Clone Sequence Records
BS06724.3prime Sequence
792 bp (791 high quality bases) assembled on 2005-12-04
> BS06724.3prime
ATGGTCTAGAAAGCTTCTAGTGCGTCTCATTGTCGCTGTCTTCGTCCTTG
TTGGCCGCATCGCCGGCTTTCCTCGCCTTCTCCGTCAGTTCTGAGGGATT
TATGAGATGTAGGCCACCGGTTACCCTGCCCACCAAACCCATTTCGAAGC
GGAAGTCCTTGTCCTTCAACTCGTCATGGACTTTGTAGATGATTTCACCA
GCGCTCTCCACCAATTCGTCGGTCCTCATATCCATCTTGAGCTTCTCCAT
CTCAGTCTTGGCCAGCTGCTTGGCCTTGCCGCTGGCGCAGGCGAAGTAAC
CGAAGGAGGAGCCGGACGGCTCGATCTTGTAGAGCTGTGGCCCCTCTACT
TCGTCCCAGGAGGCGAGAATGATGGAAAGTCCGAAGGGGCGGACGGCACT
GTACAGAGTGTAGGCGTGAACGTAGCCGGCGACTCGGTGGCACAGGTGTT
TAAGCGGGATAGCCTGCTCAAATTGCTGTCTGTAGTTGGCTGCCTCCTGA
CGCGCAATGTCAGCCACAAAGTTTCCATCGGCCACCAAGCCGGCCACCGC
CATTCCGATGTTCTTTTCGATGGTGAAGATGCGTCCGCCGGCGTCTGGTT
CGTACAGTTTACTGGTGATGATCTTCTCCACGGCCAGCACCACGGCGTCC
TTGCCCCGAATCCCGATTACGGTGCCGCTCTTCTCCACCGCCTTTGAGGC
GTAGTCGATCTGGAAAACGCGGCCATCAGGCGAAAACTGCGAGGCCGACA
AGTCGTATCCAGTGCCAATAGTACTCATGTCGACTGATAACT
BS06724.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1519-PA | 762 | Prosalpha7-RA | 1..762 | 778..17 | 3810 | 100 | Minus |
CG1519-PB | 708 | Prosalpha7-RB | 1..421 | 778..358 | 2105 | 100 | Minus |
CG1519-PB | 708 | Prosalpha7-RB | 416..708 | 309..17 | 1465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..881 | 778..17 | 3810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847073..9847638 | 192..757 | 2830 | 100 | Plus |
2R | 25286936 | 2R | 9846731..9846905 | 17..191 | 875 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 269..220 | 136 | 80 | Minus |
BS06724.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:08 Download gff for
BS06724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:14 Download gff for
BS06724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:42:05 Download gff for
BS06724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..887 | 10..787 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:18 Download gff for
BS06724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..887 | 10..787 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:18 Download gff for
BS06724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846724..9846905 | 10..191 | 97 | <- | Plus |
2R | 9847073..9847638 | 192..757 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:42:05 Download gff for
BS06724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734229..5734410 | 10..191 | 97 | <- | Plus |
arm_2R | 5734578..5735143 | 192..757 | 100 | <- | Plus |
BS06724.5prime Sequence
792 bp (791 high quality bases) assembled on 2005-12-04
> BS06724.5prime
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTGGGACGAAGTAGA
GGGGCCACAGCTCTACAAGATCGAGCCGTCCGGCTCCTCCTTCGGTTACT
TCGCCTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAG
AAGCTCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGA
AATCATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCG
AAATGGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCC
TCAGAACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGA
CGAAGACAGCGACAATGAGACGCACTAGAAGCTTTCTAGACC
BS06724.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1519-PA | 762 | Prosalpha7-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
CG1519-PB | 708 | Prosalpha7-RB | 1..421 | 17..437 | 2105 | 100 | Plus |
CG1519-PB | 708 | Prosalpha7-RB | 416..708 | 486..778 | 1465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..881 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847073..9847638 | 603..38 | 2830 | 100 | Minus |
2R | 25286936 | 2R | 9846731..9846905 | 778..604 | 875 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 526..575 | 136 | 80 | Plus |
BS06724.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:09 Download gff for
BS06724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:15 Download gff for
BS06724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:36 Download gff for
BS06724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..887 | 8..785 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:37 Download gff for
BS06724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..887 | 8..785 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:37 Download gff for
BS06724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846724..9846905 | 604..785 | 97 | <- | Minus |
2R | 9847073..9847638 | 38..603 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:36 Download gff for
BS06724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734229..5734410 | 604..785 | 97 | <- | Minus |
arm_2R | 5734578..5735143 | 38..603 | 100 | <- | Minus |
BS06724.complete Sequence
794 bp (794 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635598
> BS06724.complete
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTGGGACGAAGTAGA
GGGGCCACAGCTCTACAAGATCGAGCCGTCCGGCTCCTCCTTCGGTTACT
TCGCCTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAG
AAGCTCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGA
AATCATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCG
AAATGGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCC
TCAGAACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGA
CGAAGACAGCGACAATGAGACGCACTAGAAGCTTTCTAGACCAT
BS06724.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 762 | CG1519-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..881 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847073..9847638 | 603..38 | 2830 | 100 | Minus |
2R | 25286936 | 2R | 9846731..9846905 | 778..604 | 875 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 526..575 | 136 | 80 | Plus |
BS06724.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:14 Download gff for
BS06724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:32 Download gff for
BS06724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 110..885 | 8..785 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:06 Download gff for
BS06724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 120..881 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:14 Download gff for
BS06724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 110..885 | 8..785 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:59 Download gff for
BS06724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 120..881 | 17..778 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:59 Download gff for
BS06724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846731..9846905 | 604..778 | 100 | <- | Minus |
2R | 9847073..9847638 | 38..603 | 100 | <- | Minus |
2R | 9847697..9847717 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:06 Download gff for
BS06724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734236..5734410 | 604..778 | 100 | <- | Minus |
arm_2R | 5734578..5735143 | 38..603 | 100 | <- | Minus |
arm_2R | 5735202..5735222 | 17..37 | 100 | | Minus |
BS06724.pep Sequence
Translation from 16 to 777
> BS06724.pep
MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAV
EKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYR
QQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLY
KIEPSGSSFGYFACASGKAKQLAKTEMEKLKMDMRTDELVESAGEIIYKV
HDELKDKDFRFEMGLVGRVTGGLHLINPSELTEKARKAGDAANKDEDSDN
ETH*
BS06724.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-PA | 253 | CG1519-PA | 1..253 | 1..253 | 1291 | 100 | Plus |
Prosalpha1-PB | 244 | CG18495-PB | 8..242 | 7..240 | 317 | 30.5 | Plus |
Prosalpha1-PA | 244 | CG18495-PA | 8..242 | 7..240 | 317 | 30.5 | Plus |
CG30382-PB | 244 | CG30382-PB | 8..242 | 7..240 | 317 | 30.5 | Plus |
CG30382-PA | 244 | CG30382-PA | 8..242 | 7..240 | 317 | 30.5 | Plus |