Clone BS06731 Report

Search the DGRC for BS06731

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptSpn43Aa-RA
Protein status:BS06731.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06731.3prime Sequence

908 bp (861 high quality bases) assembled on 2005-12-04

> BS06731.3prime
ATGGTCTAGAAAGCTTTTAAAACTTGACAATGTGTCCGGTGAAATAGACA
GCGTGCTTGTCGCGAATGATGAACGCAAATGGATGATCGGCCACGAAAGT
CTTGGGGTCCAGGGGCAGGGACATGGGAACTCCGGCAGCATAACTAGCTC
CAGCCGCCTCACATCCGATCTCGTTCACATCGATGAAGGTCTTGTGCTGC
ACCTTTGTGATCCGAGTGCCGATGGGCGAGTCCTGGAAAATGTTGCTGAA
GTCGGCTGCATCTGAGAACATGGCACTGATTCCCATCTTATGCAATGTGG
GTCTTAGGTCCGTGTCGAACTCGAACTTGAACTTGGGCAGGTAAACGGAC
ACACTCTGCCACTGCCAGCGGTCTTCGAGCAGATTGAAGTCGACGCCCTT
GAGCTTCTGCTCCAGAGCCTGTAGTCCGGAACGCTGGTTGGGCAGGATGA
ACCACATGGTCAGGTTGATGTTTTCGAAGAACAGCTCAATGGCCTTGGCG
TCGAGTTCCGGGTAGTCGGCGTAGTAGTACCAGTTGTCTGCGAACATGGT
TGGCACCTGGATGGACCGGCTCTCGCTCAGCCAGAACTCGCGATCCCGGG
TATCCTCGTCGTTGAAGGGTCGTGCCCAGCGAGCCTTGAAGTAGATGGCG
TTGACCAGCGCCACATTGGTGTCCGGCTCCAGGCTTTCCACCACCCGTTC
GATCTTGTTCTCCGTCTGCTGCTTCACCCAGCGGTTGATCTGCTCCACGG
CCTCCGTTTCGCGACTGAAGTCCAGTGGTTCTACCTCGGAGTCGAAGTAC
TTCTGGGCCACCTCTCGGAAGTGGCTAGATACCGTGAGATTCTGCCGGGT
GTACACCTTGTTGGCGATCTCCACACGGTCTTGGACTTGATGTAAGAGTG
CAGCAAGG

BS06731.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12172-PA 1173 Spn43Aa-RA 317..1173 873..17 4285 100 Minus
CG12172-PA 1173 Spn43Aa-RA 284..316 905..873 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Spn43Aa-RA 1294 CG12172-RA 320..1209 905..17 4425 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7148075..7148694 905..287 3050 99.8 Minus
2R 25286936 2R 7148873..7149019 288..142 735 100 Minus
2R 25286936 2R 7149080..7149204 141..17 625 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:51:16 has no hits.

BS06731.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:23 Download gff for BS06731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12172-PA 282..1173 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:35 Download gff for BS06731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12172-PA 282..1173 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:48:02 Download gff for BS06731.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn43Aa-RA 318..1209 17..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:17 Download gff for BS06731.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn43Aa-RA 318..1209 17..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:17 Download gff for BS06731.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7148073..7148694 287..908 99 -> Minus
2R 7148875..7149019 142..286 100 -> Minus
2R 7149080..7149206 14..141 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:48:02 Download gff for BS06731.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3035578..3036199 287..908 99 -> Minus
arm_2R 3036380..3036524 142..286 100 -> Minus
arm_2R 3036585..3036711 14..141 97 -> Minus

BS06731.5prime Sequence

912 bp (828 high quality bases) assembled on 2005-12-04

> BS06731.5prime
GAAGTTATCAGTCGACATGAACCACTGGCTAAGTATCATTCTTCTTGGGG
TGTGGATATCCGCTCCTGAAGGTCTGGGTAACACGATCAAGGATCGCAAT
CTCTTCGCCACCGAACTCTTCCAAACCCTCGCCACAGATCGCCAGGATGA
GAACGTGATCATCTCGCCGGTTTCCATCCAGCTGGCCCTCGGGTTGGCTT
ACTACGGAGCTGAGGGCAGGACGGCCGCGGAACTGCAGAAGACCTTGCAC
GCCTCCGCCAAGGAGAGCAAAGATGGTCTGGCCGAGAGCTACCACAACCT
GCTGCACTCTTACATCAAGTCCAAGACCGTGTTGGAGATCGCCAACAAGG
TGTACACCCGGCAGAATCTCACGGTATCTAGCCACTTCCGAGAGGTGGCC
CAGAAGTACTTCGACTCCGAGGTAGAACCACTGGACTTCAGTCGCGAAAC
GGAGGCCGTGGAGCAGATCAACCGCTGGGTGAAGCAGCAGACGGAGAACA
AGATCGAACGGGTGGTGGAAAGCCTGGAGCCGGACACCAATGTGGCGCTG
GTCAACGCCATCTACTTCAAGGCTCGCTGGGCACGACCCTTCAACGACGA
GGATACCCGGGATCGCGAGTTCTGGCTGAGCGAGAGCCGGTCCATCCAGG
TGCCAACCATGTTCGCAGACAACTGGTACTACTACGCCGACTACCCGGAA
CTCGACGCCAAGGCCATTGAGCTGTTCTTCGAAAACATCAACCTGACCAT
GTGGTTCATCCTGCCCAACCAGCGTTCCGGACTACAGGCTCTGGAGCAGA
AGCTCAAGGGCGTCGACTTCAATCTGCTCGAAGACCGCTGGCAGTGGCAG
AGTGTGTCCGTTTACCTGCCAAAGTTCAAGTCGAGTTCGACACGGACCTA
AGACCACATTGC

BS06731.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12172-PA 1173 Spn43Aa-RA 1..865 17..881 4300 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Spn43Aa-RA 1294 CG12172-RA 37..934 17..912 4425 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7147811..7148681 36..905 4290 99.8 Plus
Blast to na_te.dros performed on 2015-02-13 08:29:21 has no hits.

BS06731.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:23 Download gff for BS06731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12172-PA 1..898 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:37 Download gff for BS06731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12172-PA 1..898 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:03 Download gff for BS06731.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn43Aa-RA 29..934 9..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:42:14 Download gff for BS06731.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn43Aa-RA 29..934 9..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:42:14 Download gff for BS06731.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7147811..7148689 36..912 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:03 Download gff for BS06731.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3035316..3036194 36..912 99   Plus

BS06731.complete Sequence

1205 bp (1205 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635600

> BS06731.complete
GAAGTTATCAGTCGACATGAACCACTGGCTAAGTATCATTCTTCTTGGGG
TGTGGATATCCGCTCCTGAAGGTCTGGGTAACACGATCAAGGATCGCAAT
CTCTTCGCCACCGAACTCTTCCAAACCCTCGCCACAGATCGCCAGGATGA
GAACGTGATCATCTCGCCGGTTTCCATCCAGCTGGCCCTCGGGTTGGCTT
ACTACGGAGCTGAGGGCAGGACGGCCGCGGAACTGCAGAAGACCTTGCAC
GCCTCCGCCAAGGAGAGCAAAGATGGTCTGGCCGAGAGCTACCACAACCT
GCTGCACTCTTACATCAAGTCCAAGACCGTGTTGGAGATCGCCAACAAGG
TGTACACCCGGCAGAATCTCACGGTATCTAGCCACTTCCGAGAGGTGGCC
CAGAAGTACTTCGACTCCGAGGTAGAACCACTGGACTTCAGTCGCGAAAC
GGAGGCCGTGGAGCAGATCAACCGCTGGGTGAAGCAGCAGACGGAGAACA
AGATCGAACGGGTGGTGGAAAGCCTGGAGCCGGACACCAATGTGGCGCTG
GTCAACGCCATCTACTTCAAGGCTCGCTGGGCACGACCCTTCAACGACGA
GGATACCCGGGATCGCGAGTTCTGGCTGAGCGAGAGCCGGTCCATCCAGG
TGCCAACCATGTTCGCAGACAACTGGTACTACTACGCCGACTACCCGGAA
CTCGACGCCAAGGCCATTGAGCTGTTCTTCGAAAACATCAACCTGACCAT
GTGGTTCATCCTGCCCAACCAGCGTTCCGGACTACAGGCTCTGGAGCAGA
AGCTCAAGGGCGTCGACTTCAATCTGCTCGAAGACCGCTGGCAGTGGCAG
AGTGTGTCCGTTTACCTGCCCAAGTTCAAGTTCGAGTTCGACACGGACCT
AAGACCCACATTGCATAAGATGGGAATCAGTGCCATGTTCTCAGATGCAG
CCGACTTCAGCAACATTTTCCAGGACTCGCCCATCGGCACTCGGATCACA
AAGGTGCAGCACAAGACCTTCATCGATGTGAACGAGATCGGATGTGAGGC
GGCTGGAGCTAGTTATGCTGCCGGAGTTCCCATGTCCCTGCCCCTGGACC
CCAAGACTTTCGTGGCCGATCATCCATTTGCGTTCATCATTCGCGACAAG
CACGCTGTCTATTTCACCGGACACATTGTCAAGTTTTAAAAGCTTTCTAG
ACCAT

BS06731.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Spn43Aa-RA 1173 CG12172-PA 1..1173 17..1189 5865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Spn43Aa-RA 1294 CG12172-RA 37..1209 17..1189 5865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7147811..7148694 36..919 4420 100 Plus
2R 25286936 2R 7148873..7149019 918..1064 735 100 Plus
2R 25286936 2R 7149080..7149204 1065..1189 625 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:09:25 has no hits.

BS06731.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:45 Download gff for BS06731.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Aa-RA 1..1173 17..1189 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:35 Download gff for BS06731.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Aa-RA 23..1203 9..1189 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:54 Download gff for BS06731.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Aa-RA 37..1207 17..1187 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:45 Download gff for BS06731.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Aa-RA 23..1203 9..1189 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:59 Download gff for BS06731.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Aa-RA 37..1207 17..1187 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:59 Download gff for BS06731.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7148875..7149019 920..1064 100 -> Plus
2R 7149080..7149202 1065..1187 100   Plus
2R 7147728..7147746 17..35 100 -> Plus
2R 7147811..7148694 36..919 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:54 Download gff for BS06731.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3035233..3035251 17..35 100 -> Plus
arm_2R 3035316..3036199 36..919 100 -> Plus
arm_2R 3036380..3036524 920..1064 100 -> Plus
arm_2R 3036585..3036707 1065..1187 100   Plus

BS06731.pep Sequence

Translation from 16 to 1188

> BS06731.pep
MNHWLSIILLGVWISAPEGLGNTIKDRNLFATELFQTLATDRQDENVIIS
PVSIQLALGLAYYGAEGRTAAELQKTLHASAKESKDGLAESYHNLLHSYI
KSKTVLEIANKVYTRQNLTVSSHFREVAQKYFDSEVEPLDFSRETEAVEQ
INRWVKQQTENKIERVVESLEPDTNVALVNAIYFKARWARPFNDEDTRDR
EFWLSESRSIQVPTMFADNWYYYADYPELDAKAIELFFENINLTMWFILP
NQRSGLQALEQKLKGVDFNLLEDRWQWQSVSVYLPKFKFEFDTDLRPTLH
KMGISAMFSDAADFSNIFQDSPIGTRITKVQHKTFIDVNEIGCEAAGASY
AAGVPMSLPLDPKTFVADHPFAFIIRDKHAVYFTGHIVKF*

BS06731.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Spn43Aa-PA 390 CG12172-PA 1..390 1..390 2035 100 Plus
Spn42Dc-PB 403 CG9455-PB 8..375 27..385 600 35.4 Plus
Spn42Dc-PA 403 CG9455-PA 8..375 27..385 600 35.4 Plus
Spn42De-PB 386 CG9460-PB 17..383 30..387 588 36 Plus
Spn42De-PA 404 CG9460-PA 35..401 30..387 588 36 Plus