Clone Sequence Records
BS06731.3prime Sequence
908 bp (861 high quality bases) assembled on 2005-12-04
> BS06731.3prime
ATGGTCTAGAAAGCTTTTAAAACTTGACAATGTGTCCGGTGAAATAGACA
GCGTGCTTGTCGCGAATGATGAACGCAAATGGATGATCGGCCACGAAAGT
CTTGGGGTCCAGGGGCAGGGACATGGGAACTCCGGCAGCATAACTAGCTC
CAGCCGCCTCACATCCGATCTCGTTCACATCGATGAAGGTCTTGTGCTGC
ACCTTTGTGATCCGAGTGCCGATGGGCGAGTCCTGGAAAATGTTGCTGAA
GTCGGCTGCATCTGAGAACATGGCACTGATTCCCATCTTATGCAATGTGG
GTCTTAGGTCCGTGTCGAACTCGAACTTGAACTTGGGCAGGTAAACGGAC
ACACTCTGCCACTGCCAGCGGTCTTCGAGCAGATTGAAGTCGACGCCCTT
GAGCTTCTGCTCCAGAGCCTGTAGTCCGGAACGCTGGTTGGGCAGGATGA
ACCACATGGTCAGGTTGATGTTTTCGAAGAACAGCTCAATGGCCTTGGCG
TCGAGTTCCGGGTAGTCGGCGTAGTAGTACCAGTTGTCTGCGAACATGGT
TGGCACCTGGATGGACCGGCTCTCGCTCAGCCAGAACTCGCGATCCCGGG
TATCCTCGTCGTTGAAGGGTCGTGCCCAGCGAGCCTTGAAGTAGATGGCG
TTGACCAGCGCCACATTGGTGTCCGGCTCCAGGCTTTCCACCACCCGTTC
GATCTTGTTCTCCGTCTGCTGCTTCACCCAGCGGTTGATCTGCTCCACGG
CCTCCGTTTCGCGACTGAAGTCCAGTGGTTCTACCTCGGAGTCGAAGTAC
TTCTGGGCCACCTCTCGGAAGTGGCTAGATACCGTGAGATTCTGCCGGGT
GTACACCTTGTTGGCGATCTCCACACGGTCTTGGACTTGATGTAAGAGTG
CAGCAAGG
BS06731.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12172-PA | 1173 | Spn43Aa-RA | 317..1173 | 873..17 | 4285 | 100 | Minus |
CG12172-PA | 1173 | Spn43Aa-RA | 284..316 | 905..873 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn43Aa-RA | 1294 | CG12172-RA | 320..1209 | 905..17 | 4425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7148075..7148694 | 905..287 | 3050 | 99.8 | Minus |
2R | 25286936 | 2R | 7148873..7149019 | 288..142 | 735 | 100 | Minus |
2R | 25286936 | 2R | 7149080..7149204 | 141..17 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:51:16 has no hits.
BS06731.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:23 Download gff for
BS06731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12172-PA | 282..1173 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:35 Download gff for
BS06731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12172-PA | 282..1173 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:48:02 Download gff for
BS06731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn43Aa-RA | 318..1209 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:17 Download gff for
BS06731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn43Aa-RA | 318..1209 | 17..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:17 Download gff for
BS06731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7148073..7148694 | 287..908 | 99 | -> | Minus |
2R | 7148875..7149019 | 142..286 | 100 | -> | Minus |
2R | 7149080..7149206 | 14..141 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:48:02 Download gff for
BS06731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3035578..3036199 | 287..908 | 99 | -> | Minus |
arm_2R | 3036380..3036524 | 142..286 | 100 | -> | Minus |
arm_2R | 3036585..3036711 | 14..141 | 97 | -> | Minus |
BS06731.5prime Sequence
912 bp (828 high quality bases) assembled on 2005-12-04
> BS06731.5prime
GAAGTTATCAGTCGACATGAACCACTGGCTAAGTATCATTCTTCTTGGGG
TGTGGATATCCGCTCCTGAAGGTCTGGGTAACACGATCAAGGATCGCAAT
CTCTTCGCCACCGAACTCTTCCAAACCCTCGCCACAGATCGCCAGGATGA
GAACGTGATCATCTCGCCGGTTTCCATCCAGCTGGCCCTCGGGTTGGCTT
ACTACGGAGCTGAGGGCAGGACGGCCGCGGAACTGCAGAAGACCTTGCAC
GCCTCCGCCAAGGAGAGCAAAGATGGTCTGGCCGAGAGCTACCACAACCT
GCTGCACTCTTACATCAAGTCCAAGACCGTGTTGGAGATCGCCAACAAGG
TGTACACCCGGCAGAATCTCACGGTATCTAGCCACTTCCGAGAGGTGGCC
CAGAAGTACTTCGACTCCGAGGTAGAACCACTGGACTTCAGTCGCGAAAC
GGAGGCCGTGGAGCAGATCAACCGCTGGGTGAAGCAGCAGACGGAGAACA
AGATCGAACGGGTGGTGGAAAGCCTGGAGCCGGACACCAATGTGGCGCTG
GTCAACGCCATCTACTTCAAGGCTCGCTGGGCACGACCCTTCAACGACGA
GGATACCCGGGATCGCGAGTTCTGGCTGAGCGAGAGCCGGTCCATCCAGG
TGCCAACCATGTTCGCAGACAACTGGTACTACTACGCCGACTACCCGGAA
CTCGACGCCAAGGCCATTGAGCTGTTCTTCGAAAACATCAACCTGACCAT
GTGGTTCATCCTGCCCAACCAGCGTTCCGGACTACAGGCTCTGGAGCAGA
AGCTCAAGGGCGTCGACTTCAATCTGCTCGAAGACCGCTGGCAGTGGCAG
AGTGTGTCCGTTTACCTGCCAAAGTTCAAGTCGAGTTCGACACGGACCTA
AGACCACATTGC
BS06731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12172-PA | 1173 | Spn43Aa-RA | 1..865 | 17..881 | 4300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn43Aa-RA | 1294 | CG12172-RA | 37..934 | 17..912 | 4425 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7147811..7148681 | 36..905 | 4290 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:29:21 has no hits.
BS06731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:23 Download gff for
BS06731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12172-PA | 1..898 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:37 Download gff for
BS06731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12172-PA | 1..898 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:16:03 Download gff for
BS06731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn43Aa-RA | 29..934 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:42:14 Download gff for
BS06731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn43Aa-RA | 29..934 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:42:14 Download gff for
BS06731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7147811..7148689 | 36..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:16:03 Download gff for
BS06731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3035316..3036194 | 36..912 | 99 | | Plus |
BS06731.complete Sequence
1205 bp (1205 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635600
> BS06731.complete
GAAGTTATCAGTCGACATGAACCACTGGCTAAGTATCATTCTTCTTGGGG
TGTGGATATCCGCTCCTGAAGGTCTGGGTAACACGATCAAGGATCGCAAT
CTCTTCGCCACCGAACTCTTCCAAACCCTCGCCACAGATCGCCAGGATGA
GAACGTGATCATCTCGCCGGTTTCCATCCAGCTGGCCCTCGGGTTGGCTT
ACTACGGAGCTGAGGGCAGGACGGCCGCGGAACTGCAGAAGACCTTGCAC
GCCTCCGCCAAGGAGAGCAAAGATGGTCTGGCCGAGAGCTACCACAACCT
GCTGCACTCTTACATCAAGTCCAAGACCGTGTTGGAGATCGCCAACAAGG
TGTACACCCGGCAGAATCTCACGGTATCTAGCCACTTCCGAGAGGTGGCC
CAGAAGTACTTCGACTCCGAGGTAGAACCACTGGACTTCAGTCGCGAAAC
GGAGGCCGTGGAGCAGATCAACCGCTGGGTGAAGCAGCAGACGGAGAACA
AGATCGAACGGGTGGTGGAAAGCCTGGAGCCGGACACCAATGTGGCGCTG
GTCAACGCCATCTACTTCAAGGCTCGCTGGGCACGACCCTTCAACGACGA
GGATACCCGGGATCGCGAGTTCTGGCTGAGCGAGAGCCGGTCCATCCAGG
TGCCAACCATGTTCGCAGACAACTGGTACTACTACGCCGACTACCCGGAA
CTCGACGCCAAGGCCATTGAGCTGTTCTTCGAAAACATCAACCTGACCAT
GTGGTTCATCCTGCCCAACCAGCGTTCCGGACTACAGGCTCTGGAGCAGA
AGCTCAAGGGCGTCGACTTCAATCTGCTCGAAGACCGCTGGCAGTGGCAG
AGTGTGTCCGTTTACCTGCCCAAGTTCAAGTTCGAGTTCGACACGGACCT
AAGACCCACATTGCATAAGATGGGAATCAGTGCCATGTTCTCAGATGCAG
CCGACTTCAGCAACATTTTCCAGGACTCGCCCATCGGCACTCGGATCACA
AAGGTGCAGCACAAGACCTTCATCGATGTGAACGAGATCGGATGTGAGGC
GGCTGGAGCTAGTTATGCTGCCGGAGTTCCCATGTCCCTGCCCCTGGACC
CCAAGACTTTCGTGGCCGATCATCCATTTGCGTTCATCATTCGCGACAAG
CACGCTGTCTATTTCACCGGACACATTGTCAAGTTTTAAAAGCTTTCTAG
ACCAT
BS06731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn43Aa-RA | 1173 | CG12172-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn43Aa-RA | 1294 | CG12172-RA | 37..1209 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7147811..7148694 | 36..919 | 4420 | 100 | Plus |
2R | 25286936 | 2R | 7148873..7149019 | 918..1064 | 735 | 100 | Plus |
2R | 25286936 | 2R | 7149080..7149204 | 1065..1189 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:09:25 has no hits.
BS06731.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:45 Download gff for
BS06731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn43Aa-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:35 Download gff for
BS06731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn43Aa-RA | 23..1203 | 9..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:54 Download gff for
BS06731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn43Aa-RA | 37..1207 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:45 Download gff for
BS06731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn43Aa-RA | 23..1203 | 9..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:59 Download gff for
BS06731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn43Aa-RA | 37..1207 | 17..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:59 Download gff for
BS06731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7148875..7149019 | 920..1064 | 100 | -> | Plus |
2R | 7149080..7149202 | 1065..1187 | 100 | | Plus |
2R | 7147728..7147746 | 17..35 | 100 | -> | Plus |
2R | 7147811..7148694 | 36..919 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:54 Download gff for
BS06731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3035233..3035251 | 17..35 | 100 | -> | Plus |
arm_2R | 3035316..3036199 | 36..919 | 100 | -> | Plus |
arm_2R | 3036380..3036524 | 920..1064 | 100 | -> | Plus |
arm_2R | 3036585..3036707 | 1065..1187 | 100 | | Plus |
BS06731.pep Sequence
Translation from 16 to 1188
> BS06731.pep
MNHWLSIILLGVWISAPEGLGNTIKDRNLFATELFQTLATDRQDENVIIS
PVSIQLALGLAYYGAEGRTAAELQKTLHASAKESKDGLAESYHNLLHSYI
KSKTVLEIANKVYTRQNLTVSSHFREVAQKYFDSEVEPLDFSRETEAVEQ
INRWVKQQTENKIERVVESLEPDTNVALVNAIYFKARWARPFNDEDTRDR
EFWLSESRSIQVPTMFADNWYYYADYPELDAKAIELFFENINLTMWFILP
NQRSGLQALEQKLKGVDFNLLEDRWQWQSVSVYLPKFKFEFDTDLRPTLH
KMGISAMFSDAADFSNIFQDSPIGTRITKVQHKTFIDVNEIGCEAAGASY
AAGVPMSLPLDPKTFVADHPFAFIIRDKHAVYFTGHIVKF*
BS06731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn43Aa-PA | 390 | CG12172-PA | 1..390 | 1..390 | 2035 | 100 | Plus |
Spn42Dc-PB | 403 | CG9455-PB | 8..375 | 27..385 | 600 | 35.4 | Plus |
Spn42Dc-PA | 403 | CG9455-PA | 8..375 | 27..385 | 600 | 35.4 | Plus |
Spn42De-PB | 386 | CG9460-PB | 17..383 | 30..387 | 588 | 36 | Plus |
Spn42De-PA | 404 | CG9460-PA | 35..401 | 30..387 | 588 | 36 | Plus |