:38 Download gff for
BS06706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18064948..18065992 | 17..1061 | 100 | | Minus |
BS06706.pep Sequence
Translation from 16 to 1062
> BS06706.pep
MHLSHGQLKVVLILALLQELQVKPQREVFQELFEKDLRLCPDCFVGQSEP
CGEIFQKIAEPSDWSRLVKAISLLVDRRAIYFLRLKDRDQEVQLVAKRKI
IDAQSNQIKNVKKDFYELEERPGGFHLCRTLAREPRFVSYLEQRGHAAAS
VWFYMMYYVSPLLMQELHLQGFPVPTTYASCGLTHFQSNAGRTLAHYVDA
EEGLRVELALQLIQLSLKLTFGFADFRIILTDFTADNLAYDEDTKKVYLI
DLDSVVLVDASFAAGHAEKYEPLTGEGFTFDVSAFCSGHQLDANIYQACL
LLRDYLLKNLDNEKLQLLLEQCVACQDDFCDMRFQHAYDLIKVLESNN*
BS06706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11170-PD | 348 | CG11170-PD | 1..348 | 1..348 | 1807 | 100 | Plus |
CG11170-PC | 348 | CG11170-PC | 1..348 | 1..348 | 1807 | 100 | Plus |
CG11170-PB | 348 | CG11170-PB | 1..348 | 1..348 | 1807 | 100 | Plus |