Clone BS06724 Report

Search the DGRC for BS06724

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptProsalpha7-RA
Protein status:BS06724.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06724.3prime Sequence

792 bp (791 high quality bases) assembled on 2005-12-04

> BS06724.3prime
ATGGTCTAGAAAGCTTCTAGTGCGTCTCATTGTCGCTGTCTTCGTCCTTG
TTGGCCGCATCGCCGGCTTTCCTCGCCTTCTCCGTCAGTTCTGAGGGATT
TATGAGATGTAGGCCACCGGTTACCCTGCCCACCAAACCCATTTCGAAGC
GGAAGTCCTTGTCCTTCAACTCGTCATGGACTTTGTAGATGATTTCACCA
GCGCTCTCCACCAATTCGTCGGTCCTCATATCCATCTTGAGCTTCTCCAT
CTCAGTCTTGGCCAGCTGCTTGGCCTTGCCGCTGGCGCAGGCGAAGTAAC
CGAAGGAGGAGCCGGACGGCTCGATCTTGTAGAGCTGTGGCCCCTCTACT
TCGTCCCAGGAGGCGAGAATGATGGAAAGTCCGAAGGGGCGGACGGCACT
GTACAGAGTGTAGGCGTGAACGTAGCCGGCGACTCGGTGGCACAGGTGTT
TAAGCGGGATAGCCTGCTCAAATTGCTGTCTGTAGTTGGCTGCCTCCTGA
CGCGCAATGTCAGCCACAAAGTTTCCATCGGCCACCAAGCCGGCCACCGC
CATTCCGATGTTCTTTTCGATGGTGAAGATGCGTCCGCCGGCGTCTGGTT
CGTACAGTTTACTGGTGATGATCTTCTCCACGGCCAGCACCACGGCGTCC
TTGCCCCGAATCCCGATTACGGTGCCGCTCTTCTCCACCGCCTTTGAGGC
GTAGTCGATCTGGAAAACGCGGCCATCAGGCGAAAACTGCGAGGCCGACA
AGTCGTATCCAGTGCCAATAGTACTCATGTCGACTGATAACT

BS06724.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1519-PA 762 Prosalpha7-RA 1..762 778..17 3810 100 Minus
CG1519-PB 708 Prosalpha7-RB 1..421 778..358 2105 100 Minus
CG1519-PB 708 Prosalpha7-RB 416..708 309..17 1465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..881 778..17 3810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847073..9847638 192..757 2830 100 Plus
2R 25286936 2R 9846731..9846905 17..191 875 100 Plus
Blast to na_te.dros performed 2015-02-10 21:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 269..220 136 80 Minus

BS06724.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:08 Download gff for BS06724.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1519-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:14 Download gff for BS06724.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1519-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:42:05 Download gff for BS06724.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..887 10..787 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:18 Download gff for BS06724.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..887 10..787 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:18 Download gff for BS06724.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9846724..9846905 10..191 97 <- Plus
2R 9847073..9847638 192..757 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:42:05 Download gff for BS06724.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734229..5734410 10..191 97 <- Plus
arm_2R 5734578..5735143 192..757 100 <- Plus

BS06724.5prime Sequence

792 bp (791 high quality bases) assembled on 2005-12-04

> BS06724.5prime
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTGGGACGAAGTAGA
GGGGCCACAGCTCTACAAGATCGAGCCGTCCGGCTCCTCCTTCGGTTACT
TCGCCTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAG
AAGCTCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGA
AATCATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCG
AAATGGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCC
TCAGAACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGA
CGAAGACAGCGACAATGAGACGCACTAGAAGCTTTCTAGACC

BS06724.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1519-PA 762 Prosalpha7-RA 1..762 17..778 3810 100 Plus
CG1519-PB 708 Prosalpha7-RB 1..421 17..437 2105 100 Plus
CG1519-PB 708 Prosalpha7-RB 416..708 486..778 1465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..881 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847073..9847638 603..38 2830 100 Minus
2R 25286936 2R 9846731..9846905 778..604 875 100 Minus
Blast to na_te.dros performed 2015-02-12 00:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 526..575 136 80 Plus

BS06724.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:09 Download gff for BS06724.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1519-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:15 Download gff for BS06724.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1519-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:36 Download gff for BS06724.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..887 8..785 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:37 Download gff for BS06724.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..887 8..785 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:37 Download gff for BS06724.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9846724..9846905 604..785 97 <- Minus
2R 9847073..9847638 38..603 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:36 Download gff for BS06724.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734229..5734410 604..785 97 <- Minus
arm_2R 5734578..5735143 38..603 100 <- Minus

BS06724.complete Sequence

794 bp (794 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635598

> BS06724.complete
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTGGGACGAAGTAGA
GGGGCCACAGCTCTACAAGATCGAGCCGTCCGGCTCCTCCTTCGGTTACT
TCGCCTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAG
AAGCTCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGA
AATCATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCG
AAATGGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCC
TCAGAACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGA
CGAAGACAGCGACAATGAGACGCACTAGAAGCTTTCTAGACCAT

BS06724.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 762 CG1519-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..881 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847073..9847638 603..38 2830 100 Minus
2R 25286936 2R 9846731..9846905 778..604 875 100 Minus
Blast to na_te.dros performed 2014-11-26 21:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 526..575 136 80 Plus

BS06724.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:14 Download gff for BS06724.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:32 Download gff for BS06724.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 110..885 8..785 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:06 Download gff for BS06724.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 120..881 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:14 Download gff for BS06724.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 110..885 8..785 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:59 Download gff for BS06724.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 120..881 17..778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:59 Download gff for BS06724.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9846731..9846905 604..778 100 <- Minus
2R 9847073..9847638 38..603 100 <- Minus
2R 9847697..9847717 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:06 Download gff for BS06724.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734236..5734410 604..778 100 <- Minus
arm_2R 5734578..5735143 38..603 100 <- Minus
arm_2R 5735202..5735222 17..37 100   Minus

BS06724.pep Sequence

Translation from 16 to 777

> BS06724.pep
MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAV
EKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYR
QQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLY
KIEPSGSSFGYFACASGKAKQLAKTEMEKLKMDMRTDELVESAGEIIYKV
HDELKDKDFRFEMGLVGRVTGGLHLINPSELTEKARKAGDAANKDEDSDN
ETH*

BS06724.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-PA 253 CG1519-PA 1..253 1..253 1291 100 Plus
Prosalpha1-PB 244 CG18495-PB 8..242 7..240 317 30.5 Plus
Prosalpha1-PA 244 CG18495-PA 8..242 7..240 317 30.5 Plus
CG30382-PB 244 CG30382-PB 8..242 7..240 317 30.5 Plus
CG30382-PA 244 CG30382-PA 8..242 7..240 317 30.5 Plus