Clone Sequence Records
BS06735.3prime Sequence
866 bp (770 high quality bases) assembled on 2005-12-04
> BS06735.3prime
ATGGTCTAGAAAGCTTCTAGAAATTTGGAGCTACGATGTTAAAGAATTTG
TTAGCCAGCTCAATGCCGAAGAAGCAGGCAGCGTTGGCTGGGAAGGCTCG
GAGCATGATGGGCGTTACGCCGCGGTACAAGGCCAGAGGTCCATCCTTGA
CAATCAGATCCTTGAAGACACTGCGTATGCCGTGCTTGTAGGTGCCTTCG
GGAGCCGATTGTAGGCGGCTCTTTAACACGTCGGCTGGCATGCCCAGAAT
CCAGTAGGCCATGCCCGCCACTCCACCTGCGAAAATCGTTGAGGCAGTAC
TGATTTGTCCCGTCTCTGACTTCGACTTGGCCACATCCTGCAGCGCCTCG
TAGACCAGGAAATACAGCCCGTTGGCGGGCAAATCCCTGAGCATTGTGGC
GCAGCTGCCCTTGAAAACGCTGCGAAGTCCACCCTCCTTGTATAGCTTGC
CGGCGCAGTCGATCATGCCGTTGTACTTGCGCTCGCCACCCTGACCCTGC
TGCGTCTGCAGGAGCACCTTGATGCGCTCGCCGGGTGCCATTATCAGGGT
GGAGAACAGGCCGGAGAAGGAGCCGGCCACGAAGATTTGCGGGTAGGTCA
GCTTGGCGTCCTCGCCGCGCTGCTGCAGCCGCTTGCCCAGCGCATAGCCG
GCGAAGCACATCGCAAAGATCGGAGCAACGCCCGTCAACGGTGCGGACAT
GCCCTTGTACAGACCGCGGACGCCCTCATTTTTGATCGTCTTGGCCGCAC
AGTCGAAGGTGCCGCGGTACAGAGGCTGCTCACCCGGCGCCGGACGCGGC
ATGGTCTGCAGGCGCACCTTGATGGTGTCCAGCGGATGGCCAGAGAGCAC
ATTGCAGATCCCACCG
BS06735.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3057-PA | 921 | colt-RA | 72..921 | 866..17 | 4150 | 99.5 | Minus |
CG3057-PB | 921 | colt-RB | 72..921 | 866..17 | 4150 | 99.5 | Minus |
CG3057-PC | 921 | colt-RC | 72..921 | 866..17 | 4150 | 99.5 | Minus |
CG3057-PD | 921 | colt-RD | 72..921 | 866..17 | 4150 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-RD | 1449 | CG3057-RD | 573..1422 | 866..17 | 4190 | 99.5 | Minus |
colt-RA | 1480 | CG3057-RA | 576..1425 | 866..17 | 4190 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768645..2769494 | 17..866 | 4190 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:38:26 has no hits.
BS06735.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:29 Download gff for
BS06735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-PD | 72..921 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:45 Download gff for
BS06735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3057-PD | 72..921 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:14:21 Download gff for
BS06735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 576..1428 | 10..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:32 Download gff for
BS06735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 576..1428 | 10..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:32 Download gff for
BS06735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2768642..2769494 | 10..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:14:21 Download gff for
BS06735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2768642..2769494 | 10..866 | 99 | | Plus |
BS06735.5prime Sequence
943 bp (831 high quality bases) assembled on 2005-12-04
> BS06735.5prime
GAAGTTATCAGTCGACATGACCACCACGGAGAACGTGTCCACGGAGCGCA
AAGCGAATCCAGTGAAGTCCTTCCTGACCGGCGGATTCGGTGGGATCTGC
AATGTGCTCTCTGGCCATCCGCTGGACACCATCAAGGTGCGCCTGCAGAC
CATGCCGCGTCCGGCGCCGGGTGAGCAGCCTCTGTACCGCGGCACCTTCG
ACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAG
GGCATGTCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTT
CGCCGGCTATGCGCTGGGCAAGCGGCTGCAGCAGCGCGGCGAGGACGCCA
AGCTGACCTACCCGCAAATCTTCGTGGCCGGCTCCTTCTCCGGCCTGTTC
TCCACCCTGATAATGGCACCCGGCGAGCGCATCAAGGTGCTCCTGCAGAC
GCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGACTGCG
CCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGC
TGCGCCACAATGCTCAGGGATTTGCCCGCCAACGGGCTGTATTTCCTGGT
CTACGAGGCGCTGCAGGATGTGGCCAAGTCGAAGTCAGAGACGGGACAAA
TCAGTACTGCCTCAACGATTTTCGCAGGTGGAGTGGCGGGCATGGCCTAC
TGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGCCGCCTACAATCGGC
TCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGATCTGA
TTGTCAAGGATGGACCTCTGGCCTTGTACCGCGGCGTAACGCCCATCATG
CTCCGAGCCTTCCCAGCCAACGCTGCCTGCTTCTTCNGCATTGAGCTGGC
TAACAAATTCTTTAACATCGTAACTCCAAATTTCTAGAAGCTT
BS06735.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3057-PA | 921 | colt-RA | 1..921 | 17..937 | 4461 | 99.3 | Plus |
CG3057-PB | 921 | colt-RB | 1..921 | 17..937 | 4461 | 99.3 | Plus |
CG3057-PC | 921 | colt-RC | 1..921 | 17..937 | 4461 | 99.3 | Plus |
CG3057-PD | 921 | colt-RD | 1..921 | 17..937 | 4461 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-RD | 1449 | CG3057-RD | 501..1422 | 16..937 | 4524 | 99.3 | Plus |
colt-RA | 1480 | CG3057-RA | 504..1425 | 16..937 | 4524 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768645..2769566 | 937..16 | 4524 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:23:29 has no hits.
BS06735.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:30 Download gff for
BS06735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-PD | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:46 Download gff for
BS06735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3057-PD | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:39 Download gff for
BS06735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 499..1427 | 11..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:45 Download gff for
BS06735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 499..1427 | 11..943 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:45 Download gff for
BS06735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2768642..2769571 | 11..943 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:39 Download gff for
BS06735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2768642..2769571 | 11..943 | 98 | | Minus |
BS06735.complete Sequence
953 bp (953 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635602
> BS06735.complete
GAAGTTATCAGTCGACATGACCACCACGGAGAACGTGTCCACGGAGCGCA
AAGCGAATCCAGTGAAGTCCTTCCTGACCGGCGGATTCGGTGGGATCTGC
AATGTGCTCTCTGGCCATCCGCTGGACACCATCAAGGTGCGCCTGCAGAC
CATGCCGCGTCCGGCGCCGGGTGAGCAGCCTCTGTACCGCGGCACCTTCG
ACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAG
GGCATGTCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTT
CGCCGGCTATGCGCTGGGCAAGCGGCTGCAGCAGCGCGGCGAGGACGCCA
AGCTGACCTACCCGCAAATCTTCGTGGCCGGCTCCTTCTCCGGCCTGTTC
TCCACCCTGATAATGGCACCCGGCGAGCGCATCAAGGTGCTCCTGCAGAC
GCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGACTGCG
CCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGC
TGCGCCACAATGCTCAGGGATTTGCCCGCCAACGGGCTGTATTTCCTGGT
CTACGAGGCGCTGCAGGATGTGGCCAAGTCGAAGTCAGAGACGGGACAAA
TCAGTACTGCCTCAACGATTTTCGCAGGTGGAGTGGCGGGCATGGCCTAC
TGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGCCGCCTACAATCGGC
TCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGATCTGA
TTGTCAAGGATGGACCTCTGGCCTTGTACCGCGGCGTAACGCCCATCATG
CTCCGAGCCTTCCCAGCCAACGCTGCCTGCTTCTTCGGCATTGAGCTGGC
TAACAAATTCTTTAACATCGTAGCTCCAAATTTCTAGAAGCTTTCTAGAC
CAT
BS06735.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-RD | 921 | CG3057-PD | 1..921 | 17..937 | 4545 | 99.6 | Plus |
colt-RA | 921 | CG3057-PA | 1..921 | 17..937 | 4545 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-RD | 1449 | CG3057-RD | 501..1422 | 16..937 | 4550 | 99.6 | Plus |
colt-RA | 1480 | CG3057-RA | 504..1425 | 16..937 | 4550 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768645..2769566 | 937..16 | 4550 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:15:04 has no hits.
BS06735.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:46 Download gff for
BS06735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RC | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:02 Download gff for
BS06735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RC | 496..1425 | 11..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:52 Download gff for
BS06735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 505..1425 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:46 Download gff for
BS06735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RC | 496..1425 | 11..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:54 Download gff for
BS06735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 505..1425 | 17..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:54 Download gff for
BS06735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2768645..2769565 | 17..937 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:52 Download gff for
BS06735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2768645..2769565 | 17..937 | 99 | | Minus |
BS06735.pep Sequence
Translation from 16 to 936
> BS06735.pep
MTTTENVSTERKANPVKSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPA
PGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYAL
GKRLQQRGEDAKLTYPQIFVAGSFSGLFSTLIMAPGERIKVLLQTQQGQG
GERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQ
DVAKSKSETGQISTASTIFAGGVAGMAYWILGMPADVLKSRLQSAPEGTY
KHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANAACFFGIELANKFFN
IVAPNF*
BS06735.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-PD | 306 | CG3057-PD | 1..306 | 1..306 | 1587 | 100 | Plus |
colt-PA | 306 | CG3057-PA | 1..306 | 1..306 | 1587 | 100 | Plus |
CG3476-PA | 299 | CG3476-PA | 6..294 | 7..296 | 978 | 62.8 | Plus |
CG4995-PD | 360 | CG4995-PD | 2..264 | 16..290 | 397 | 36.4 | Plus |
CG4995-PC | 360 | CG4995-PC | 2..264 | 16..290 | 397 | 36.4 | Plus |
CG4995-PD | 360 | CG4995-PD | 97..276 | 19..206 | 205 | 29.3 | Plus |
CG3476-PA | 299 | CG3476-PA | 118..299 | 19..205 | 162 | 27.7 | Plus |