Clone BS06735 Report

Search the DGRC for BS06735

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptcolt-RA
Protein status:BS06735.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06735.3prime Sequence

866 bp (770 high quality bases) assembled on 2005-12-04

> BS06735.3prime
ATGGTCTAGAAAGCTTCTAGAAATTTGGAGCTACGATGTTAAAGAATTTG
TTAGCCAGCTCAATGCCGAAGAAGCAGGCAGCGTTGGCTGGGAAGGCTCG
GAGCATGATGGGCGTTACGCCGCGGTACAAGGCCAGAGGTCCATCCTTGA
CAATCAGATCCTTGAAGACACTGCGTATGCCGTGCTTGTAGGTGCCTTCG
GGAGCCGATTGTAGGCGGCTCTTTAACACGTCGGCTGGCATGCCCAGAAT
CCAGTAGGCCATGCCCGCCACTCCACCTGCGAAAATCGTTGAGGCAGTAC
TGATTTGTCCCGTCTCTGACTTCGACTTGGCCACATCCTGCAGCGCCTCG
TAGACCAGGAAATACAGCCCGTTGGCGGGCAAATCCCTGAGCATTGTGGC
GCAGCTGCCCTTGAAAACGCTGCGAAGTCCACCCTCCTTGTATAGCTTGC
CGGCGCAGTCGATCATGCCGTTGTACTTGCGCTCGCCACCCTGACCCTGC
TGCGTCTGCAGGAGCACCTTGATGCGCTCGCCGGGTGCCATTATCAGGGT
GGAGAACAGGCCGGAGAAGGAGCCGGCCACGAAGATTTGCGGGTAGGTCA
GCTTGGCGTCCTCGCCGCGCTGCTGCAGCCGCTTGCCCAGCGCATAGCCG
GCGAAGCACATCGCAAAGATCGGAGCAACGCCCGTCAACGGTGCGGACAT
GCCCTTGTACAGACCGCGGACGCCCTCATTTTTGATCGTCTTGGCCGCAC
AGTCGAAGGTGCCGCGGTACAGAGGCTGCTCACCCGGCGCCGGACGCGGC
ATGGTCTGCAGGCGCACCTTGATGGTGTCCAGCGGATGGCCAGAGAGCAC
ATTGCAGATCCCACCG

BS06735.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3057-PA 921 colt-RA 72..921 866..17 4150 99.5 Minus
CG3057-PB 921 colt-RB 72..921 866..17 4150 99.5 Minus
CG3057-PC 921 colt-RC 72..921 866..17 4150 99.5 Minus
CG3057-PD 921 colt-RD 72..921 866..17 4150 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
colt-RD 1449 CG3057-RD 573..1422 866..17 4190 99.5 Minus
colt-RA 1480 CG3057-RA 576..1425 866..17 4190 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768645..2769494 17..866 4190 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 21:38:26 has no hits.

BS06735.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:29 Download gff for BS06735.3prime
Subject Subject Range Query Range Percent Splice Strand
colt-PD 72..921 17..866 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:45 Download gff for BS06735.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3057-PD 72..921 17..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:14:21 Download gff for BS06735.3prime
Subject Subject Range Query Range Percent Splice Strand
colt-RA 576..1428 10..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:32 Download gff for BS06735.3prime
Subject Subject Range Query Range Percent Splice Strand
colt-RA 576..1428 10..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:32 Download gff for BS06735.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2768642..2769494 10..866 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:14:21 Download gff for BS06735.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2768642..2769494 10..866 99   Plus

BS06735.5prime Sequence

943 bp (831 high quality bases) assembled on 2005-12-04

> BS06735.5prime
GAAGTTATCAGTCGACATGACCACCACGGAGAACGTGTCCACGGAGCGCA
AAGCGAATCCAGTGAAGTCCTTCCTGACCGGCGGATTCGGTGGGATCTGC
AATGTGCTCTCTGGCCATCCGCTGGACACCATCAAGGTGCGCCTGCAGAC
CATGCCGCGTCCGGCGCCGGGTGAGCAGCCTCTGTACCGCGGCACCTTCG
ACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAG
GGCATGTCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTT
CGCCGGCTATGCGCTGGGCAAGCGGCTGCAGCAGCGCGGCGAGGACGCCA
AGCTGACCTACCCGCAAATCTTCGTGGCCGGCTCCTTCTCCGGCCTGTTC
TCCACCCTGATAATGGCACCCGGCGAGCGCATCAAGGTGCTCCTGCAGAC
GCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGACTGCG
CCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGC
TGCGCCACAATGCTCAGGGATTTGCCCGCCAACGGGCTGTATTTCCTGGT
CTACGAGGCGCTGCAGGATGTGGCCAAGTCGAAGTCAGAGACGGGACAAA
TCAGTACTGCCTCAACGATTTTCGCAGGTGGAGTGGCGGGCATGGCCTAC
TGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGCCGCCTACAATCGGC
TCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGATCTGA
TTGTCAAGGATGGACCTCTGGCCTTGTACCGCGGCGTAACGCCCATCATG
CTCCGAGCCTTCCCAGCCAACGCTGCCTGCTTCTTCNGCATTGAGCTGGC
TAACAAATTCTTTAACATCGTAACTCCAAATTTCTAGAAGCTT

BS06735.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3057-PA 921 colt-RA 1..921 17..937 4461 99.3 Plus
CG3057-PB 921 colt-RB 1..921 17..937 4461 99.3 Plus
CG3057-PC 921 colt-RC 1..921 17..937 4461 99.3 Plus
CG3057-PD 921 colt-RD 1..921 17..937 4461 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
colt-RD 1449 CG3057-RD 501..1422 16..937 4524 99.3 Plus
colt-RA 1480 CG3057-RA 504..1425 16..937 4524 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768645..2769566 937..16 4524 99.3 Minus
Blast to na_te.dros performed on 2015-02-11 10:23:29 has no hits.

BS06735.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:30 Download gff for BS06735.5prime
Subject Subject Range Query Range Percent Splice Strand
colt-PD 1..921 17..937 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:46 Download gff for BS06735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3057-PD 1..921 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:39 Download gff for BS06735.5prime
Subject Subject Range Query Range Percent Splice Strand
colt-RA 499..1427 11..943 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:45 Download gff for BS06735.5prime
Subject Subject Range Query Range Percent Splice Strand
colt-RA 499..1427 11..943 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:45 Download gff for BS06735.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2768642..2769571 11..943 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:39 Download gff for BS06735.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2768642..2769571 11..943 98   Minus

BS06735.complete Sequence

953 bp (953 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635602

> BS06735.complete
GAAGTTATCAGTCGACATGACCACCACGGAGAACGTGTCCACGGAGCGCA
AAGCGAATCCAGTGAAGTCCTTCCTGACCGGCGGATTCGGTGGGATCTGC
AATGTGCTCTCTGGCCATCCGCTGGACACCATCAAGGTGCGCCTGCAGAC
CATGCCGCGTCCGGCGCCGGGTGAGCAGCCTCTGTACCGCGGCACCTTCG
ACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAG
GGCATGTCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTT
CGCCGGCTATGCGCTGGGCAAGCGGCTGCAGCAGCGCGGCGAGGACGCCA
AGCTGACCTACCCGCAAATCTTCGTGGCCGGCTCCTTCTCCGGCCTGTTC
TCCACCCTGATAATGGCACCCGGCGAGCGCATCAAGGTGCTCCTGCAGAC
GCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGACTGCG
CCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGC
TGCGCCACAATGCTCAGGGATTTGCCCGCCAACGGGCTGTATTTCCTGGT
CTACGAGGCGCTGCAGGATGTGGCCAAGTCGAAGTCAGAGACGGGACAAA
TCAGTACTGCCTCAACGATTTTCGCAGGTGGAGTGGCGGGCATGGCCTAC
TGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGCCGCCTACAATCGGC
TCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGATCTGA
TTGTCAAGGATGGACCTCTGGCCTTGTACCGCGGCGTAACGCCCATCATG
CTCCGAGCCTTCCCAGCCAACGCTGCCTGCTTCTTCGGCATTGAGCTGGC
TAACAAATTCTTTAACATCGTAGCTCCAAATTTCTAGAAGCTTTCTAGAC
CAT

BS06735.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
colt-RD 921 CG3057-PD 1..921 17..937 4545 99.6 Plus
colt-RA 921 CG3057-PA 1..921 17..937 4545 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
colt-RD 1449 CG3057-RD 501..1422 16..937 4550 99.6 Plus
colt-RA 1480 CG3057-RA 504..1425 16..937 4550 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768645..2769566 937..16 4550 99.6 Minus
Blast to na_te.dros performed on 2014-11-28 01:15:04 has no hits.

BS06735.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:46 Download gff for BS06735.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RC 1..921 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:02 Download gff for BS06735.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RC 496..1425 11..944 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:52 Download gff for BS06735.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RA 505..1425 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:46 Download gff for BS06735.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RC 496..1425 11..944 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:54 Download gff for BS06735.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RA 505..1425 17..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:54 Download gff for BS06735.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2768645..2769565 17..937 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:52 Download gff for BS06735.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2768645..2769565 17..937 99   Minus

BS06735.pep Sequence

Translation from 16 to 936

> BS06735.pep
MTTTENVSTERKANPVKSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPA
PGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYAL
GKRLQQRGEDAKLTYPQIFVAGSFSGLFSTLIMAPGERIKVLLQTQQGQG
GERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQ
DVAKSKSETGQISTASTIFAGGVAGMAYWILGMPADVLKSRLQSAPEGTY
KHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANAACFFGIELANKFFN
IVAPNF*

BS06735.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
colt-PD 306 CG3057-PD 1..306 1..306 1587 100 Plus
colt-PA 306 CG3057-PA 1..306 1..306 1587 100 Plus
CG3476-PA 299 CG3476-PA 6..294 7..296 978 62.8 Plus
CG4995-PD 360 CG4995-PD 2..264 16..290 397 36.4 Plus
CG4995-PC 360 CG4995-PC 2..264 16..290 397 36.4 Plus
CG4995-PD 360 CG4995-PD 97..276 19..206 205 29.3 Plus
CG3476-PA 299 CG3476-PA 118..299 19..205 162 27.7 Plus