Clone Sequence Records
BS06741.3prime Sequence
900 bp (892 high quality bases) assembled on 2005-12-04
> BS06741.3prime
ATGGTCTAGAAAGCTTTTAAGGCGTTAATCGTTTGGGATCGCGCGGGAAC
ATGGAAGTCTTGCGGATGTTGTCCAATCCCAGATACAGCATCACCACACG
CTCCATTCCAATGCCACCACCAGCATGTGGAGGACATCCATAGCGGAAGG
ACTCGATGTACGCCGCAATCTTGGAGGTATCAATGCCATGGTGCTTGGCT
CGTTCGATTAAGTACTCGGGATCGTGGATACGCTGCGCGCCGGACAGGAT
CTCCTCGCCGCGCATGAACATATCGTAAGAGTTGGAGTAGACCGGATTGT
TTGGATCAGGCATCGTGTAGAAGGGCCGTATCGCTAACGGGAACTTGTCA
AGGATGTAGAAGTCAGTGTCGTACTTGGCCTTGACCAGGCGACCCAACAG
CTTTTCGTTGGGCGTAGACAGATCCTCCTCGTCGCCGGTCTCCACACCAG
CCTCGCGCAACATGGCCACGCCATCGGCGAACTGGAGGATCAGTGGTGGC
TCCAGGAACTTGAAGGCATCCACCTTGTACTGCTGGCCTACAGATTCGAT
TTCCTTAGCGTACTTATCACGCAGTCCCTTGAAAATGGACGTAAACGTGT
TGCCAATCGTGTGCAGCACCTCGTGGTAGTGGTACTTAAAGGCCATTTCC
AGATCAAGGCCTACGAACTCGGTCAAATGCCGATGAGTGTTCGAATCCTC
TGCACGGAACACGGCTCCTACGGTATAGACCTTGTCAAAATCGGCGGCGA
TGGCCATCTGCTTGTACAGCTGCGGCGACTGCGCCAGATAGGCTGAATCC
TTGAAGTAGCTCACGGTGAACACATTGGCGCCTCCCTCACTGGCCGCTGA
AATGATCTTCGGCGTGTGAATCTCTGTGAAGCCCTGCTCAGTGAGAATAT
BS06741.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3821-PA | 1596 | Aats-asp-RA | 713..1596 | 900..17 | 4420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-asp-RB | 2246 | CG3821-RB | 1100..1983 | 900..17 | 4420 | 100 | Minus |
Aats-asp-RC | 1899 | CG3821-RC | 753..1636 | 900..17 | 4420 | 100 | Minus |
Aats-asp-RA | 1976 | CG3821-RA | 830..1713 | 900..17 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12881813..12882532 | 900..181 | 3600 | 100 | Minus |
2R | 25286936 | 2R | 12882741..12882905 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:18:01 has no hits.
BS06741.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:40 Download gff for
BS06741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3821-PA | 713..1596 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:00 Download gff for
BS06741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3821-PA | 713..1596 | 17..900 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:35:08 Download gff for
BS06741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-asp-RA | 830..1715 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:35:43 Download gff for
BS06741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-asp-RA | 830..1715 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:35:43 Download gff for
BS06741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12881813..12882532 | 181..900 | 100 | -> | Minus |
2R | 12882742..12882907 | 13..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:35:08 Download gff for
BS06741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8769318..8770037 | 181..900 | 100 | -> | Minus |
arm_2R | 8770247..8770412 | 13..180 | 98 | | Minus |
BS06741.5prime Sequence
932 bp (848 high quality bases) assembled on 2005-12-04
> BS06741.5prime
GAAGTTATCAGTCGACATGGTCGAGGACAAAGAGCAAGTGGCCAACGGGG
AGCAGGTCTCCAAGAAGGGAGCCAAAAAGCTGGCCAAGGCCGCTAAGAAA
GCCGAACAAAAAGCGGAGAACGCCTCCACCGCGGCGGCCAATAACGCTGG
TGGCGATTCTGCGGAGGATCACGCCGCCGGAAGATATGGCCTCTCGGAAA
TGATCCAATCCAAGGACAAACGCAGTGAACGCAACTTTGTCCCGGTTTCG
GAACTAAGCGGTCAGGTGGGCAAAGGGCTGGTCTGGGTGCGAGGACGCGT
CCACACTTCGAGAGCCAAGGGAAAGCAGTGCTTCCTCATCCTGCGCCAGC
AGAGCAGCACGGTGCAGTGCATCCTGGCTGTCGGTGATGTTATCTCCAAA
CAGATGGTCAAATTTGCGGGAAATATCCCTAAGGAGAGCATTATTGATAT
CCAGGCCAAGCCAGTGGCGGTGTCTAGCAAGATTGAATCCTGCACAGAGC
AGTCGCTGGAATTGTCCGTCGAGCAGATATTCGTAATATCCCAGGCCAAG
GCACAGTTGCCATTGCAAATCGAGGATGCATCGCGTCCCGAGAACGCCGA
TGATGCGGAAGGTCTGAATATTCGCGTGAACCAGGACACGCGCTTGGACA
ACCGAGTGCTCGACCTGAGGACCCCGGCAAATCAGGCCATTTTCCGACTG
GAAGCCGGAGTATGTCGCCTGTTCCGCGATATTCTCACTGAGCAGGGCTT
CACAGAGATTCACACGCCGAAGATCATTTCAGCGGCCAGTGAGGGAGGCG
CCAATGTGTTCACCGTGAGCTACTTCAAGGATTCAGCCTATCTGGCGCAG
TCGCCGCAGCTGTACAAGCAGATGGCCATCGCCGCCGATTTTGACAAGTC
TATACCGTAGGAGCCGTGTTCGTGCAGAGGAT
BS06741.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3821-PA | 1596 | Aats-asp-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-asp-RB | 2246 | CG3821-RB | 388..1305 | 17..932 | 4525 | 99.7 | Plus |
Aats-asp-RC | 1899 | CG3821-RC | 41..958 | 17..932 | 4525 | 99.7 | Plus |
Aats-asp-RA | 1976 | CG3821-RA | 118..1035 | 17..932 | 4525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12881508..12882018 | 424..932 | 2455 | 99.6 | Plus |
2R | 25286936 | 2R | 12880948..12881275 | 96..423 | 1625 | 99.7 | Plus |
2R | 25286936 | 2R | 12880790..12880870 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:34 has no hits.
BS06741.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:41 Download gff for
BS06741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3821-PA | 1..918 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:01 Download gff for
BS06741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3821-PA | 1..918 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:13 Download gff for
BS06741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-asp-RA | 109..1035 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:18 Download gff for
BS06741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-asp-RA | 109..1035 | 9..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:18 Download gff for
BS06741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12880781..12880870 | 9..97 | 95 | -> | Plus |
2R | 12880950..12881275 | 98..423 | 99 | -> | Plus |
2R | 12881508..12882018 | 424..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:13 Download gff for
BS06741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8768286..8768375 | 9..97 | 95 | -> | Plus |
arm_2R | 8768455..8768780 | 98..423 | 99 | -> | Plus |
arm_2R | 8769013..8769523 | 424..932 | 99 | | Plus |
BS06741.complete Sequence
1628 bp (1628 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635604
> BS06741.complete
GAAGTTATCAGTCGACATGGTCGAGGACAAAGAGCAAGTGGCCAACGGGG
AGCAGGTCTCCAAGAAGGGAGCCAAAAAGCTGGCCAAGGCCGCTAAGAAA
GCCGAACAAAAAGCGGAGAACGCCTCCACCGCGGCGGCCAATAACGCTGG
TGGCGATTCTGCGGAGGATCACGCCGCCGGAAGATATGGCCTCTCGGAAA
TGATCCAATCCAAGGACAAACGCAGTGAACGCAACTTTGTCCCGGTTTCG
GAACTAAGCGGTCAGGTGGGCAAAGGGCTGGTCTGGGTGCGAGGACGCGT
CCACACTTCGAGAGCCAAGGGAAAGCAGTGCTTCCTCATCCTGCGCCAGC
AGAGCAGCACGGTGCAGTGCATCCTGGCTGTCGGTGATGTTATCTCCAAA
CAGATGGTCAAATTTGCGGGAAATATCCCTAAGGAGAGCATTATTGATAT
CCAGGCCAAGCCAGTGGCGGTGTCTAGCAAGATTGAATCCTGCACAGAGC
AGTCGCTGGAATTGTCCGTCGAGCAGATATTCGTAATATCCCAGGCCAAG
GCACAGTTGCCATTGCAAATCGAGGATGCATCGCGTCCCGAGAACGCCGA
TGATGCGGAAGGTCTGAATATTCGCGTGAACCAGGACACGCGCTTGGACA
ACCGAGTGCTCGACCTGAGGACCCCGGCAAATCAGGCCATTTTCCGACTG
GAAGCCGGAGTATGTCGCCTGTTCCGCGATATTCTCACTGAGCAGGGCTT
CACAGAGATTCACACGCCGAAGATCATTTCAGCGGCCAGTGAGGGAGGCG
CCAATGTGTTCACCGTGAGCTACTTCAAGGATTCAGCCTATCTGGCGCAG
TCGCCGCAGCTGTACAAGCAGATGGCCATCGCCGCCGATTTTGACAAGGT
CTATACCGTAGGAGCCGTGTTCCGTGCAGAGGATTCGAACACTCATCGGC
ATTTGACCGAGTTCGTAGGCCTTGATCTGGAAATGGCCTTTAAGTACCAC
TACCACGAGGTGCTGCACACGATTGGCAACACGTTTACGTCCATTTTCAA
GGGACTGCGTGATAAGTACGCTAAGGAAATCGAATCTGTAGGCCAGCAGT
ACAAGGTGGATGCCTTCAAGTTCCTGGAGCCACCACTGATCCTCCAGTTC
GCCGATGGCGTGGCCATGTTGCGCGAGGCTGGTGTGGAGACCGGCGACGA
GGAGGATCTGTCTACGCCCAACGAAAAGCTGTTGGGTCGCCTGGTCAAGG
CCAAGTACGACACTGACTTCTACATCCTTGACAAGTTCCCGTTAGCGATA
CGGCCCTTCTACACGATGCCTGATCCAAACAATCCGGTCTACTCCAACTC
TTACGATATGTTCATGCGCGGCGAGGAGATCCTGTCCGGCGCGCAGCGTA
TCCACGATCCCGAGTACTTAATCGAACGAGCCAAGCACCATGGCATTGAT
ACCTCCAAGATTGCGGCGTACATCGAGTCCTTCCGCTATGGATGTCCTCC
ACATGCTGGTGGTGGCATTGGAATGGAGCGTGTGGTGATGCTGTATCTGG
GATTGGACAACATCCGCAAGACTTCCATGTTCCCGCGCGATCCCAAACGA
TTAACGCCTTAAAAGCTTTCTAGACCAT
BS06741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-asp-RB | 1596 | CG3821-PB | 1..1596 | 17..1612 | 7965 | 99.9 | Plus |
Aats-asp-RC | 1596 | CG3821-PC | 1..1596 | 17..1612 | 7965 | 99.9 | Plus |
Aats-asp-RA | 1596 | CG3821-PA | 1..1596 | 17..1612 | 7965 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-asp-RB | 2246 | CG3821-RB | 388..1983 | 17..1612 | 7965 | 99.9 | Plus |
Aats-asp-RC | 1899 | CG3821-RC | 41..1636 | 17..1612 | 7965 | 99.9 | Plus |
Aats-asp-RA | 1976 | CG3821-RA | 118..1713 | 17..1612 | 7965 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12881508..12882532 | 424..1448 | 5125 | 100 | Plus |
2R | 25286936 | 2R | 12880948..12881275 | 96..423 | 1625 | 99.7 | Plus |
2R | 25286936 | 2R | 12882741..12882905 | 1448..1612 | 825 | 100 | Plus |
2R | 25286936 | 2R | 12880790..12880870 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:08:23 has no hits.
BS06741.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:51 Download gff for
BS06741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-asp-RA | 1..1596 | 17..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:40 Download gff for
BS06741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-asp-RA | 74..1680 | 9..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:07 Download gff for
BS06741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-asp-RA | 118..1711 | 17..1610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:52 Download gff for
BS06741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-asp-RA | 74..1680 | 9..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:34 Download gff for
BS06741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-asp-RA | 118..1711 | 17..1610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:34 Download gff for
BS06741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12880790..12880870 | 17..97 | 100 | -> | Plus |
2R | 12880950..12881275 | 98..423 | 99 | -> | Plus |
2R | 12881508..12882532 | 424..1448 | 100 | -> | Plus |
2R | 12882742..12882903 | 1449..1610 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:07 Download gff for
BS06741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8768295..8768375 | 17..97 | 100 | -> | Plus |
arm_2R | 8768455..8768780 | 98..423 | 99 | -> | Plus |
arm_2R | 8769013..8770037 | 424..1448 | 100 | -> | Plus |
arm_2R | 8770247..8770408 | 1449..1610 | 100 | | Plus |
BS06741.pep Sequence
Translation from 16 to 1611
> BS06741.pep
MVEDKEQVANGEQVSKKGAKKLAKAAKKAEQKAENASTAAANNAGGDSAE
DHAAGRYGLSEMIQSKDKRSERNFVPVSELSGQVGKGLVWVRGRVHTSRA
KGKQCFLILRQQSSTVQCILAVGDVISKQMVKFAGNIPKESIIDIQAKPV
AVSSKIESCTEQSLELSVEQIFVISQAKAQLPLQIEDASRPENADDAEGL
NIRVNQDTRLDNRVLDLRTPANQAIFRLEAGVCRLFRDILTEQGFTEIHT
PKIISAASEGGANVFTVSYFKDSAYLAQSPQLYKQMAIAADFDKVYTVGA
VFRAEDSNTHRHLTEFVGLDLEMAFKYHYHEVLHTIGNTFTSIFKGLRDK
YAKEIESVGQQYKVDAFKFLEPPLILQFADGVAMLREAGVETGDEEDLST
PNEKLLGRLVKAKYDTDFYILDKFPLAIRPFYTMPDPNNPVYSNSYDMFM
RGEEILSGAQRIHDPEYLIERAKHHGIDTSKIAAYIESFRYGCPPHAGGG
IGMERVVMLYLGLDNIRKTSMFPRDPKRLTP*
BS06741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-asp-PB | 531 | CG3821-PB | 1..531 | 1..531 | 2713 | 100 | Plus |
Aats-asp-PC | 531 | CG3821-PC | 1..531 | 1..531 | 2713 | 100 | Plus |
Aats-asp-PA | 531 | CG3821-PA | 1..531 | 1..531 | 2713 | 100 | Plus |
Aats-asn-PB | 558 | CG10687-PB | 84..558 | 15..531 | 349 | 25 | Plus |
Aats-asn-PA | 558 | CG10687-PA | 84..558 | 15..531 | 349 | 25 | Plus |