Clone Sequence Records
BS06736.3prime Sequence
767 bp (746 high quality bases) assembled on 2005-12-04
> BS06736.3prime
ATGGTCTAGAAAGCTTCTACTTCATTCGCTTCACTTTACCAGGAGCGCTT
GGTATCTTTTTCAGTACGTTGGGAATCCATTTCAGTAAATCGTCGTGTGT
TAGCTGAAAATCACTGTCTGCCCACAAAAGTTTCAGTTCATCCATCACCA
AACCAAGCCTCATTCCGTTCAGACCACGCTGAGCCAAAGCATTTCCCCTG
ATCGGGAAGTCCGGCTTGACCCACGACTTGAGCTGGTTGTAAAGTTCCAG
TTTGCCAGAGTATTTCAGCAACTGTTCTACGAAATCCCTTTGAATGTACT
TTTGTAAGCACAACTTCTGATAGTCACGCAGGGTCGTGTACTGTGAGCCA
ACCTTCTCCCGCTCCTGGGTAATGAACCTAGCCAGGTCTCGTTCGTAGGC
GGATAGCTTCAGGCGTTTGTGCATTTCCATGGCGTCTTCCACGGAGTGCA
GCATCCCTGCCAAGTACAAAATCGGCTGATGTGGCTTTTCAAATTGATCT
AGCGCTTTGCAAAGCCGGTCGAACTCATCCAGATATGGCTCTTTAGGCAG
CCCAATGTACTCGAATAGGTTACAACGGTGCATCTCCAGAAACAATGCGG
CTCCGAAATTTCCCGGCACTATCTTTTGGAGCTCAGACCAGATCCGCTCG
CCACTTATTCTCGCAAGACCTTTCGCGTTTTCCTTTATGGCTGCCAGGGT
GGCCTTATCGTGGTTGTTTTCCTCACTTGCGATGCGTCCGTAGAATCGGA
AATAGCGCAGGATGCGC
BS06736.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-PA | 1434 | CG2100-RA | 684..1434 | 767..17 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-RB | 1597 | CG2100-RB | 783..1533 | 767..17 | 3755 | 100 | Minus |
| CG2100-RA | 1586 | CG2100-RA | 783..1533 | 767..17 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5735157..5735573 | 351..767 | 2085 | 100 | Plus |
| 3R | 32079331 | 3R | 5734762..5735099 | 17..354 | 1690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:58:08 has no hits.
BS06736.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:31 Download gff for
BS06736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-PA | 684..1434 | 17..767 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:48 Download gff for
BS06736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-PA | 684..1434 | 17..767 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:58:21 Download gff for
BS06736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 783..1537 | 11..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:54 Download gff for
BS06736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 783..1537 | 11..767 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:54 Download gff for
BS06736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5734758..5735097 | 11..352 | 99 | <- | Plus |
| 3R | 5735159..5735573 | 353..767 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:58:21 Download gff for
BS06736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1560480..1560819 | 11..352 | 99 | <- | Plus |
| arm_3R | 1560881..1561295 | 353..767 | 100 | | Plus |
BS06736.5prime Sequence
760 bp (758 high quality bases) assembled on 2005-12-04
> BS06736.5prime
GAAGTTATCAGTCGACATGAATGGACCAAGCCTCCTCGTAAAGTTGACCA
CACGTGCCTTCCTGTTATTCAACGGTCGCCCCCAGAATCGCTGGCTAAAG
TCGATGGCCAATAGTATGGTTTGCTCGCGAGGCGTCTCTCCAGAATTGAT
TGCCCAGCTGGGAAAACCACCTAGGATGCGCACAAACCCGGCATTCCGGA
AGGTGGCAACTCCTGAGTTCAAAAGCATATTTACCCCCGAGCTGAATGAC
CTTGTGGCGCTCTTTAAGAAGTACGACTACGAGCTGCGGATCGCCGGCGG
AGCTGTGCGCGACATTCTGATGGGCATTCCACCGAAGGACATCGACTTGG
CCACCACCGCCACTCCGGATCAGATGAAGCAGATGTTTGAGAAGGAGGAG
GTGCGAATGATAAACGCAAACGGCGAAAAGCACGGCACCATCACTCCTAG
AATCAATGACAAGGAGAACTTCGAGGTGACCACATTACGCATCGACATCC
GCACCGATGGACGCCATGCGGAGGTGATGTACACGACTGACTGGCAACTG
GATGCGAACCGCCGCGATTTGACAATCAACTCTATGTTCTTAGGCTTTGA
TGGCACCGTGTACGATTACTTCTATGGCTACGATGATCTCCAGGAGCGTC
GCGTGGTCTTCGTGGGCGAAGCAGATATTCGCATTAAGGAGGATTTTCTG
CGCATCCTGCGCTATTTCCGATTCTACGGACGCATCGCAAGTGAGGAAAA
CAACCACGAT
BS06736.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-PA | 1434 | CG2100-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-RB | 1597 | CG2100-RB | 98..843 | 15..760 | 3730 | 100 | Plus |
| CG2100-RA | 1586 | CG2100-RA | 98..843 | 15..760 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5735513..5736258 | 760..15 | 3730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:57:47 has no hits.
BS06736.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:32 Download gff for
BS06736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:49 Download gff for
BS06736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:15 Download gff for
BS06736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 92..843 | 6..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:44 Download gff for
BS06736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 92..843 | 6..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:44 Download gff for
BS06736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5735513..5736264 | 6..760 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:15 Download gff for
BS06736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1561235..1561986 | 6..760 | 99 | | Minus |
BS06736.complete Sequence
1466 bp (1466 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635603
> BS06736.complete
GAAGTTATCAGTCGACATGAATGGACCAAGCCTCCTCGTAAAGTTGACCA
CACGTGCCTTCCTGTTATTCAACGGTCGCCCCCAGAATCGCTGGCTAAAG
TCGATGGCCAATAGTATGGTTTGCTCGCGAGGCGTCTCTCCAGAATTGAT
TGCCCAGCTGGGAAAACCACCTAGGATGCGCACAAACCCGGCATTCCGGA
AGGTGGCAACTCCTGAGTTCAAAAGCATATTTACCCCCGAGCTGAATGAC
CTTGTGGCGCTCTTTAAGAAGTACGACTACGAGCTGCGGATCGCCGGCGG
AGCTGTGCGCGACATTCTGATGGGCATTCCACCGAAGGACATCGACTTGG
CCACCACCGCCACTCCGGATCAGATGAAGCAGATGTTTGAGAAGGAGGAG
GTGCGAATGATAAACGCAAACGGCGAAAAGCACGGCACCATCACTCCTAG
AATCAATGACAAGGAGAACTTCGAGGTGACCACATTACGCATCGACATCC
GCACCGATGGACGCCATGCGGAGGTGATGTACACGACTGACTGGCAACTG
GATGCGAACCGCCGCGATTTGACAATCAACTCTATGTTCTTAGGCTTTGA
TGGCACCGTGTACGATTACTTCTATGGCTACGATGATCTCCAGGAGCGTC
GCGTGGTCTTCGTGGGCGAAGCAGATATTCGCATTAAGGAGGATTTTCTG
CGCATCCTGCGCTATTTCCGATTCTACGGACGCATCGCAAGTGAGGAAAA
CAACCACGATAAGGCCACCCTGGCAGCCATAAAGGAAAACGCGAAAGGTC
TTGCGAGAATAAGTGGCGAGCGGATCTGGTCTGAGCTCCAAAAGATAGTG
CCGGGAAATTTCGGAGCCGCATTGTTTCTGGAGATGCACCGTTGTAACCT
ATTCGAGTACATTGGGCTGCCTAAAGAGCCATATCTGGATGAGTTCGACC
GGCTTTGCAAAGCGCTAGATCAATTTGAAAAGCCACATCAGCCGATTTTG
TACTTGGCAGGGATGCTGCACTCCGTGGAAGACGCCATGGAAATGCACAA
ACGCCTGAAGCTATCCGCCTACGAACGAGACCTGGCTAGGTTCATTACCC
AGGAGCGGGAGAAGGTTGGCTCACAGTACACGACCCTGCGTGACTATCAG
AAGTTGTGCTTACAAAAGTACATTCAAAGGGATTTCGTAGAACAGTTGCT
GAAATACTCTGGCAAACTGGAACTTTACAACCAGCTCAAGTCGTGGGTCA
AGCCGGACTTCCCGATCAGGGGAAATGCTTTGGCTCAGCGTGGTCTGAAC
GGAATGAGGCTTGGTTTGGTGATGGATGAACTGAAACTTTTGTGGGCAGA
CAGTGATTTTCAGCTAACACACGACGATTTACTGAAATGGATTCCCAACG
TACTGAAAAAGATACCAAGCGCTCCTGGTAAAGTGAAGCGAATGAAGTAG
AAGCTTTCTAGACCAT
BS06736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-RB | 1434 | CG2100-PB | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| CG2100-RA | 1434 | CG2100-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-RB | 1597 | CG2100-RB | 98..1533 | 15..1450 | 7180 | 100 | Plus |
| CG2100-RA | 1586 | CG2100-RA | 98..1533 | 15..1450 | 7180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5735157..5736258 | 1116..15 | 5510 | 100 | Minus |
| 3R | 32079331 | 3R | 5734762..5735099 | 1450..1113 | 1690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:45 has no hits.
BS06736.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:47 Download gff for
BS06736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 1..1434 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:37 Download gff for
BS06736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 133..1578 | 6..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:24 Download gff for
BS06736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 100..1533 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:48 Download gff for
BS06736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 133..1578 | 6..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:36 Download gff for
BS06736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 100..1533 | 17..1450 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:36 Download gff for
BS06736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5734762..5735097 | 1115..1450 | 100 | <- | Minus |
| 3R | 5735159..5736256 | 17..1114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:24 Download gff for
BS06736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1560484..1560819 | 1115..1450 | 100 | <- | Minus |
| arm_3R | 1560881..1561978 | 17..1114 | 100 | | Minus |
BS06736.pep Sequence
Translation from 16 to 1449
> BS06736.pep
MNGPSLLVKLTTRAFLLFNGRPQNRWLKSMANSMVCSRGVSPELIAQLGK
PPRMRTNPAFRKVATPEFKSIFTPELNDLVALFKKYDYELRIAGGAVRDI
LMGIPPKDIDLATTATPDQMKQMFEKEEVRMINANGEKHGTITPRINDKE
NFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSMFLGFDGTVYD
YFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIASEENNHDKA
TLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIG
LPKEPYLDEFDRLCKALDQFEKPHQPILYLAGMLHSVEDAMEMHKRLKLS
AYERDLARFITQEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQLLKYSGK
LELYNQLKSWVKPDFPIRGNALAQRGLNGMRLGLVMDELKLLWADSDFQL
THDDLLKWIPNVLKKIPSAPGKVKRMK*
BS06736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-PB | 477 | CG2100-PB | 1..477 | 1..477 | 2494 | 100 | Plus |
| CG2100-PA | 477 | CG2100-PA | 1..477 | 1..477 | 2494 | 100 | Plus |
