Clone Sequence Records
BS06715.3prime Sequence
903 bp (781 high quality bases) assembled on 2005-12-04
> BS06715.3prime
ATGGTCTAGAAAGCTTCTATTTATGATTTTGTTTGGTGCTGGTAGCCGTT
GCTTTTGCCACGCTTTTTGGTTTACCCCGAAAAATGTTCGGATCAATGAT
ATTGTACGGATGCTCGCAAGCGGGATTCAGTACTCGTCCACGTCGTGGCT
CGTGCTCCTCGAGAAGATGAGGTGCTAGCAAAAGAAACAGCTGCTCTGTC
CAAGAGGGCAGGCCACAGGTGGAGAAGCACAGCTCCCAGTACGGCAGTCC
CAAGTGCGCGATGGCCATCCGAAGGTATTCACTAAAGGTGTCCGCCAAAA
ACTGCCAGCTCAGGGTGCTCAGCTCTAGCAGATAGAACTTGGGATTGTTG
GAACTGGTAGATTCGTACAGCATACACACCTTGGCCACCTCGTTTACGTT
GTTGATCTCAAATATTTTCGATTTGGCCGTTATAATAGGCGTGGCATTGC
CCCACTTGTCTTTTCCGGTGGCAATAGGTGCTGGAAGGGATTGAGAGCTC
CCGGCTGCTCCCACAACATCCGAGTTGCTATTGGGCACAGCCGTCGAATT
GCTGGAGTGGCTCGATGTGGTTTCTATGTTCTCCCGCAAAAGGGTCACTT
GCAGCAAGTGCGGAAAGTGAATGTGACCCACGCGCCTAATATCGTTGGGA
GCATATTGGTAGCTCCAGTTTAAGATAAAGCCATCAGAAGATAGGTAGAA
CTTCTTCATATCTTCCGGGAGGTAGACGCAGTGCCTCTGCTCCCAATTCA
CCAACTGGCAGGCATTCAGAGGTTGTCGTCGCTCCAACGTCACATTACAT
ACCCTTGGCACATTGGATAGCGTCCTTATCAGACCGAGGGTCAAATTTTC
ATAAAATGCATCCTCTGGCGAGAGCTTCTTGNTCATCATGTCGACTGATA
ACT
BS06715.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6931-PA | 873 | CG6931-RA | 1..873 | 889..17 | 4346 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6931-RA | 1075 | CG6931-RA | 48..920 | 889..17 | 4354 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11991481..11991845 | 381..17 | 1825 | 100 | Minus |
3L | 28110227 | 3L | 11991142..11991417 | 648..373 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 11990917..11991084 | 816..649 | 840 | 100 | Minus |
3L | 28110227 | 3L | 11990783..11990855 | 889..817 | 354 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:27:23 has no hits.
BS06715.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:48 Download gff for
BS06715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-PA | 1..873 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:50 Download gff for
BS06715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-PA | 1..873 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:24:54 Download gff for
BS06715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-RA | 48..929 | 8..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:15 Download gff for
BS06715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-RA | 48..929 | 8..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:15 Download gff for
BS06715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11991483..11991854 | 8..379 | 99 | | Minus |
3L | 11990783..11990855 | 817..889 | 98 | -> | Minus |
3L | 11990917..11991084 | 649..816 | 100 | -> | Minus |
3L | 11991142..11991410 | 380..648 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:24:54 Download gff for
BS06715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11983883..11983955 | 817..889 | 98 | -> | Minus |
arm_3L | 11984017..11984184 | 649..816 | 100 | -> | Minus |
arm_3L | 11984242..11984510 | 380..648 | 100 | -> | Minus |
arm_3L | 11984583..11984954 | 8..379 | 99 | | Minus |
BS06715.5prime Sequence
902 bp (826 high quality bases) assembled on 2005-12-04
> BS06715.5prime
GAAGTTATCAGTCGACATGATGAACAAGAAGCTCTCGCCAGAGGATGCAT
TTTATGAAAATTTGACCCTCGGTCTGATAAGGACGCTATCCAATGTGCCA
AGGGTATGTAATGTGACGTTGGAGCGACGACAACCTCTGAATGCCTGCCA
GTTGGTGAATTGGGAGCAGAGGCACTGCGTCTACCTCCCGGAAGATATGA
AGAAGTTCTACCTATCTTCTGATGGCTTTATCTTAAACTGGAGCTACCAA
TATGCTCCCAACGATATTAGGCGCGTGGGTCACATTCACTTTCCGCACTT
GCTGCAAGTGACCCTTTTGCGGGAGAACATAGAAACCACATCGAGCCACT
CCAGCAATTCGACGGCTGTGCCCAATAGCAACTCGGATGTTGTGGGAGCA
GCCGGGAGCTCTCAATCCCTTCCAGCACCTATTGCCACCGGAAAAGACAA
GTGGGGCAATGCCACGCCTATTATAACGGCCAAATCGAAAATATTTGAGA
TCAACAACGTAAACGAGGTGGCCAAGGTGTGTATGCTGTACGAATCTACC
AGTTCCAACAATCCCAAGTTCTATCTGCTAGAGCTGAGCACCCTGAGCTG
GCAGTTTTTGGCGGACACCTTTAGTGAATACCTTCGGATGGCCATCGCGC
ACTTGGGACTGCCGTACTGGGAGCTGTGCTTCTCCACCTGTGGCCTGCCC
TCTTGGACAGAGCAGCTGTTTCTTTTGCTAGCACCTCATCTTCTCGAGGA
GCACGAGCCACGACGTGGACGAGTACTGAATCCCGCTTGCGAGCATCCGT
ACAATATCATTGATCCGAACATTTTTCGGGGTAAACCCAAAAGCGTGGCA
AANGCAACGGCTACCAGCACAAACAAAATCATAAATAGAAGCTTTCTAGA
CC
BS06715.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6931-PA | 873 | CG6931-RA | 1..854 | 17..870 | 4226 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6931-RA | 1075 | CG6931-RA | 48..920 | 17..888 | 4314 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11991481..11991845 | 525..888 | 1749 | 99.2 | Plus |
3L | 28110227 | 3L | 11991142..11991417 | 258..533 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 11990917..11991084 | 90..257 | 840 | 100 | Plus |
3L | 28110227 | 3L | 11990783..11990855 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:08:14 has no hits.
BS06715.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:49 Download gff for
BS06715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-PA | 1..873 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:52 Download gff for
BS06715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-PA | 1..873 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:14 Download gff for
BS06715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-RA | 48..929 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:57 Download gff for
BS06715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-RA | 48..929 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:57 Download gff for
BS06715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11991142..11991410 | 258..526 | 100 | -> | Plus |
3L | 11990783..11990855 | 17..89 | 100 | -> | Plus |
3L | 11990917..11991084 | 90..257 | 100 | -> | Plus |
3L | 11991483..11991854 | 527..897 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:14 Download gff for
BS06715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11983883..11983955 | 17..89 | 100 | -> | Plus |
arm_3L | 11984017..11984184 | 90..257 | 100 | -> | Plus |
arm_3L | 11984242..11984510 | 258..526 | 100 | -> | Plus |
arm_3L | 11984583..11984954 | 527..897 | 98 | | Plus |
BS06715.complete Sequence
905 bp (905 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635596
> BS06715.complete
GAAGTTATCAGTCGACATGATGAACAAGAAGCTCTCGCCAGAGGATGCAT
TTTATGAAAATTTGACCCTCGGTCTGATAAGGACGCTATCCAATGTGCCA
AGGGTATGTAATGTGACGTTGGAGCGACGACAACCTCTGAATGCCTGCCA
GTTGGTGAATTGGGAGCAGAGGCACTGCGTCTACCTCCCGGAAGATATGA
AGAAGTTCTACCTATCTTCTGATGGCTTTATCTTAAACTGGAGCTACCAA
TATGCTCCCAACGATATTAGGCGCGTGGGTCACATTCACTTTCCGCACTT
GCTGCAAGTGACCCTTTTGCGGGAGAACATAGAAACCACATCGAGCCACT
CCAGCAATTCGACGGCTGTGCCCAATAGCAACTCGGATGTTGTGGGAGCA
GCCGGGAGCTCTCAATCCCTTCCAGCACCTATTGCCACCGGAAAAGACAA
GTGGGGCAATGCCACGCCTATTATAACGGCCAAATCGAAAATATTTGAGA
TCAACAACGTAAACGAGGTGGCCAAGGTGTGTATGCTGTACGAATCTACC
AGTTCCAACAATCCCAAGTTCTATCTGCTAGAGCTGAGCACCCTGAGCTG
GCAGTTTTTGGCGGACACCTTTAGTGAATACCTTCGGATGGCCATCGCGC
ACTTGGGACTGCCGTACTGGGAGCTGTGCTTCTCCACCTGTGGCCTGCCC
TCTTGGACAGAGCAGCTGTTTCTTTTGCTAGCACCTCATCTTCTCGAGGA
GCACGAGCCACGACGTGGACGAGTACTGAATCCCGCTTGCGAGCATCCGT
ACAATATCATTGATCCGAACATTTTTCGGGGTAAACCAAAAAGCGTGGCA
AAAGCAACGGCTACCAGCACCAAACAAAATCATAAATAGAAGCTTTCTAG
ACCAT
BS06715.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6931-RA | 873 | CG6931-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6931-RA | 1075 | CG6931-RA | 48..920 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11991481..11991845 | 525..889 | 1825 | 100 | Plus |
3L | 28110227 | 3L | 11991142..11991417 | 258..533 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 11990917..11991084 | 90..257 | 840 | 100 | Plus |
3L | 28110227 | 3L | 11990783..11990855 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:37:50 has no hits.
BS06715.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:58 Download gff for
BS06715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-RA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:48 Download gff for
BS06715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-RA | 40..921 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:25 Download gff for
BS06715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-RA | 48..914 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:58 Download gff for
BS06715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-RA | 40..921 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:17 Download gff for
BS06715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6931-RA | 48..914 | 17..883 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:17 Download gff for
BS06715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11991483..11991839 | 527..883 | 100 | | Plus |
3L | 11990783..11990855 | 17..89 | 100 | -> | Plus |
3L | 11990917..11991084 | 90..257 | 100 | -> | Plus |
3L | 11991142..11991410 | 258..526 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:25 Download gff for
BS06715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11983883..11983955 | 17..89 | 100 | -> | Plus |
arm_3L | 11984017..11984184 | 90..257 | 100 | -> | Plus |
arm_3L | 11984242..11984510 | 258..526 | 100 | -> | Plus |
arm_3L | 11984583..11984939 | 527..883 | 100 | | Plus |
BS06715.pep Sequence
Translation from 16 to 888
> BS06715.pep
MMNKKLSPEDAFYENLTLGLIRTLSNVPRVCNVTLERRQPLNACQLVNWE
QRHCVYLPEDMKKFYLSSDGFILNWSYQYAPNDIRRVGHIHFPHLLQVTL
LRENIETTSSHSSNSTAVPNSNSDVVGAAGSSQSLPAPIATGKDKWGNAT
PIITAKSKIFEINNVNEVAKVCMLYESTSSNNPKFYLLELSTLSWQFLAD
TFSEYLRMAIAHLGLPYWELCFSTCGLPSWTEQLFLLLAPHLLEEHEPRR
GRVLNPACEHPYNIIDPNIFRGKPKSVAKATATSTKQNHK*
BS06715.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6931-PA | 290 | CG6931-PA | 1..290 | 1..290 | 1546 | 100 | Plus |