Clone BS06733 Report

Search the DGRC for BS06733

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2f-RA
Protein status:BS06733.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06733.3prime Sequence

543 bp (542 high quality bases) assembled on 2005-12-04

> BS06733.3prime
ATGGTCTAGAAAGCTTTTACACTGTGATTACAACGGGAACCTGGAAACAG
ATTAGGTTCTGATCGTTCGCATCCTTGGATTCCCACAACATGCTACCTTT
CATCACCGGCAAAGTTTCGTTCACAAAGATATTGGCCCAATAGGCCTTTC
CACCACTTGCGCTCTCTATGCATCCGTGATCTCCGTCGCAGGGATCGGGA
GTTATGGCCGCCTGGGTCTTGATGTAGTTAAACACCCATCGGACTTCGTG
CTTCAGAAAGCTGACGCCATTGCCATTATCATCGAAGCGCACAGTAACCT
TAATTGTCGCGTTCCGGGCCATGGAGCAGGGCAGTGTCGTACAGCTCTCG
ATGTCCAGGTAGCTGACCTGGTACAAAGAACCGCAATCCTCGAAGGGCAA
AGATCTTAGGGACAGATATTTTTTGTAAACAGCATCTCTGGTAGACTTGA
TCGTTCCGCCGGCCAATTCGTGGGCAGCGCAAATAACCAAGAGTATTTTT
AGATAGTAATCCATTAGGGCGCCGCGCATGTCGACTGATAACT

BS06733.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6164-PA 513 CG6164-RA 1..513 529..17 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-RA 712 CG6164-RA 158..672 530..16 2575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24140526..24140696 274..104 855 100 Minus
3R 32079331 3R 24138052..24138202 530..380 755 100 Minus
3R 32079331 3R 24139778..24139887 382..273 550 100 Minus
3R 32079331 3R 24140808..24140896 104..16 445 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:15:00 has no hits.

BS06733.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:25 Download gff for BS06733.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6164-PA 1..513 17..529 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:38 Download gff for BS06733.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6164-PA 1..513 17..529 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:52:54 Download gff for BS06733.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 158..672 16..530 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:20 Download gff for BS06733.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 158..672 16..530 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:20 Download gff for BS06733.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24138052..24138200 382..530 100 -> Minus
3R 24139779..24139886 274..381 100 -> Minus
3R 24140527..24140696 104..273 100 -> Minus
3R 24140809..24140896 16..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:52:54 Download gff for BS06733.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19965501..19965608 274..381 100 -> Minus
arm_3R 19963774..19963922 382..530 100 -> Minus
arm_3R 19966249..19966418 104..273 100 -> Minus
arm_3R 19966531..19966618 16..103 100   Minus

BS06733.5prime Sequence

543 bp (542 high quality bases) assembled on 2005-12-04

> BS06733.5prime
GAAGTTATCAGTCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAA
TACTCTTGGTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAG
TCTACCAGAGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCC
CTTCGAGGATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGA
GCTGTACGACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTT
ACTGTGCGCTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGA
AGTCCGATGGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCG
ATCCCTGCGACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAG
GCCTATTGGGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGG
TAGCATGTTGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTT
TCCAGGTTCCCGTTGTAATCACAGTGTAAAAGCTTTCTAGACC

BS06733.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6164-PA 513 CG6164-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-RA 712 CG6164-RA 158..672 16..530 2575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24140526..24140696 272..442 855 100 Plus
3R 32079331 3R 24138052..24138202 16..166 755 100 Plus
3R 32079331 3R 24139778..24139887 164..273 550 100 Plus
3R 32079331 3R 24140808..24140896 442..530 445 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:29:11 has no hits.

BS06733.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:26 Download gff for BS06733.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6164-PA 1..513 17..529 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:40 Download gff for BS06733.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6164-PA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:11:44 Download gff for BS06733.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 158..672 16..530 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:55 Download gff for BS06733.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 158..672 16..530 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:55 Download gff for BS06733.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24138052..24138200 16..164 100 -> Plus
3R 24139779..24139886 165..272 100 -> Plus
3R 24140527..24140696 273..442 100 -> Plus
3R 24140809..24140896 443..530 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:11:44 Download gff for BS06733.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19963774..19963922 16..164 100 -> Plus
arm_3R 19965501..19965608 165..272 100 -> Plus
arm_3R 19966249..19966418 273..442 100 -> Plus
arm_3R 19966531..19966618 443..530 100   Plus

BS06733.complete Sequence

545 bp (545 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635601

> BS06733.complete
GAAGTTATCAGTCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAA
TACTCTTGGTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAG
TCTACCAGAGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCC
CTTCGAGGATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGA
GCTGTACGACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTT
ACTGTGCGCTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGA
AGTCCGATGGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCG
ATCCCTGCGACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAG
GCCTATTGGGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGG
TAGCATGTTGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTT
TCCAGGTTCCCGTTGTAATCACAGTGTAAAAGCTTTCTAGACCAT

BS06733.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-RA 513 CG6164-PA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-RA 712 CG6164-RA 158..672 16..530 2575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24140526..24140696 272..442 855 100 Plus
3R 32079331 3R 24138052..24138202 16..166 755 100 Plus
3R 32079331 3R 24139778..24139887 164..273 550 100 Plus
3R 32079331 3R 24140808..24140896 442..530 445 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:44:00 has no hits.

BS06733.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:15 Download gff for BS06733.complete
Subject Subject Range Query Range Percent Splice Strand
CG6164-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:34 Download gff for BS06733.complete
Subject Subject Range Query Range Percent Splice Strand
CG6164-RA 158..672 16..530 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:35 Download gff for BS06733.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 159..669 17..527 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:15 Download gff for BS06733.complete
Subject Subject Range Query Range Percent Splice Strand
CG6164-RA 158..672 16..530 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:26 Download gff for BS06733.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 159..669 17..527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:26 Download gff for BS06733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24140809..24140893 443..527 100   Plus
3R 24138053..24138200 17..164 100 -> Plus
3R 24139779..24139886 165..272 100 -> Plus
3R 24140527..24140696 273..442 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:35 Download gff for BS06733.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19963775..19963922 17..164 100 -> Plus
arm_3R 19965501..19965608 165..272 100 -> Plus
arm_3R 19966249..19966418 273..442 100 -> Plus
arm_3R 19966531..19966615 443..527 100   Plus

BS06733.pep Sequence

Translation from 16 to 528

> BS06733.pep
MRGALMDYYLKILLVICAAHELAGGTIKSTRDAVYKKYLSLRSLPFEDCG
SLYQVSYLDIESCTTLPCSMARNATIKVTVRFDDNGNGVSFLKHEVRWVF
NYIKTQAAITPDPCDGDHGCIESASGGKAYWANIFVNETLPVMKGSMLWE
SKDANDQNLICFQVPVVITV*

BS06733.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-PA 170 CG6164-PA 1..170 1..170 904 100 Plus