Clone Sequence Records
BS06733.3prime Sequence
543 bp (542 high quality bases) assembled on 2005-12-04
> BS06733.3prime
ATGGTCTAGAAAGCTTTTACACTGTGATTACAACGGGAACCTGGAAACAG
ATTAGGTTCTGATCGTTCGCATCCTTGGATTCCCACAACATGCTACCTTT
CATCACCGGCAAAGTTTCGTTCACAAAGATATTGGCCCAATAGGCCTTTC
CACCACTTGCGCTCTCTATGCATCCGTGATCTCCGTCGCAGGGATCGGGA
GTTATGGCCGCCTGGGTCTTGATGTAGTTAAACACCCATCGGACTTCGTG
CTTCAGAAAGCTGACGCCATTGCCATTATCATCGAAGCGCACAGTAACCT
TAATTGTCGCGTTCCGGGCCATGGAGCAGGGCAGTGTCGTACAGCTCTCG
ATGTCCAGGTAGCTGACCTGGTACAAAGAACCGCAATCCTCGAAGGGCAA
AGATCTTAGGGACAGATATTTTTTGTAAACAGCATCTCTGGTAGACTTGA
TCGTTCCGCCGGCCAATTCGTGGGCAGCGCAAATAACCAAGAGTATTTTT
AGATAGTAATCCATTAGGGCGCCGCGCATGTCGACTGATAACT
BS06733.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6164-PA | 513 | CG6164-RA | 1..513 | 529..17 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-RA | 712 | CG6164-RA | 158..672 | 530..16 | 2575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24140526..24140696 | 274..104 | 855 | 100 | Minus |
3R | 32079331 | 3R | 24138052..24138202 | 530..380 | 755 | 100 | Minus |
3R | 32079331 | 3R | 24139778..24139887 | 382..273 | 550 | 100 | Minus |
3R | 32079331 | 3R | 24140808..24140896 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:15:00 has no hits.
BS06733.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:25 Download gff for
BS06733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-PA | 1..513 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:38 Download gff for
BS06733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-PA | 1..513 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:52:54 Download gff for
BS06733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..672 | 16..530 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:20 Download gff for
BS06733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..672 | 16..530 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:20 Download gff for
BS06733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24138052..24138200 | 382..530 | 100 | -> | Minus |
3R | 24139779..24139886 | 274..381 | 100 | -> | Minus |
3R | 24140527..24140696 | 104..273 | 100 | -> | Minus |
3R | 24140809..24140896 | 16..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:52:54 Download gff for
BS06733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19965501..19965608 | 274..381 | 100 | -> | Minus |
arm_3R | 19963774..19963922 | 382..530 | 100 | -> | Minus |
arm_3R | 19966249..19966418 | 104..273 | 100 | -> | Minus |
arm_3R | 19966531..19966618 | 16..103 | 100 | | Minus |
BS06733.5prime Sequence
543 bp (542 high quality bases) assembled on 2005-12-04
> BS06733.5prime
GAAGTTATCAGTCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAA
TACTCTTGGTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAG
TCTACCAGAGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCC
CTTCGAGGATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGA
GCTGTACGACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTT
ACTGTGCGCTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGA
AGTCCGATGGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCG
ATCCCTGCGACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAG
GCCTATTGGGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGG
TAGCATGTTGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTT
TCCAGGTTCCCGTTGTAATCACAGTGTAAAAGCTTTCTAGACC
BS06733.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6164-PA | 513 | CG6164-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-RA | 712 | CG6164-RA | 158..672 | 16..530 | 2575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24140526..24140696 | 272..442 | 855 | 100 | Plus |
3R | 32079331 | 3R | 24138052..24138202 | 16..166 | 755 | 100 | Plus |
3R | 32079331 | 3R | 24139778..24139887 | 164..273 | 550 | 100 | Plus |
3R | 32079331 | 3R | 24140808..24140896 | 442..530 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:29:11 has no hits.
BS06733.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:26 Download gff for
BS06733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-PA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:40 Download gff for
BS06733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-PA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:11:44 Download gff for
BS06733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..672 | 16..530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:55 Download gff for
BS06733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..672 | 16..530 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:55 Download gff for
BS06733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24138052..24138200 | 16..164 | 100 | -> | Plus |
3R | 24139779..24139886 | 165..272 | 100 | -> | Plus |
3R | 24140527..24140696 | 273..442 | 100 | -> | Plus |
3R | 24140809..24140896 | 443..530 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:11:44 Download gff for
BS06733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19963774..19963922 | 16..164 | 100 | -> | Plus |
arm_3R | 19965501..19965608 | 165..272 | 100 | -> | Plus |
arm_3R | 19966249..19966418 | 273..442 | 100 | -> | Plus |
arm_3R | 19966531..19966618 | 443..530 | 100 | | Plus |
BS06733.complete Sequence
545 bp (545 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635601
> BS06733.complete
GAAGTTATCAGTCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAA
TACTCTTGGTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAG
TCTACCAGAGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCC
CTTCGAGGATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGA
GCTGTACGACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTT
ACTGTGCGCTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGA
AGTCCGATGGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCG
ATCCCTGCGACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAG
GCCTATTGGGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGG
TAGCATGTTGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTT
TCCAGGTTCCCGTTGTAATCACAGTGTAAAAGCTTTCTAGACCAT
BS06733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-RA | 513 | CG6164-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-RA | 712 | CG6164-RA | 158..672 | 16..530 | 2575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24140526..24140696 | 272..442 | 855 | 100 | Plus |
3R | 32079331 | 3R | 24138052..24138202 | 16..166 | 755 | 100 | Plus |
3R | 32079331 | 3R | 24139778..24139887 | 164..273 | 550 | 100 | Plus |
3R | 32079331 | 3R | 24140808..24140896 | 442..530 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:44:00 has no hits.
BS06733.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:15 Download gff for
BS06733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:34 Download gff for
BS06733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-RA | 158..672 | 16..530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:35 Download gff for
BS06733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 159..669 | 17..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:15 Download gff for
BS06733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-RA | 158..672 | 16..530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:26 Download gff for
BS06733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 159..669 | 17..527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:26 Download gff for
BS06733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24140809..24140893 | 443..527 | 100 | | Plus |
3R | 24138053..24138200 | 17..164 | 100 | -> | Plus |
3R | 24139779..24139886 | 165..272 | 100 | -> | Plus |
3R | 24140527..24140696 | 273..442 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:35 Download gff for
BS06733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19963775..19963922 | 17..164 | 100 | -> | Plus |
arm_3R | 19965501..19965608 | 165..272 | 100 | -> | Plus |
arm_3R | 19966249..19966418 | 273..442 | 100 | -> | Plus |
arm_3R | 19966531..19966615 | 443..527 | 100 | | Plus |
BS06733.pep Sequence
Translation from 16 to 528
> BS06733.pep
MRGALMDYYLKILLVICAAHELAGGTIKSTRDAVYKKYLSLRSLPFEDCG
SLYQVSYLDIESCTTLPCSMARNATIKVTVRFDDNGNGVSFLKHEVRWVF
NYIKTQAAITPDPCDGDHGCIESASGGKAYWANIFVNETLPVMKGSMLWE
SKDANDQNLICFQVPVVITV*
BS06733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-PA | 170 | CG6164-PA | 1..170 | 1..170 | 904 | 100 | Plus |