Clone Sequence Records
BS06725.3prime Sequence
870 bp (836 high quality bases) assembled on 2005-12-04
> BS06725.3prime
ATGGTCTAGAAAGCTTCTAATTGTAGAATGGATTATAGGTGACCCAGTGG
GCGCGCTCCTGGTCCTTTTCGGTTTTATGGGAGGTGAAAAGGGACTTGTA
AACATCGCTGGCCTTCGGGTCCTTGGCCACGCTGAAGTCGCTCTTGAGAC
GCTTCAGTTCGGGATCCTGCATTGCATTAACGGCGCCCAGTCGTTTGACC
GGCGCCACCGCCTTGGTTTTTGTGCTTGTAGTGGGCTTCTCTGCGGCTGC
AGCCTTGGATGTGGACGCCACTGGCTCCTGTTCCTCTGCGGGCTCCGCTT
TCACCTCCACCTTTTTGGCACTCTTCTTGTCCTTTTTGGAGGACTTACGC
TTGGCCGCACGCATTTCCATCTTGACCCGCATGAGCTCCATGTCCTCCTC
GTTGCCATTGAGGACCACCACGTCCTCAACGCTATAGGCAGCCTGGCACA
GCGGACAAGTGCTAGCCACACTGCCTTTGATCTGTTTCAAGGCACGCTCT
GATAAAACGCATCCGCAGCTCCAAAGGGCCACAAAGCGAAATTTGCCGGA
CATCTCCAGGCCAATCAGCTTGCAGATGTAAGGAGAATGTCGTGTGTCCA
GCAGTCCCTCAGTTTTGTCCTCCTCGGTGAAGGCGGGATTGGGTGTGGGA
TTAAGCTGGCGAATGTCCTTCATGCTCTTCACGTGCGCAGCTGTCTCTGG
CATCGGTTCCTTCTCCAGCAGTCGCTCAATGACGCTCTGCTTGGAATAGA
GCCTACCCATGCCGCACATGGCGATCGGCTCCTGGAGGCTTTGCTGGGTC
AAGGTGCAGTGGCGCCAACGGAACTCCCTCTCCGCATCTTTGTCTTTCTG
CTCTGGCTTTTGCTTCACGC
BS06725.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-PA | 900 | CG6443-RA | 47..900 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-RA | 1184 | CG6443-RA | 231..1084 | 870..17 | 4270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10729369..10730202 | 850..17 | 4170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:37:38 has no hits.
BS06725.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:10 Download gff for
BS06725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-PA | 47..900 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:17 Download gff for
BS06725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-PA | 47..900 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:14:12 Download gff for
BS06725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 231..1094 | 9..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:33 Download gff for
BS06725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 231..1094 | 9..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:33 Download gff for
BS06725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10729286..10729308 | 848..870 | 100 | -> | Minus |
2L | 10729372..10730212 | 9..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:14:12 Download gff for
BS06725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10729286..10729308 | 848..870 | 100 | -> | Minus |
arm_2L | 10729372..10730212 | 9..847 | 99 | | Minus |
BS06725.5prime Sequence
862 bp (816 high quality bases) assembled on 2005-12-04
> BS06725.5prime
GAAGTTATCAGTCGACATGGGTTGCGATGGAGGAACTATTCCCAGGCGCG
ATGAGCTGGTGCGCGTGAAGCAAAAGCCAGAGCAGAAAGACAAAGATGCG
GAGAGGGAGTTCCGTTGGCGCCACTGCACCTTGACCCAGCAAAGCCTCCA
GGAGCCGATCGCCATGTGCGGCATGGGTAGGCTCTATTCCAAGCAGAGCG
TCATTGAGCGACTGCTGGAGAAGGAACCGATGCCAGAGACAGCTGCGCAC
GTGAAGAGCATGAAGGACATTCGCCAGCTTAATCCCACACCCAATCCCGC
CTTCACCGAGGAGGACAAAACTGAGGGACTGCTGGACACACGACATTCTC
CTTACATCTGCAAGCTGATTGGCCTGGAGATGTCCGGCAAATTTCGCTTT
GTGGCCCTTTGGAGCTGCGGATGCGTTTTATCAGAGCGTGCCTTGAAACA
GATCAAAGGCAGTGTGGCTAGCACTTGTCCGCTGTGCCAGGCTGCCTATA
GCGTTGAGGACGTGGTGGTCCTCAATGGCAACGAGGAGGACATGGAGCTC
ATGCGGGTCAAGATGGAAATGCGTGCGGCCAAGCGTAAGTCCTCCAAAAA
GGACAAGAAGAGTGCCAAAAAGGTGGAGGTGAAAGCGGAGCCCGCAGAGG
AACAGGAGCCAGTGGCGTCCACATCCAAGGCTGCAGCCGCAGAGAAGCCC
ACTACAAGCACAAAAACCAAGGCGGTGGCGCCGGTCAAACGACTGGGCGC
CGTTAATGCAATGCAGGATCCCGAACTGAAGCGTCTCAAGAGCGACTTCA
GCGTGGCCAAGGACCCGAAGGCCAGCGATGTTTACAAGTCCCTTTTCACC
TCCCATAAAACC
BS06725.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-PA | 900 | CG6443-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-RA | 1184 | CG6443-RA | 184..1030 | 16..862 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10729369..10730148 | 83..862 | 3900 | 100 | Plus |
2L | 23513712 | 2L | 10729239..10729308 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:29:27 has no hits.
BS06725.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:11 Download gff for
BS06725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:17 Download gff for
BS06725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:05 Download gff for
BS06725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 184..1030 | 16..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:43:03 Download gff for
BS06725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 184..1030 | 16..862 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:43:03 Download gff for
BS06725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10729239..10729308 | 16..85 | 100 | -> | Plus |
2L | 10729372..10730148 | 86..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:05 Download gff for
BS06725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10729239..10729308 | 16..85 | 100 | -> | Plus |
arm_2L | 10729372..10730148 | 86..862 | 100 | | Plus |
BS06725.complete Sequence
932 bp (932 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635599
> BS06725.complete
GAAGTTATCAGTCGACATGGGTTGCGATGGAGGAACTATTCCCAGGCGCG
ATGAGCTGGTGCGCGTGAAGCAAAAGCCAGAGCAGAAAGACAAAGATGCG
GAGAGGGAGTTCCGTTGGCGCCACTGCACCTTGACCCAGCAAAGCCTCCA
GGAGCCGATCGCCATGTGCGGCATGGGTAGGCTCTATTCCAAGCAGAGCG
TCATTGAGCGACTGCTGGAGAAGGAACCGATGCCAGAGACAGCTGCGCAC
GTGAAGAGCATGAAGGACATTCGCCAGCTTAATCCCACACCCAATCCCGC
CTTCACCGAGGAGGACAAAACTGAGGGACTGCTGGACACACGACATTCTC
CTTACATCTGCAAGCTGATTGGCCTGGAGATGTCCGGCAAATTTCGCTTT
GTGGCCCTTTGGAGCTGCGGATGCGTTTTATCAGAGCGTGCCTTGAAACA
GATCAAAGGCAGTGTGGCTAGCACTTGTCCGCTGTGCCAGGCTGCCTATA
GCGTTGAGGACGTGGTGGTCCTCAATGGCAACGAGGAGGACATGGAGCTC
ATGCGGGTCAAGATGGAAATGCGTGCGGCCAAGCGTAAGTCCTCCAAAAA
GGACAAGAAGAGTGCCAAAAAGGTGGAGGTGAAAGCGGAGCCCGCAGAGG
AACAGGAGCCAGTGGCGTCCACATCCAAGGCTGCAGCCGCAGAGAAGCCC
ACTACAAGCACAAAAACCAAGGCGGTGGCGCCGGTCAAACGACTGGGCGC
CGTTAATGCAATGCAGGATCCCGAACTGAAGCGTCTCAAGAGCGACTTCA
GCGTGGCCAAGGACCCGAAGGCCAGCGATGTTTACAAGTCCCTTTTCACC
TCCCATAAAACCGAAAAGGACCAGGAGCGCGCCCACTGGGTCACCTATAA
TCCATTCTACAATTAGAAGCTTTCTAGACCAT
BS06725.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-RA | 900 | CG6443-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-RA | 1184 | CG6443-RA | 184..1084 | 16..916 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10729369..10730202 | 83..916 | 4170 | 100 | Plus |
2L | 23513712 | 2L | 10729239..10729308 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:51:38 has no hits.
BS06725.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:08 Download gff for
BS06725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:57 Download gff for
BS06725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 187..1097 | 16..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:18 Download gff for
BS06725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 185..1084 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:08 Download gff for
BS06725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 187..1097 | 16..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:34 Download gff for
BS06725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 185..1084 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:34 Download gff for
BS06725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10729240..10729308 | 17..85 | 100 | -> | Plus |
2L | 10729372..10730202 | 86..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:18 Download gff for
BS06725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10729240..10729308 | 17..85 | 100 | -> | Plus |
arm_2L | 10729372..10730202 | 86..916 | 100 | | Plus |
BS06725.pep Sequence
Translation from 16 to 915
> BS06725.pep
MGCDGGTIPRRDELVRVKQKPEQKDKDAEREFRWRHCTLTQQSLQEPIAM
CGMGRLYSKQSVIERLLEKEPMPETAAHVKSMKDIRQLNPTPNPAFTEED
KTEGLLDTRHSPYICKLIGLEMSGKFRFVALWSCGCVLSERALKQIKGSV
ASTCPLCQAAYSVEDVVVLNGNEEDMELMRVKMEMRAAKRKSSKKDKKSA
KKVEVKAEPAEEQEPVASTSKAAAAEKPTTSTKTKAVAPVKRLGAVNAMQ
DPELKRLKSDFSVAKDPKASDVYKSLFTSHKTEKDQERAHWVTYNPFYN*
BS06725.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-PA | 299 | CG6443-PA | 1..299 | 1..299 | 1549 | 100 | Plus |