Clone BS06725 Report

Search the DGRC for BS06725

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG6443-RA
Protein status:BS06725.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06725.3prime Sequence

870 bp (836 high quality bases) assembled on 2005-12-04

> BS06725.3prime
ATGGTCTAGAAAGCTTCTAATTGTAGAATGGATTATAGGTGACCCAGTGG
GCGCGCTCCTGGTCCTTTTCGGTTTTATGGGAGGTGAAAAGGGACTTGTA
AACATCGCTGGCCTTCGGGTCCTTGGCCACGCTGAAGTCGCTCTTGAGAC
GCTTCAGTTCGGGATCCTGCATTGCATTAACGGCGCCCAGTCGTTTGACC
GGCGCCACCGCCTTGGTTTTTGTGCTTGTAGTGGGCTTCTCTGCGGCTGC
AGCCTTGGATGTGGACGCCACTGGCTCCTGTTCCTCTGCGGGCTCCGCTT
TCACCTCCACCTTTTTGGCACTCTTCTTGTCCTTTTTGGAGGACTTACGC
TTGGCCGCACGCATTTCCATCTTGACCCGCATGAGCTCCATGTCCTCCTC
GTTGCCATTGAGGACCACCACGTCCTCAACGCTATAGGCAGCCTGGCACA
GCGGACAAGTGCTAGCCACACTGCCTTTGATCTGTTTCAAGGCACGCTCT
GATAAAACGCATCCGCAGCTCCAAAGGGCCACAAAGCGAAATTTGCCGGA
CATCTCCAGGCCAATCAGCTTGCAGATGTAAGGAGAATGTCGTGTGTCCA
GCAGTCCCTCAGTTTTGTCCTCCTCGGTGAAGGCGGGATTGGGTGTGGGA
TTAAGCTGGCGAATGTCCTTCATGCTCTTCACGTGCGCAGCTGTCTCTGG
CATCGGTTCCTTCTCCAGCAGTCGCTCAATGACGCTCTGCTTGGAATAGA
GCCTACCCATGCCGCACATGGCGATCGGCTCCTGGAGGCTTTGCTGGGTC
AAGGTGCAGTGGCGCCAACGGAACTCCCTCTCCGCATCTTTGTCTTTCTG
CTCTGGCTTTTGCTTCACGC

BS06725.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-PA 900 CG6443-RA 47..900 870..17 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-RA 1184 CG6443-RA 231..1084 870..17 4270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10729369..10730202 850..17 4170 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:37:38 has no hits.

BS06725.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:10 Download gff for BS06725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6443-PA 47..900 17..870 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:17 Download gff for BS06725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6443-PA 47..900 17..870 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:14:12 Download gff for BS06725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 231..1094 9..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:33 Download gff for BS06725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 231..1094 9..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:33 Download gff for BS06725.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10729286..10729308 848..870 100 -> Minus
2L 10729372..10730212 9..847 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:14:12 Download gff for BS06725.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10729286..10729308 848..870 100 -> Minus
arm_2L 10729372..10730212 9..847 99   Minus

BS06725.5prime Sequence

862 bp (816 high quality bases) assembled on 2005-12-04

> BS06725.5prime
GAAGTTATCAGTCGACATGGGTTGCGATGGAGGAACTATTCCCAGGCGCG
ATGAGCTGGTGCGCGTGAAGCAAAAGCCAGAGCAGAAAGACAAAGATGCG
GAGAGGGAGTTCCGTTGGCGCCACTGCACCTTGACCCAGCAAAGCCTCCA
GGAGCCGATCGCCATGTGCGGCATGGGTAGGCTCTATTCCAAGCAGAGCG
TCATTGAGCGACTGCTGGAGAAGGAACCGATGCCAGAGACAGCTGCGCAC
GTGAAGAGCATGAAGGACATTCGCCAGCTTAATCCCACACCCAATCCCGC
CTTCACCGAGGAGGACAAAACTGAGGGACTGCTGGACACACGACATTCTC
CTTACATCTGCAAGCTGATTGGCCTGGAGATGTCCGGCAAATTTCGCTTT
GTGGCCCTTTGGAGCTGCGGATGCGTTTTATCAGAGCGTGCCTTGAAACA
GATCAAAGGCAGTGTGGCTAGCACTTGTCCGCTGTGCCAGGCTGCCTATA
GCGTTGAGGACGTGGTGGTCCTCAATGGCAACGAGGAGGACATGGAGCTC
ATGCGGGTCAAGATGGAAATGCGTGCGGCCAAGCGTAAGTCCTCCAAAAA
GGACAAGAAGAGTGCCAAAAAGGTGGAGGTGAAAGCGGAGCCCGCAGAGG
AACAGGAGCCAGTGGCGTCCACATCCAAGGCTGCAGCCGCAGAGAAGCCC
ACTACAAGCACAAAAACCAAGGCGGTGGCGCCGGTCAAACGACTGGGCGC
CGTTAATGCAATGCAGGATCCCGAACTGAAGCGTCTCAAGAGCGACTTCA
GCGTGGCCAAGGACCCGAAGGCCAGCGATGTTTACAAGTCCCTTTTCACC
TCCCATAAAACC

BS06725.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-PA 900 CG6443-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-RA 1184 CG6443-RA 184..1030 16..862 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10729369..10730148 83..862 3900 100 Plus
2L 23513712 2L 10729239..10729308 16..85 350 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:29:27 has no hits.

BS06725.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:11 Download gff for BS06725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6443-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:17 Download gff for BS06725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6443-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:05 Download gff for BS06725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 184..1030 16..862 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:43:03 Download gff for BS06725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 184..1030 16..862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:43:03 Download gff for BS06725.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10729239..10729308 16..85 100 -> Plus
2L 10729372..10730148 86..862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:05 Download gff for BS06725.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10729239..10729308 16..85 100 -> Plus
arm_2L 10729372..10730148 86..862 100   Plus

BS06725.complete Sequence

932 bp (932 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635599

> BS06725.complete
GAAGTTATCAGTCGACATGGGTTGCGATGGAGGAACTATTCCCAGGCGCG
ATGAGCTGGTGCGCGTGAAGCAAAAGCCAGAGCAGAAAGACAAAGATGCG
GAGAGGGAGTTCCGTTGGCGCCACTGCACCTTGACCCAGCAAAGCCTCCA
GGAGCCGATCGCCATGTGCGGCATGGGTAGGCTCTATTCCAAGCAGAGCG
TCATTGAGCGACTGCTGGAGAAGGAACCGATGCCAGAGACAGCTGCGCAC
GTGAAGAGCATGAAGGACATTCGCCAGCTTAATCCCACACCCAATCCCGC
CTTCACCGAGGAGGACAAAACTGAGGGACTGCTGGACACACGACATTCTC
CTTACATCTGCAAGCTGATTGGCCTGGAGATGTCCGGCAAATTTCGCTTT
GTGGCCCTTTGGAGCTGCGGATGCGTTTTATCAGAGCGTGCCTTGAAACA
GATCAAAGGCAGTGTGGCTAGCACTTGTCCGCTGTGCCAGGCTGCCTATA
GCGTTGAGGACGTGGTGGTCCTCAATGGCAACGAGGAGGACATGGAGCTC
ATGCGGGTCAAGATGGAAATGCGTGCGGCCAAGCGTAAGTCCTCCAAAAA
GGACAAGAAGAGTGCCAAAAAGGTGGAGGTGAAAGCGGAGCCCGCAGAGG
AACAGGAGCCAGTGGCGTCCACATCCAAGGCTGCAGCCGCAGAGAAGCCC
ACTACAAGCACAAAAACCAAGGCGGTGGCGCCGGTCAAACGACTGGGCGC
CGTTAATGCAATGCAGGATCCCGAACTGAAGCGTCTCAAGAGCGACTTCA
GCGTGGCCAAGGACCCGAAGGCCAGCGATGTTTACAAGTCCCTTTTCACC
TCCCATAAAACCGAAAAGGACCAGGAGCGCGCCCACTGGGTCACCTATAA
TCCATTCTACAATTAGAAGCTTTCTAGACCAT

BS06725.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-RA 900 CG6443-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-RA 1184 CG6443-RA 184..1084 16..916 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10729369..10730202 83..916 4170 100 Plus
2L 23513712 2L 10729239..10729308 16..85 350 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:51:38 has no hits.

BS06725.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:08 Download gff for BS06725.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:57 Download gff for BS06725.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 187..1097 16..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:18 Download gff for BS06725.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 185..1084 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:08 Download gff for BS06725.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 187..1097 16..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:34 Download gff for BS06725.complete
Subject Subject Range Query Range Percent Splice Strand
CG6443-RA 185..1084 17..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:34 Download gff for BS06725.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10729240..10729308 17..85 100 -> Plus
2L 10729372..10730202 86..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:18 Download gff for BS06725.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10729240..10729308 17..85 100 -> Plus
arm_2L 10729372..10730202 86..916 100   Plus

BS06725.pep Sequence

Translation from 16 to 915

> BS06725.pep
MGCDGGTIPRRDELVRVKQKPEQKDKDAEREFRWRHCTLTQQSLQEPIAM
CGMGRLYSKQSVIERLLEKEPMPETAAHVKSMKDIRQLNPTPNPAFTEED
KTEGLLDTRHSPYICKLIGLEMSGKFRFVALWSCGCVLSERALKQIKGSV
ASTCPLCQAAYSVEDVVVLNGNEEDMELMRVKMEMRAAKRKSSKKDKKSA
KKVEVKAEPAEEQEPVASTSKAAAAEKPTTSTKTKAVAPVKRLGAVNAMQ
DPELKRLKSDFSVAKDPKASDVYKSLFTSHKTEKDQERAHWVTYNPFYN*

BS06725.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6443-PA 299 CG6443-PA 1..299 1..299 1549 100 Plus