Clone Sequence Records
BS06718.5prime Sequence
486 bp (485 high quality bases) assembled on 2005-12-04
> BS06718.5prime
GAAGTTATCAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGA
TTTTCATAATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAAC
CGACGAGGTGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAG
CGATCCCAGTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCC
TCGACGGCATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGAT
TTCCAAAAGAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGG
TGACGCCGAGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGC
TGGACAAGCGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGTCCC
CGGCTGGGAAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAA
GGGACAGAAGGAACTCAACTAGAAGCTTTCTAGACC
BS06718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15520-PA | 456 | capa-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-RA | 695 | CG15520-RA | 90..546 | 17..473 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29913140..29913371 | 473..242 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 29913441..29913603 | 242..80 | 815 | 100 | Minus |
3R | 32079331 | 3R | 29914194..29914257 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:28:05 has no hits.
BS06718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:56 Download gff for
BS06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:59 Download gff for
BS06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15520-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:50:41 Download gff for
BS06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 90..546 | 17..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:36:46 Download gff for
BS06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Capa-RA | 90..546 | 17..473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:36:46 Download gff for
BS06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29913140..29913370 | 243..473 | 100 | <- | Minus |
3R | 29913441..29913602 | 81..242 | 100 | <- | Minus |
3R | 29914194..29914254 | 20..80 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:50:41 Download gff for
BS06718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25738862..25739092 | 243..473 | 100 | <- | Minus |
arm_3R | 25739163..25739324 | 81..242 | 100 | <- | Minus |
arm_3R | 25739916..25739976 | 20..80 | 100 | <- | Minus |
BS06718.3prime Sequence
486 bp (485 high quality bases) assembled on 2005-12-04
> BS06718.3prime
ATGGTCTAGAAAGCTTCTAGTTGAGTTCCTTCTGTCCCTTGGAGATGTCC
GCAAACGACTTGGCGTCCACACTGCGCTTTCCCAGCCGGGGACCGAACCA
CAATCCCGAGGAGGCGCTGGGTCCCGTGCGCTTGTCCAGCACCTGTTGCA
GAGCCAGAAGGTGGGCCCACTTCCTCAGCTCGGCGTCACCGCGGCCAACG
CGTGGGAAGGCCACCAGACCACTGGCTTTCTTTTGGAAATCAGCCTCATT
GTAATCCTCCTGGGAGGCATCTCCGTAAATGCCGTCGAGGACTCCGGCCT
CTAATCCGTCGCGCAGACTGTTGGCCAGACTGGGATCGCTGCGACCAACG
CGCGGGAAGGCATAGAGCCCCATGTTGGCACCTCGTCGGTTCTTGTCGTG
GTCCGTCTCAGCTGTACTGAATTCGGCGATTATGAAAATCACTAGAACTA
TGTGGACCAACATAGATTTCATGTCGACTGATAACT
BS06718.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15520-PA | 456 | capa-RA | 1..456 | 472..17 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-RA | 695 | CG15520-RA | 90..546 | 472..16 | 2285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29913140..29913371 | 16..247 | 1160 | 100 | Plus |
3R | 32079331 | 3R | 29913441..29913603 | 247..409 | 815 | 100 | Plus |
3R | 32079331 | 3R | 29914194..29914257 | 409..472 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:56:07 has no hits.
BS06718.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:49:55 Download gff for
BS06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:31:58 Download gff for
BS06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15520-PA | 1..456 | 17..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:33 Download gff for
BS06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 90..546 | 16..472 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:10 Download gff for
BS06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Capa-RA | 90..546 | 16..472 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:10 Download gff for
BS06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29913140..29913370 | 16..246 | 100 | <- | Plus |
3R | 29913441..29913602 | 247..408 | 100 | <- | Plus |
3R | 29914194..29914254 | 409..469 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:33 Download gff for
BS06718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25738862..25739092 | 16..246 | 100 | <- | Plus |
arm_3R | 25739163..25739324 | 247..408 | 100 | <- | Plus |
arm_3R | 25739916..25739976 | 409..469 | 100 | <- | Plus |
BS06718.complete Sequence
488 bp (488 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635597
> BS06718.complete
GAAGTTATCAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGA
TTTTCATAATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAAC
CGACGAGGTGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAG
CGATCCCAGTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCC
TCGACGGCATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGAT
TTCCAAAAGAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGG
TGACGCCGAGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGC
TGGACAAGCGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGTCCC
CGGCTGGGAAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAA
GGGACAGAAGGAACTCAACTAGAAGCTTTCTAGACCAT
BS06718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-RA | 456 | CG15520-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-RA | 695 | CG15520-RA | 90..546 | 17..473 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29913140..29913371 | 473..242 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 29913441..29913603 | 242..80 | 815 | 100 | Minus |
3R | 32079331 | 3R | 29914194..29914257 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:54:22 has no hits.
BS06718.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:51 Download gff for
BS06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:01 Download gff for
BS06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 72..528 | 17..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:31 Download gff for
BS06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 90..545 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:51 Download gff for
BS06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 72..528 | 17..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:43 Download gff for
BS06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Capa-RA | 90..545 | 17..472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:43 Download gff for
BS06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29913441..29913602 | 81..242 | 100 | <- | Minus |
3R | 29914194..29914257 | 17..80 | 100 | | Minus |
3R | 29913141..29913370 | 243..472 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:31 Download gff for
BS06718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25739163..25739324 | 81..242 | 100 | <- | Minus |
arm_3R | 25739916..25739979 | 17..80 | 100 | | Minus |
arm_3R | 25738863..25739092 | 243..472 | 100 | <- | Minus |
BS06718.pep Sequence
Translation from 16 to 471
> BS06718.pep
MKSMLVHIVLVIFIIAEFSTAETDHDKNRRGANMGLYAFPRVGRSDPSLA
NSLRDGLEAGVLDGIYGDASQEDYNEADFQKKASGLVAFPRVGRGDAELR
KWAHLLALQQVLDKRTGPSASSGLWFGPRLGKRSVDAKSFADISKGQKEL
N*
BS06718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-PA | 151 | CG15520-PA | 1..151 | 1..151 | 771 | 100 | Plus |