Clone BS06738 Report

Search the DGRC for BS06738

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptHsc70-5-RA
Protein status:BS06738.pep: full length peptide match
Sequenced Size:2093

Clone Sequence Records

BS06738.3prime Sequence

868 bp (790 high quality bases) assembled on 2005-12-04

> BS06738.3prime
ATGGTCTAGAAAGCTTTTAGTTCTTCTCTTCCTTCTTGGCTTCGCCGGAA
GTGTCGCTCGAACTGCTGCTGTCGGAGGAGCCGGCTCCTGCGTTGCTCTC
GCGCTCAGCGGACATCTTCTTGTAGGCCAGCTCGAACAGCTTCAGAGAGG
ACTGCTGCAGGGAGGAAGTGGCTTTCCTGACCTCCTCAAGGTCGGCAGTC
TCCTTGTTAGCCAGCAGCGTGCGCAGATCGGCAATTTCCTTCTTTAGCTT
CTCGCACTCCTCAGCGGGCAGCTGGCTCTTGAACTCCTCCATCTTGGTCT
CAGTATCGTGGACTATGCTCTCGCCCTGGTTGACGATCTCGATAAGCTCA
CGCTTTTGCTTGTCAGCCGTTGCGTATTCCTCGGCCTTTTTGATCATGTT
CTCGATTTCGTCCTTGCTCAGACCACCGCTGGACTGAATAACGATCTGCT
GTTCCTTGCCAGTGCCCTTGTCCTTTGCAGACACGTGCACAATACCGTTT
GCATCAATATCGAAAACAACCTCGATCTGGGGCACGCCACGAGGTGCAGG
GGGAATTCCGACCAGTGTAAAGGAGCCGAGAAGCTTATTGTCGTTAGCCA
TCTCACGCTCGCCCTGGTGCACCTTGATCTCCACCTGGGTCTGACCATCG
CTGGCCGTCGAGAAGACTTGCGACTTCTTGGTGGGAATAGTGGTGTTGCG
GGAGATCAAGCGGGTGAAAACTCCACCCAGGGTCTCAATACCCAGCGAGA
GGGGAGTAACGTCGAGCAGAAGCACATCGGTGACATCTCCGGCCAACACA
CCACCCTGAACAGCGGCACCAACGGCCACAGCCTCATCGGGATTCACAGA
ACGCGACGGCTGGCGTCC

BS06738.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8542-PA 2061 Hsc70-5-RA 1210..2061 868..17 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-5-RB 2791 CG8542-RB 1348..2200 868..16 4265 100 Minus
Hsc70-5-RA 2922 CG8542-RA 1479..2331 868..16 4265 100 Minus
Hsp68-RA 2231 CG5436-RA 1591..1690 555..456 200 80 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14253553..14254164 257..868 3060 100 Plus
2R 25286936 2R 14253348..14253494 112..258 720 99.3 Plus
2R 25286936 2R 14253189..14253290 16..117 510 100 Plus
3R 32079331 3R 24055621..24055720 456..555 200 80 Plus
3R 32079331 3R 15245676..15245813 629..492 195 76.1 Minus
Blast to na_te.dros performed on 2015-02-09 01:14:45 has no hits.

BS06738.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:34 Download gff for BS06738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8542-PA 1210..2061 17..868 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:51 Download gff for BS06738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8542-PA 1210..2061 17..868 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:52:51 Download gff for BS06738.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-5-RA 1479..2333 11..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:19 Download gff for BS06738.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-5-RA 1479..2333 11..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:19 Download gff for BS06738.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14253187..14253288 11..115 97 <- Plus
2R 14253352..14253492 116..256 100 <- Plus
2R 14253553..14254164 257..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:52:51 Download gff for BS06738.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10140692..10140793 11..115 97 <- Plus
arm_2R 10140857..10140997 116..256 100 <- Plus
arm_2R 10141058..10141669 257..868 100   Plus

BS06738.5prime Sequence

873 bp (844 high quality bases) assembled on 2005-12-04

> BS06738.5prime
GAAGTTATCAGTCGACATGCTGCGCGTACCCAAGTTTCTGCCCCGTCTCG
CCCGCCAGGCCGGCGTGGTACCCTCCCATATGTCCGGAGCTTCTAGCATG
TTCCGCAATCTGCCAGGTGCTAGCAATGGAATATCGTCCCAGCTGCGTTA
CAAGTCCGGTGAGGTCAAAGGTGCTGTTATTGGAATCGATCTGGGAACAA
CCAACTCCTGCCTGGCCGTCATGGAGGGCAAGCAGGCCAAGGTGATTGAA
AACGCCGAGGGAGCCCGGACCACACCCTCCCACGTCGCCTTTACCAAGGA
CGGTGAGCGGCTGGTCGGCATGCCCGCCAAGCGCCAGGCAGTGACAAACT
CGGCCAACACCTTCTATGCCACCAAGCGACTGATTGGCAGACGTTTTGAT
GATCCCGAGGTTAAGAAAGACATCACTAACCTGTCCTACAAGGTGGTCAA
GGCTTCAAATGGCGATGCCTGGGTCTCTTCCACCGACGGCAAGGTGTACT
CTCCATCCCAAATCGGTGCTTTCATCCTGATGAAGATGAAGGAAACCGCT
GAGGCATACCTGAACACTCCCGTGAAGAACGCCGTGGTCACCGTGCCCGC
CTACTTCAACGACTCCCAACGCCAGGCCACCAAGGATGCTGGTCAAATCG
CTGGTCTTAATGTGCTGCGCGTGATCAACGAGCCCACTGCTGCCGCGTTG
GCCTATGGAATGGACAAAACGGAGGACAAAATCATTGCCGTTTACGATTT
GGGTGGCGGCACCTTCGATATTTCGATTTTGGAGATCCAGAAGGGAGTGT
TCGAAGTCAAGTCCACCAATGGTGATACCCTCCTCGGTGGTGAGGACTTT
GACAACCATATCGTCAACTTTCT

BS06738.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8542-PA 2061 Hsc70-5-RA 1..854 17..870 4270 100 Plus
CG8937-PC 1668 Hsc70-1-RC 169..224 584..639 180 92.8 Plus
CG8937-PD 1668 Hsc70-1-RD 169..224 584..639 180 92.8 Plus
CG8937-PA 1926 Hsc70-1-RA 427..482 584..639 180 92.8 Plus
CG5436-PA 1908 Hsp68-RA 427..477 593..643 155 92.1 Plus
CG4147-PB 1971 Hsc70-3-RB 511..564 590..643 145 90.7 Plus
CG4147-PA 1971 Hsc70-3-RA 511..564 590..643 145 90.7 Plus
CG4147-PD 1971 Hsc70-3-RD 511..564 590..643 145 90.7 Plus
CG4147-PC 1971 Hsc70-3-RC 511..564 590..643 145 90.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-5-RB 2791 CG8542-RB 139..992 17..870 4270 100 Plus
Hsc70-5-RA 2922 CG8542-RA 270..1123 17..870 4270 100 Plus
Hsp68-RA 2231 CG5436-RA 576..757 536..717 370 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14254829..14255407 732..154 2895 100 Minus
2R 25286936 2R 14254520..14254657 870..733 690 100 Minus
2R 25286936 2R 14255834..14255923 106..17 450 100 Minus
3R 32079331 3R 24056554..24056735 717..536 370 80.2 Minus
X 23542271 X 11803811..11804130 849..533 350 74.7 Minus
3R 32079331 3R 15244735..15244892 533..690 310 79.7 Plus
3R 32079331 3R 11955739..11955868 717..588 305 82.3 Minus
3R 32079331 3R 11959210..11959339 588..717 305 82.3 Plus
3R 32079331 3R 12467007..12467136 717..588 290 81.5 Minus
3R 32079331 3R 12503173..12503302 588..717 290 81.5 Plus
3R 32079331 3R 12506456..12506585 588..717 290 81.5 Plus
3R 32079331 3R 12509739..12509868 588..717 290 81.5 Plus
3R 32079331 3R 13045825..13045961 572..708 265 79.6 Plus
2R 25286936 2R 14255667..14255715 155..107 245 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:47:04 has no hits.

BS06738.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:35 Download gff for BS06738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8542-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:32:53 Download gff for BS06738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8542-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:03:15 Download gff for BS06738.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-5-RA 263..1126 10..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:04 Download gff for BS06738.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-5-RA 263..1126 10..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:04 Download gff for BS06738.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14254517..14254657 733..873 99 <- Minus
2R 14254829..14255407 154..732 100 <- Minus
2R 14255669..14255715 107..153 100 <- Minus
2R 14255834..14255930 10..106 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:03:15 Download gff for BS06738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10142022..10142162 733..873 99 <- Minus
arm_2R 10142334..10142912 154..732 100 <- Minus
arm_2R 10143174..10143220 107..153 100 <- Minus
arm_2R 10143339..10143435 10..106 96   Minus

BS06738.complete Sequence

2093 bp assembled on 2010-05-10

GenBank Submission: KX802335

> BS06738.complete
GAAGTTATCAGTCGACATGCTGCGCGTACCCAAGTTTCTGCCCCGTCTCG
CCCGCCAGGCCGGCGTGGTACCCTCCCATATGTCCGGAGCTTCTAGCATG
TTCCGCAATCTGCCAGGTGCTAGCAATGGAATATCGTCCCAGCTGCGTTA
CAAGTCCGGTGAGGTCAAAGGTGCTGTTATTGGAATCGATCTGGGAACAA
CCAACTCCTGCCTGGCCGTCATGGAGGGCAAGCAGGCCAAGGTGATTGAA
AACGCCGAGGGAGCCCGGACCACACCCTCCCACGTCGCCTTTACCAAGGA
CGGTGAGCGGCTGGTCGGCATGCCCGCCAAGCGCCAGGCAGTGACAAACT
CGGCCAACACCTTCTATGCCACCAAGCGACTGATTGGCAGACGTTTTGAT
GATCCCGAGGTTAAGAAAGACATCACTAACCTGTCCTACAAGGTGGTCAA
GGCTTCAAATGGCGATGCCTGGGTCTCTTCCACCGACGGCAAGGTGTACT
CTCCATCCCAAATCGGTGCTTTCATCCTGATGAAGATGAAGGAAACCGCT
GAGGCATACCTGAACACTCCCGTGAAGAACGCCGTGGTCACCGTGCCCGC
CTACTTCAACGACTCCCAACGCCAGGCCACCAAGGATGCTGGTCAAATCG
CTGGTCTTAATGTGCTGCGCGTGATCAACGAGCCCACTGCTGCCGCGTTG
GCCTATGGAATGGACAAAACGGAGGACAAAATCATTGCCGTTTACGATTT
GGGTGGCGGCACCTTCGATATTTCGATTTTGGAGATCCAGAAGGGAGTGT
TCGAAGTCAAGTCCACCAATGGTGATACCCTCCTCGGTGGTGAGGACTTT
GACAACCATATCGTCAACTTCCTGGTGGCCGAATTCAAGAAGGATAGTGG
AATTGATATCCGCAAGGACAACATTGCCATGCAGCGACTGAAGGAGGCGG
CCGAGAAGGCCAAGTGCGAGCTGTCCTCCTCCCAACAGACTGACATCAAT
CTGCCTTATCTGACCATGGATGCCGCCGGTCCCCAGCACATGAACCTGAA
GCTGACACGCTCCAAGCTGGAAAGCCTAGTGGGTGATCTGATCAAGCGTA
CTATCCAGCCCTGCCAGAAGGCTCTGTCCGATGCCGAGGTTTCCAAGTCC
GAGATCGGCGAGGTGCTGCTGGTTGGCGGTATGACCCGTATGCCCAAGGT
GCAGTCCACCGTGCAGGAACTGTTTGGACGCCAGCCGTCGCGTTCTGTGA
ATCCCGATGAGGCTGTGGCCGTTGGTGCCGCTGTTCAGGGTGGTGTGTTG
GCCGGAGATGTCACCGATGTGCTTCTGCTCGACGTTACTCCCCTCTCGCT
GGGTATTGAGACCCTGGGTGGAGTTTTCACCCGCTTGATCTCCCGCAACA
CCACTATTCCCACCAAGAAGTCGCAAGTCTTCTCGACGGCCAGCGATGGT
CAGACCCAGGTGGAGATCAAGGTGCACCAGGGCGAGCGTGAGATGGCTAA
CGACAATAAGCTTCTCGGCTCCTTTACACTGGTCGGAATTCCCCCTGCAC
CTCGTGGCGTGCCCCAGATCGAGGTTGTTTTCGATATTGATGCAAACGGT
ATTGTGCACGTGTCTGCAAAGGACAAGGGCACTGGCAAGGAACAGCAGAT
CGTTATTCAGTCCAGCGGTGGTCTGAGCAAGGACGAAATCGAGAACATGA
TCAAAAAGGCCGAGGAATACGCAACGGCTGACAAGCAAAAGCGTGAGCTT
ATCGAGATCGTCAACCAGGGCGAGAGCATAGTCCACGATACTGAGACCAA
GATGGAGGAGTTCAAGAGCCAGCTGCCCGCTGAGGAGTGCGAGAAGCTAA
AGAAGGAAATTGCCGATCTGCGCACGCTGCTGGCTAACAAGGAGACTGCC
GACCTTGAGGAGGTCAGGAAAGCCACTTCCTCCCTGCAGCAGTCCTCTCT
GAAGCTGTTCGAGCTGGCCTACAAGAAGATGTCCGCTGAGCGCGAGAGCA
ACGCAGGAGCCGGCTCCTCCGACAGCAGCAGTTCGAGCGACACTTCCGGC
GAAGCCAAGAAGGAAGAGAAGAACTAAAAGCTTTCTAGACCAT

BS06738.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-5-RB 2061 CG8542-PB 1..2061 17..2077 10305 100 Plus
Hsc70-5-RA 2061 CG8542-PA 1..2061 17..2077 10305 100 Plus
Hsp68-RA 1908 CG5436-PA 370..551 536..717 370 80.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-5-RB 2791 CG8542-RB 139..2200 17..2078 10310 100 Plus
Hsc70-5-RA 2922 CG8542-RA 270..2331 17..2078 10310 100 Plus
Hsp68-RA 2231 CG5436-RA 576..757 536..717 370 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14253553..14254657 1837..733 5525 100 Minus
2R 25286936 2R 14254829..14255407 732..154 2895 100 Minus
2R 25286936 2R 14253348..14253494 1982..1836 720 99.3 Minus
2R 25286936 2R 14253189..14253290 2078..1977 510 100 Minus
2R 25286936 2R 14255834..14255923 106..17 450 100 Minus
3R 32079331 3R 24056554..24056735 717..536 370 80.2 Minus
X 23542271 X 11803811..11804130 849..533 350 74.7 Minus
3R 32079331 3R 15244735..15244892 533..690 310 79.7 Plus
3R 32079331 3R 11955739..11955868 717..588 305 82.3 Minus
3R 32079331 3R 11959210..11959339 588..717 305 82.3 Plus
3R 32079331 3R 12509739..12509868 588..717 290 81.5 Plus
3R 32079331 3R 12467007..12467136 717..588 290 81.5 Minus
3R 32079331 3R 12503173..12503302 588..717 290 81.5 Plus
3R 32079331 3R 12506456..12506585 588..717 290 81.5 Plus
3R 32079331 3R 13045825..13045961 572..708 265 79.6 Plus
2R 25286936 2R 14255667..14255715 155..107 245 100 Minus
3L 28110227 3L 13976138..13976235 584..681 235 82.7 Plus
3R 32079331 3R 24055621..24055720 1638..1539 200 80 Minus
3R 32079331 3R 15245676..15245813 1465..1602 195 76.1 Plus
Blast to na_te.dros performed on 2014-11-28 02:42:35 has no hits.

BS06738.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:01 Download gff for BS06738.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-5-RA 270..2328 17..2075 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:36 Download gff for BS06738.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-5-RA 270..2328 17..2075 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:31 Download gff for BS06738.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-5-RA 270..2328 17..2075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:31 Download gff for BS06738.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14253192..14253288 1979..2075 100 <- Minus
2R 14253352..14253492 1838..1978 100 <- Minus
2R 14253553..14254657 733..1837 100 <- Minus
2R 14254829..14255407 154..732 100 <- Minus
2R 14255669..14255715 107..153 100 <- Minus
2R 14255834..14255923 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:36 Download gff for BS06738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10140697..10140793 1979..2075 100 <- Minus
arm_2R 10140857..10140997 1838..1978 100 <- Minus
arm_2R 10141058..10142162 733..1837 100 <- Minus
arm_2R 10142334..10142912 154..732 100 <- Minus
arm_2R 10143174..10143220 107..153 100 <- Minus
arm_2R 10143339..10143428 17..106 100   Minus

BS06738.pep Sequence

Translation from 16 to 2076

> BS06738.pep
MLRVPKFLPRLARQAGVVPSHMSGASSMFRNLPGASNGISSQLRYKSGEV
KGAVIGIDLGTTNSCLAVMEGKQAKVIENAEGARTTPSHVAFTKDGERLV
GMPAKRQAVTNSANTFYATKRLIGRRFDDPEVKKDITNLSYKVVKASNGD
AWVSSTDGKVYSPSQIGAFILMKMKETAEAYLNTPVKNAVVTVPAYFNDS
QRQATKDAGQIAGLNVLRVINEPTAAALAYGMDKTEDKIIAVYDLGGGTF
DISILEIQKGVFEVKSTNGDTLLGGEDFDNHIVNFLVAEFKKDSGIDIRK
DNIAMQRLKEAAEKAKCELSSSQQTDINLPYLTMDAAGPQHMNLKLTRSK
LESLVGDLIKRTIQPCQKALSDAEVSKSEIGEVLLVGGMTRMPKVQSTVQ
ELFGRQPSRSVNPDEAVAVGAAVQGGVLAGDVTDVLLLDVTPLSLGIETL
GGVFTRLISRNTTIPTKKSQVFSTASDGQTQVEIKVHQGEREMANDNKLL
GSFTLVGIPPAPRGVPQIEVVFDIDANGIVHVSAKDKGTGKEQQIVIQSS
GGLSKDEIENMIKKAEEYATADKQKRELIEIVNQGESIVHDTETKMEEFK
SQLPAEECEKLKKEIADLRTLLANKETADLEEVRKATSSLQQSSLKLFEL
AYKKMSAERESNAGAGSSDSSSSSDTSGEAKKEEKN*

BS06738.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-5-PB 686 CG8542-PB 1..686 1..686 3416 100 Plus
Hsc70-5-PA 686 CG8542-PA 1..686 1..686 3416 100 Plus
Hsc70-3-PE 656 CG4147-PE 29..624 52..641 1488 52.8 Plus
Hsc70-3-PC 656 CG4147-PC 29..624 52..641 1488 52.8 Plus
Hsc70-3-PD 656 CG4147-PD 29..624 52..641 1488 52.8 Plus