Clone Sequence Records
BS06722.3prime Sequence
944 bp (780 high quality bases) assembled on 2005-12-04
> BS06722.3prime
ATGGTCTAGAAAGCTTTCACTTGGCTCCCACTGCTGCCCGCACCTCGGCG
GGAATCTTTTCCACCAGCGCGGCATGGTCCTGTCCCAGGCTGGCCAGCAC
TCCCTGTCGATTCACGTGCTCCACATCCGCATTGTAGGCGTAGTGCTCGC
CGTTGATGTTGGTGAGGCAGCCGCCCTGGGCCTCTAGAACGGCCTCGGGT
GCGCAGGTGTCCCACTTCTTGCAGCCCGGCGTGGCGAAGACGTACGCGTG
GGCCTTTCCCTCCAGCAGCTGGAGCACTTTGAACCCAGCGCCTCCGACTT
TCAGAACTTCTGTGGATGCGAATGCGTTGAGGGCTTGCTGATGCAGGGCA
TTGGAATGCGAGCGAGTGGTGGTTATGATGAACTGGCCGGCTGGCGCGGG
GACTGCCGTGAATCCTCCCGTGCCCAGACCCTTCAGGCCCCAAATGGTGC
GACCCATTTCGCCATCGGGCTGTTGGTAGAATGGCTGATGAATGATGCCG
CCCACAGCAGCATCCTTCACGGCTATGCCGATCAGGACGGTCACGTGTTC
AACGTGTCCCTGTGTATACTCCGCTGTGCCGTCTAGGGGATCTACCCATA
TGACAAAGTCCTCGGGCTTGACATCCTTCCACTCAGCGGGGCAACTGTGC
TGCAGGAATTCCTCATCCAACTCGTTCACCAGCCAGTCGTCGCAGACATT
CAGATCGGATCCACCCTCCTCGCCAATGATCTTGACGGTGGGGAACTTTT
TGGCCAAGGAGGCGATAATGCAACGCTGGGCAGAGCGATCTGCCTCCGTC
TGCGGATCGTTCTTGCCCTTGTCCACTATGCCCNAGTCACCCTTCTTGAG
CACGTCGCGTATGATGCCGCCAGCCCGCTTGGCGGTGCTGATCGAAGACG
CCATGACGCGCATAATTACCGGAGCAGTTGCAGCCATGTCGACT
BS06722.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-PA | 921 | CG7789-RA | 1..921 | 937..17 | 4536 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-RA | 1130 | CG7789-RA | 107..1027 | 937..17 | 4564 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29803744..29804286 | 559..17 | 2715 | 100 | Minus |
3R | 32079331 | 3R | 29803302..29803681 | 937..558 | 1859 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:18:15 has no hits.
BS06722.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:04 Download gff for
BS06722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-PA | 1..921 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:08 Download gff for
BS06722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-PA | 1..921 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:53:23 Download gff for
BS06722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 100..1036 | 10..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:45 Download gff for
BS06722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 100..1036 | 10..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:45 Download gff for
BS06722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29803295..29803680 | 559..944 | 98 | -> | Minus |
3R | 29803745..29804295 | 10..558 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:53:23 Download gff for
BS06722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25629017..25629402 | 559..944 | 98 | -> | Minus |
arm_3R | 25629467..25630017 | 10..558 | 99 | | Minus |
BS06722.5prime Sequence
921 bp (737 high quality bases) assembled on 2005-12-04
> BS06722.5prime
GAAGTTATCAGTCGACATGGCTGCAACTGCTCCGGTAATTATGCGCGTCA
TGGCGTCCTCGATCAGCACCGCCAAGCGGGCTGGCGGCATCATACGCGAC
GTGCTCAAGAAGGGTGACCTGGGCATAGTGGACAAGGGCAAGAACGATCC
GCAGACGGAGGCAGATCGCTCTGCCCAGCGTTGCATTATCGCCTCCTTGG
CCAAAAAGTTCCCCACCGTCAAGATCATTGGCGAGGAGGGTGGATCCGAT
CTGAATGTCTGCGACGACTGGCTGGTGAACGAGTTGGATGAGGAATTCCT
GCAGCACAGTTGCCCCGCTGAGTGGAAGGATGTCAAGCCCGAGGACTTTG
TCATATGGGTAGATCCCCTAGACGGCACAGCGGAGTATACACAGGGACAC
GTTGAACACGTGACCGTCCTGATCGGCATAGCCGTGAAGGATGCTGCTGT
GGGCGGCATCATTCATCAGCCATTCTACCAACAGCCCGATGGCGAAATGG
GTCGCACCATTTGGGGCCTGAAGGGTCTGGGCACGGGAGGATTCACGGCA
GTCCCCGCGCCAGCCGGCCAGTTCATCATAACCACCACTCGCTCGCATTC
CAATGCCCTGCATCAGCAAGCCCTCAACGCATTCGCATCCACAGAAGTTC
TGAAAGTCGGAGGCGCTGGGTTCAAAGTGCTCCAGCTGCTGGAGGGAAAG
GCCCACGCGTACGTCTTCGCCACGCCGGGCTGCAAGAAGTGGGACACCTG
CGCACCCGAGGCCGTTCTAGAGGCCCAGGGCGGCTGCCTCACCAACATCA
ACGGCGAGCACTACGCCTACAATGCGGATGTGGAGCACGTGAATCGACAG
GGAGTGCTGGCCAGCCTGGGACAGGACCATGCCGCGCTGGTGGAAAAGAT
CCCCGCCGAGGTGCGGGCAGC
BS06722.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-PA | 921 | CG7789-RA | 1..905 | 17..921 | 4500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-RA | 1130 | CG7789-RA | 107..1011 | 17..921 | 4510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29803744..29804270 | 395..921 | 2620 | 99.8 | Plus |
3R | 32079331 | 3R | 29803302..29803681 | 17..396 | 1900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:02:08 has no hits.
BS06722.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:05 Download gff for
BS06722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:10 Download gff for
BS06722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:44 Download gff for
BS06722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 107..1011 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:57 Download gff for
BS06722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 107..1011 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:57 Download gff for
BS06722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29803745..29804270 | 396..921 | 99 | | Plus |
3R | 29803302..29803680 | 17..395 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:44 Download gff for
BS06722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25629024..25629402 | 17..395 | 100 | -> | Plus |
arm_3R | 25629467..25629992 | 396..921 | 99 | | Plus |
BS06722.complete Sequence
953 bp (953 high quality bases) assembled on 2005-12-21
> BS06722.complete
GAAGTTATCAGTCGACATGGCTGCAACTGCTCCGGTAATTATGCGCGTCA
TGGCGTCCTCGATCAGCACCGCCAAGCGGGCTGGCGGCATCATACGCGAC
GTGCTCAAGAAGGGTGACCTGGGCATAGTGGACAAGGGCAAGAACGATCC
GCAGACGGAGGCAGATCGCTCTGCCCAGCGTTGCATTATCGCCTCCTTGG
CCAAAAAGTTCCCCACCGTCAAGATCATTGGCGAGGAGGGTGGATCCGAT
CTGAATGTCTGCGACGACTGGCTGGTGAACGAGTTGGATGAGGAATTCCT
GCAGCACAGTTGCCCCGCTGAGTGGAAGGATGTCAAGCCCGAGGACTTTG
TCATATGGGTAGATCCCCTAGACGGCACAGCGGAGTATACACAGGGACAC
GTTGAACACGTGACCGTCCTGATCGGCATAGCCGTGAAGGATGCTGCTGT
GGGCGGCATCATTCATCAGCCATTCTACCAACAGCCCGATGGCGAAATGG
GTCGCACCATTTGGGGCCTGAAGGGTCTGGGCACGGGAGGATTCACGGCA
GTCCCCGCGCCAGCCGGCCAGTTCATCATAACCACCACTCGCTCGCATTC
CAATGCCCTGCATCAGCAAGCCCTCAACGCATTCGCATCCACAGAAGTTC
TGAAAGTCGGAGGCGCTGGGTTCAAAGTGCTCCAGCTGCTGGAGGGAAAG
GCCCACGCGTACGTCTTCGCCACGCCGGGCTGCAAGAAGTGGGACACCTG
CGCACCCGAGGCCGTTCTAGAGGCCCAGGGCGGCTGCCTCACCAACATCA
ACGGCGAGCACTACGCCTACAATGCGGATGTGGAGCACGTGAATCGACAG
GGAGTGCTGGCCAGCCTGGGACAGGACCATGCCGCGCTGGTGGAAAAGAT
TCCCGCCGAGGTGCGGGCAGCAGTGGGAGCCAAGTGAAAGCTTTCTAGAC
CAT
BS06722.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-RA | 921 | CG7789-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-RA | 1130 | CG7789-RA | 107..1027 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29803744..29804286 | 395..937 | 2715 | 100 | Plus |
3R | 32079331 | 3R | 29803302..29803681 | 17..396 | 1900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:27:28 has no hits.
BS06722.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:34 Download gff for
BS06722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:51 Download gff for
BS06722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 106..1035 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:22 Download gff for
BS06722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 107..1026 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:35 Download gff for
BS06722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 106..1035 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:54 Download gff for
BS06722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 107..1026 | 17..936 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:54 Download gff for
BS06722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29803302..29803680 | 17..395 | 100 | -> | Plus |
3R | 29803745..29804285 | 396..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:22 Download gff for
BS06722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25629024..25629402 | 17..395 | 100 | -> | Plus |
arm_3R | 25629467..25630007 | 396..936 | 100 | | Plus |
BS06722.pep Sequence
Translation from 16 to 936
> BS06722.pep
MAATAPVIMRVMASSISTAKRAGGIIRDVLKKGDLGIVDKGKNDPQTEAD
RSAQRCIIASLAKKFPTVKIIGEEGGSDLNVCDDWLVNELDEEFLQHSCP
AEWKDVKPEDFVIWVDPLDGTAEYTQGHVEHVTVLIGIAVKDAAVGGIIH
QPFYQQPDGEMGRTIWGLKGLGTGGFTAVPAPAGQFIITTTRSHSNALHQ
QALNAFASTEVLKVGGAGFKVLQLLEGKAHAYVFATPGCKKWDTCAPEAV
LEAQGGCLTNINGEHYAYNADVEHVNRQGVLASLGQDHAALVEKIPAEVR
AAVGAK*
BS06722.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-PA | 306 | CG7789-PA | 1..306 | 1..306 | 1601 | 100 | Plus |
CG15743-PB | 355 | CG15743-PB | 57..343 | 8..295 | 360 | 33.1 | Plus |
CG15743-PC | 355 | CG15743-PC | 57..343 | 8..295 | 360 | 33.1 | Plus |
CG15743-PA | 355 | CG15743-PA | 57..343 | 8..295 | 360 | 33.1 | Plus |
Ipp-PA | 375 | CG3028-PA | 159..319 | 113..256 | 157 | 27.4 | Plus |