Clone BS06718 Report

Search the DGRC for BS06718

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCapa-RA
Protein status:BS06718.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06718.5prime Sequence

486 bp (485 high quality bases) assembled on 2005-12-04

> BS06718.5prime
GAAGTTATCAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGA
TTTTCATAATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAAC
CGACGAGGTGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAG
CGATCCCAGTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCC
TCGACGGCATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGAT
TTCCAAAAGAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGG
TGACGCCGAGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGC
TGGACAAGCGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGTCCC
CGGCTGGGAAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAA
GGGACAGAAGGAACTCAACTAGAAGCTTTCTAGACC

BS06718.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15520-PA 456 capa-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-RA 695 CG15520-RA 90..546 17..473 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29913140..29913371 473..242 1160 100 Minus
3R 32079331 3R 29913441..29913603 242..80 815 100 Minus
3R 32079331 3R 29914194..29914257 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:28:05 has no hits.

BS06718.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:56 Download gff for BS06718.5prime
Subject Subject Range Query Range Percent Splice Strand
capa-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:59 Download gff for BS06718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15520-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:50:41 Download gff for BS06718.5prime
Subject Subject Range Query Range Percent Splice Strand
capa-RA 90..546 17..473 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:36:46 Download gff for BS06718.5prime
Subject Subject Range Query Range Percent Splice Strand
Capa-RA 90..546 17..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:36:46 Download gff for BS06718.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29913140..29913370 243..473 100 <- Minus
3R 29913441..29913602 81..242 100 <- Minus
3R 29914194..29914254 20..80 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:50:41 Download gff for BS06718.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25738862..25739092 243..473 100 <- Minus
arm_3R 25739163..25739324 81..242 100 <- Minus
arm_3R 25739916..25739976 20..80 100 <- Minus

BS06718.3prime Sequence

486 bp (485 high quality bases) assembled on 2005-12-04

> BS06718.3prime
ATGGTCTAGAAAGCTTCTAGTTGAGTTCCTTCTGTCCCTTGGAGATGTCC
GCAAACGACTTGGCGTCCACACTGCGCTTTCCCAGCCGGGGACCGAACCA
CAATCCCGAGGAGGCGCTGGGTCCCGTGCGCTTGTCCAGCACCTGTTGCA
GAGCCAGAAGGTGGGCCCACTTCCTCAGCTCGGCGTCACCGCGGCCAACG
CGTGGGAAGGCCACCAGACCACTGGCTTTCTTTTGGAAATCAGCCTCATT
GTAATCCTCCTGGGAGGCATCTCCGTAAATGCCGTCGAGGACTCCGGCCT
CTAATCCGTCGCGCAGACTGTTGGCCAGACTGGGATCGCTGCGACCAACG
CGCGGGAAGGCATAGAGCCCCATGTTGGCACCTCGTCGGTTCTTGTCGTG
GTCCGTCTCAGCTGTACTGAATTCGGCGATTATGAAAATCACTAGAACTA
TGTGGACCAACATAGATTTCATGTCGACTGATAACT

BS06718.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15520-PA 456 capa-RA 1..456 472..17 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-RA 695 CG15520-RA 90..546 472..16 2285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29913140..29913371 16..247 1160 100 Plus
3R 32079331 3R 29913441..29913603 247..409 815 100 Plus
3R 32079331 3R 29914194..29914257 409..472 320 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:56:07 has no hits.

BS06718.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:55 Download gff for BS06718.3prime
Subject Subject Range Query Range Percent Splice Strand
capa-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:58 Download gff for BS06718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15520-PA 1..456 17..472 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:33 Download gff for BS06718.3prime
Subject Subject Range Query Range Percent Splice Strand
capa-RA 90..546 16..472 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:10 Download gff for BS06718.3prime
Subject Subject Range Query Range Percent Splice Strand
Capa-RA 90..546 16..472 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:10 Download gff for BS06718.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29913140..29913370 16..246 100 <- Plus
3R 29913441..29913602 247..408 100 <- Plus
3R 29914194..29914254 409..469 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:33 Download gff for BS06718.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25738862..25739092 16..246 100 <- Plus
arm_3R 25739163..25739324 247..408 100 <- Plus
arm_3R 25739916..25739976 409..469 100 <- Plus

BS06718.complete Sequence

488 bp (488 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635597

> BS06718.complete
GAAGTTATCAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGA
TTTTCATAATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAAC
CGACGAGGTGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAG
CGATCCCAGTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCC
TCGACGGCATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGAT
TTCCAAAAGAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGG
TGACGCCGAGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGC
TGGACAAGCGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGTCCC
CGGCTGGGAAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAA
GGGACAGAAGGAACTCAACTAGAAGCTTTCTAGACCAT

BS06718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-RA 456 CG15520-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-RA 695 CG15520-RA 90..546 17..473 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29913140..29913371 473..242 1160 100 Minus
3R 32079331 3R 29913441..29913603 242..80 815 100 Minus
3R 32079331 3R 29914194..29914257 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:54:22 has no hits.

BS06718.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:51 Download gff for BS06718.complete
Subject Subject Range Query Range Percent Splice Strand
capa-RA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:01 Download gff for BS06718.complete
Subject Subject Range Query Range Percent Splice Strand
capa-RA 72..528 17..473 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:31 Download gff for BS06718.complete
Subject Subject Range Query Range Percent Splice Strand
capa-RA 90..545 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:51 Download gff for BS06718.complete
Subject Subject Range Query Range Percent Splice Strand
capa-RA 72..528 17..473 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:43 Download gff for BS06718.complete
Subject Subject Range Query Range Percent Splice Strand
Capa-RA 90..545 17..472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:43 Download gff for BS06718.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29913441..29913602 81..242 100 <- Minus
3R 29914194..29914257 17..80 100   Minus
3R 29913141..29913370 243..472 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:31 Download gff for BS06718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25739163..25739324 81..242 100 <- Minus
arm_3R 25739916..25739979 17..80 100   Minus
arm_3R 25738863..25739092 243..472 100 <- Minus

BS06718.pep Sequence

Translation from 16 to 471

> BS06718.pep
MKSMLVHIVLVIFIIAEFSTAETDHDKNRRGANMGLYAFPRVGRSDPSLA
NSLRDGLEAGVLDGIYGDASQEDYNEADFQKKASGLVAFPRVGRGDAELR
KWAHLLALQQVLDKRTGPSASSGLWFGPRLGKRSVDAKSFADISKGQKEL
N*

BS06718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-PA 151 CG15520-PA 1..151 1..151 771 100 Plus