Clone BS06715 Report

Search the DGRC for BS06715

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG6931-RA
Protein status:BS06715.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06715.3prime Sequence

903 bp (781 high quality bases) assembled on 2005-12-04

> BS06715.3prime
ATGGTCTAGAAAGCTTCTATTTATGATTTTGTTTGGTGCTGGTAGCCGTT
GCTTTTGCCACGCTTTTTGGTTTACCCCGAAAAATGTTCGGATCAATGAT
ATTGTACGGATGCTCGCAAGCGGGATTCAGTACTCGTCCACGTCGTGGCT
CGTGCTCCTCGAGAAGATGAGGTGCTAGCAAAAGAAACAGCTGCTCTGTC
CAAGAGGGCAGGCCACAGGTGGAGAAGCACAGCTCCCAGTACGGCAGTCC
CAAGTGCGCGATGGCCATCCGAAGGTATTCACTAAAGGTGTCCGCCAAAA
ACTGCCAGCTCAGGGTGCTCAGCTCTAGCAGATAGAACTTGGGATTGTTG
GAACTGGTAGATTCGTACAGCATACACACCTTGGCCACCTCGTTTACGTT
GTTGATCTCAAATATTTTCGATTTGGCCGTTATAATAGGCGTGGCATTGC
CCCACTTGTCTTTTCCGGTGGCAATAGGTGCTGGAAGGGATTGAGAGCTC
CCGGCTGCTCCCACAACATCCGAGTTGCTATTGGGCACAGCCGTCGAATT
GCTGGAGTGGCTCGATGTGGTTTCTATGTTCTCCCGCAAAAGGGTCACTT
GCAGCAAGTGCGGAAAGTGAATGTGACCCACGCGCCTAATATCGTTGGGA
GCATATTGGTAGCTCCAGTTTAAGATAAAGCCATCAGAAGATAGGTAGAA
CTTCTTCATATCTTCCGGGAGGTAGACGCAGTGCCTCTGCTCCCAATTCA
CCAACTGGCAGGCATTCAGAGGTTGTCGTCGCTCCAACGTCACATTACAT
ACCCTTGGCACATTGGATAGCGTCCTTATCAGACCGAGGGTCAAATTTTC
ATAAAATGCATCCTCTGGCGAGAGCTTCTTGNTCATCATGTCGACTGATA
ACT

BS06715.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-PA 873 CG6931-RA 1..873 889..17 4346 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-RA 1075 CG6931-RA 48..920 889..17 4354 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11991481..11991845 381..17 1825 100 Minus
3L 28110227 3L 11991142..11991417 648..373 1380 100 Minus
3L 28110227 3L 11990917..11991084 816..649 840 100 Minus
3L 28110227 3L 11990783..11990855 889..817 354 98.6 Minus
Blast to na_te.dros performed on 2015-02-01 08:27:23 has no hits.

BS06715.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:48 Download gff for BS06715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6931-PA 1..873 17..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:50 Download gff for BS06715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6931-PA 1..873 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:24:54 Download gff for BS06715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 48..929 8..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:15 Download gff for BS06715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 48..929 8..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:15 Download gff for BS06715.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11991483..11991854 8..379 99   Minus
3L 11990783..11990855 817..889 98 -> Minus
3L 11990917..11991084 649..816 100 -> Minus
3L 11991142..11991410 380..648 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:24:54 Download gff for BS06715.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11983883..11983955 817..889 98 -> Minus
arm_3L 11984017..11984184 649..816 100 -> Minus
arm_3L 11984242..11984510 380..648 100 -> Minus
arm_3L 11984583..11984954 8..379 99   Minus

BS06715.5prime Sequence

902 bp (826 high quality bases) assembled on 2005-12-04

> BS06715.5prime
GAAGTTATCAGTCGACATGATGAACAAGAAGCTCTCGCCAGAGGATGCAT
TTTATGAAAATTTGACCCTCGGTCTGATAAGGACGCTATCCAATGTGCCA
AGGGTATGTAATGTGACGTTGGAGCGACGACAACCTCTGAATGCCTGCCA
GTTGGTGAATTGGGAGCAGAGGCACTGCGTCTACCTCCCGGAAGATATGA
AGAAGTTCTACCTATCTTCTGATGGCTTTATCTTAAACTGGAGCTACCAA
TATGCTCCCAACGATATTAGGCGCGTGGGTCACATTCACTTTCCGCACTT
GCTGCAAGTGACCCTTTTGCGGGAGAACATAGAAACCACATCGAGCCACT
CCAGCAATTCGACGGCTGTGCCCAATAGCAACTCGGATGTTGTGGGAGCA
GCCGGGAGCTCTCAATCCCTTCCAGCACCTATTGCCACCGGAAAAGACAA
GTGGGGCAATGCCACGCCTATTATAACGGCCAAATCGAAAATATTTGAGA
TCAACAACGTAAACGAGGTGGCCAAGGTGTGTATGCTGTACGAATCTACC
AGTTCCAACAATCCCAAGTTCTATCTGCTAGAGCTGAGCACCCTGAGCTG
GCAGTTTTTGGCGGACACCTTTAGTGAATACCTTCGGATGGCCATCGCGC
ACTTGGGACTGCCGTACTGGGAGCTGTGCTTCTCCACCTGTGGCCTGCCC
TCTTGGACAGAGCAGCTGTTTCTTTTGCTAGCACCTCATCTTCTCGAGGA
GCACGAGCCACGACGTGGACGAGTACTGAATCCCGCTTGCGAGCATCCGT
ACAATATCATTGATCCGAACATTTTTCGGGGTAAACCCAAAAGCGTGGCA
AANGCAACGGCTACCAGCACAAACAAAATCATAAATAGAAGCTTTCTAGA
CC

BS06715.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-PA 873 CG6931-RA 1..854 17..870 4226 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-RA 1075 CG6931-RA 48..920 17..888 4314 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11991481..11991845 525..888 1749 99.2 Plus
3L 28110227 3L 11991142..11991417 258..533 1380 100 Plus
3L 28110227 3L 11990917..11991084 90..257 840 100 Plus
3L 28110227 3L 11990783..11990855 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:08:14 has no hits.

BS06715.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:49 Download gff for BS06715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6931-PA 1..873 17..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:52 Download gff for BS06715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6931-PA 1..873 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:14 Download gff for BS06715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 48..929 17..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:57 Download gff for BS06715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 48..929 17..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:57 Download gff for BS06715.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11991142..11991410 258..526 100 -> Plus
3L 11990783..11990855 17..89 100 -> Plus
3L 11990917..11991084 90..257 100 -> Plus
3L 11991483..11991854 527..897 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:14 Download gff for BS06715.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11983883..11983955 17..89 100 -> Plus
arm_3L 11984017..11984184 90..257 100 -> Plus
arm_3L 11984242..11984510 258..526 100 -> Plus
arm_3L 11984583..11984954 527..897 98   Plus

BS06715.complete Sequence

905 bp (905 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635596

> BS06715.complete
GAAGTTATCAGTCGACATGATGAACAAGAAGCTCTCGCCAGAGGATGCAT
TTTATGAAAATTTGACCCTCGGTCTGATAAGGACGCTATCCAATGTGCCA
AGGGTATGTAATGTGACGTTGGAGCGACGACAACCTCTGAATGCCTGCCA
GTTGGTGAATTGGGAGCAGAGGCACTGCGTCTACCTCCCGGAAGATATGA
AGAAGTTCTACCTATCTTCTGATGGCTTTATCTTAAACTGGAGCTACCAA
TATGCTCCCAACGATATTAGGCGCGTGGGTCACATTCACTTTCCGCACTT
GCTGCAAGTGACCCTTTTGCGGGAGAACATAGAAACCACATCGAGCCACT
CCAGCAATTCGACGGCTGTGCCCAATAGCAACTCGGATGTTGTGGGAGCA
GCCGGGAGCTCTCAATCCCTTCCAGCACCTATTGCCACCGGAAAAGACAA
GTGGGGCAATGCCACGCCTATTATAACGGCCAAATCGAAAATATTTGAGA
TCAACAACGTAAACGAGGTGGCCAAGGTGTGTATGCTGTACGAATCTACC
AGTTCCAACAATCCCAAGTTCTATCTGCTAGAGCTGAGCACCCTGAGCTG
GCAGTTTTTGGCGGACACCTTTAGTGAATACCTTCGGATGGCCATCGCGC
ACTTGGGACTGCCGTACTGGGAGCTGTGCTTCTCCACCTGTGGCCTGCCC
TCTTGGACAGAGCAGCTGTTTCTTTTGCTAGCACCTCATCTTCTCGAGGA
GCACGAGCCACGACGTGGACGAGTACTGAATCCCGCTTGCGAGCATCCGT
ACAATATCATTGATCCGAACATTTTTCGGGGTAAACCAAAAAGCGTGGCA
AAAGCAACGGCTACCAGCACCAAACAAAATCATAAATAGAAGCTTTCTAG
ACCAT

BS06715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-RA 873 CG6931-PA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-RA 1075 CG6931-RA 48..920 17..889 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11991481..11991845 525..889 1825 100 Plus
3L 28110227 3L 11991142..11991417 258..533 1380 100 Plus
3L 28110227 3L 11990917..11991084 90..257 840 100 Plus
3L 28110227 3L 11990783..11990855 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:37:50 has no hits.

BS06715.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:58 Download gff for BS06715.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:48 Download gff for BS06715.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 40..921 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:25 Download gff for BS06715.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 48..914 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:58 Download gff for BS06715.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 40..921 17..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:17 Download gff for BS06715.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 48..914 17..883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:17 Download gff for BS06715.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11991483..11991839 527..883 100   Plus
3L 11990783..11990855 17..89 100 -> Plus
3L 11990917..11991084 90..257 100 -> Plus
3L 11991142..11991410 258..526 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:25 Download gff for BS06715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11983883..11983955 17..89 100 -> Plus
arm_3L 11984017..11984184 90..257 100 -> Plus
arm_3L 11984242..11984510 258..526 100 -> Plus
arm_3L 11984583..11984939 527..883 100   Plus

BS06715.pep Sequence

Translation from 16 to 888

> BS06715.pep
MMNKKLSPEDAFYENLTLGLIRTLSNVPRVCNVTLERRQPLNACQLVNWE
QRHCVYLPEDMKKFYLSSDGFILNWSYQYAPNDIRRVGHIHFPHLLQVTL
LRENIETTSSHSSNSTAVPNSNSDVVGAAGSSQSLPAPIATGKDKWGNAT
PIITAKSKIFEINNVNEVAKVCMLYESTSSNNPKFYLLELSTLSWQFLAD
TFSEYLRMAIAHLGLPYWELCFSTCGLPSWTEQLFLLLAPHLLEEHEPRR
GRVLNPACEHPYNIIDPNIFRGKPKSVAKATATSTKQNHK*

BS06715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-PA 290 CG6931-PA 1..290 1..290 1546 100 Plus