Clone Sequence Records
BS06744.3prime Sequence
900 bp (868 high quality bases) assembled on 2005-12-04
> BS06744.3prime
ATGGTCTAGAAAGCTTCTACAACTGTGGCTCGGTATCGTCAGCACCTCCC
TCCTCGCCCATTTCGTCGTCTGCACACTCTAATGTCATATCTTCCAACAT
CTCCTCCAGTGTGATCTGGGGCACATCACCTCCAGCGGCCTGTACCTCGA
TTGGTATCGTCTTGTTAGTGTCCCGATAGATGTTGACCTGACCGCGGATA
TCCTCGTTTTCCTCGAGATCGTCAAGAAACTCGTGGTAGTCGTACTTGCT
GCGCTCATCGGTAGCCTCCGCCGCCAGATGCTTAATCTTCCACACGCGCT
GACTGAGTCTGGTCTGTCGATCGTAGTGCTTGCGCACAAGAATTACATCC
GGAATTTCATCCGACGACAATTTGTCGAACTCCAGATCGTTGATGTTGGC
CTCTCCGGTGTTGTAGCCCATTACGGAATCGCCCACCTTGAGCAGGTGGC
CCAAGTGGGAGCGTGTGTGAATGGGGTTATCGTTGATGCCCAGCTCCGAG
GCGCGCACCACCCAAATGTCGCAGAGAGCGTGCTTGAAGGAAACCTGCCC
TTGACCAGGATAGGTCTTTCGATCCTTTTCCATGATCACATCAATGTCCA
TGACGACGTACTCAACCAGCTGCTTGGGATTGCAGACGGCCTCAAAGGGA
GCTCTGAAATAGACCTGCGAGGTGAGTTCTGCAATCTGTGCGGTCAGGGG
ATCAATCAAGTGAATGCTGCTAGACACCCGGTTGACCAGAACCAATGGCG
AGAGATTTCCCAGCTGGTGGCGCAGCTTTTTGGACAGGCAAACTGCACTG
TCCTTCGATACTGGTGCTATTTCCACTGACCAGTTGTACTTGTAGTTATA
GTTGTTGCTGTGGATGTCGTGAGAGATGAGACGCTTCGAGGGTGTTACTT
BS06744.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3460-PA | 1566 | Nmd3-RA | 685..1566 | 898..17 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmd3-RA | 1791 | CG3460-RA | 815..1696 | 898..17 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2182913..2183555 | 17..659 | 3215 | 100 | Plus |
| X | 23542271 | X | 2183610..2183854 | 654..898 | 1210 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:17:19 has no hits.
BS06744.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:47 Download gff for
BS06744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-PA | 682..1566 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:09 Download gff for
BS06744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3460-PA | 682..1566 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:34:56 Download gff for
BS06744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 812..1702 | 10..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:30:57 Download gff for
BS06744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 812..1702 | 10..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:30:57 Download gff for
BS06744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2182907..2183549 | 10..653 | 99 | <- | Plus |
| X | 2183610..2183856 | 654..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:34:56 Download gff for
BS06744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2076940..2077582 | 10..653 | 99 | <- | Plus |
| arm_X | 2077643..2077889 | 654..900 | 99 | | Plus |
BS06744.5prime Sequence
930 bp (792 high quality bases) assembled on 2005-12-04
> BS06744.5prime
GAAGTTATCAGTCGACATGGATCACGAATACGTTGGGGTTAGCCCGCTGG
GCGCAGCGGACGGCAAGGGCGCCGGATCGAACGCCGTCATCCTGTGCTGC
GAGTGCGGAGTGGCCATCCAGCCGAATCCGGCCAACATGTGCGTCACCTG
CCTGCGCAACCATGTCGACATCACGGAGAACATCCCAAAGCAGGCCGTGC
TCCACTTCTGTCGTAATTGCGAGCGCTATCTGCAACCGCCGAACGAGTGG
ATACAGGCCGCCTTGGAGTCCCGCGAACTCTTGGCCATTTGCCTTAAGAA
GCTAAAAGGCCTGAAGGAAGTGAAGTTGGTGGATGCCGGCTTCATCTGGA
CAGAACAGCACTCCAAGCGCATAAAGGTGAAGCTGACTGTGCATGGGGAG
ATCATCGGGGGAACGATGCTCCAGCAGGTATTCGTGGTGGAGTTCACTGT
GCAGAACCAGATGTGCAACGACTGCCATCGGACCGAGGCCAAGGACTTCT
GGCGCTGCCTCGTGCAGGTTCGTCAGCGGGCCGAGAACAAGAAAACCTTT
TACTATCTGGAACAGCTGATCCTTAAGCACAAAGCCCACGAGAACACTCT
GGGCATAAAGCCGGAGCATGGCGGCCTGGATTTCTTCTATGCCAATGATA
ATCATGCCCGGCGCATGGTTGATTTCCTCCTGACCATGGTGCCCGGCAAG
GTAACAACCTCGAAGCGTCTCATCTCTCACGACATCCACAGCAACAACTA
TAACTACAAGTACAACTGGTCAGTGGAAATAGCACCAGTATCGAAGGACA
GTGCAGTTTGCCTGTCCAAAAAGCTGCGCCACCAGCTGGGAAATCTCTCG
CCATTGGTTCTGGTCAACCGGGTGTCTAGCAGCATTCACTTGATTGATCC
CCTGACCGCACAGATTGCAGAACTCACCTC
BS06744.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3460-PA | 1566 | Nmd3-RA | 1..914 | 17..930 | 4570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmd3-RA | 1791 | CG3460-RA | 130..1044 | 16..930 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2183625..2184539 | 930..16 | 4575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:36:56 has no hits.
BS06744.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:48 Download gff for
BS06744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:10 Download gff for
BS06744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3460-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:26:44 Download gff for
BS06744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 130..1044 | 16..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:46:37 Download gff for
BS06744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 130..1044 | 16..930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:46:37 Download gff for
BS06744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2183625..2184539 | 16..930 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:26:44 Download gff for
BS06744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2077658..2078572 | 16..930 | 100 | | Minus |
BS06744.complete Sequence
1598 bp (1598 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635605
> BS06744.complete
GAAGTTATCAGTCGACATGGATCACGAATACGTTGGGGTTAGCCCGCTGG
GCGCAGCGGACGGCAAGGGCGCCGGATCGAACGCCGTCATCCTGTGCTGC
GAGTGCGGAGTGGCCATCCAGCCGAATCCGGCCAACATGTGCGTCACCTG
CCTGCGCAACCATGTCGACATCACGGAGAACATCCCAAAGCAGGCCGTGC
TCCACTTCTGTCGTAATTGCGAGCGCTATCTGCAACCGCCGAACGAGTGG
ATACAGGCCGCCTTGGAGTCCCGCGAACTCTTGGCCATTTGCCTTAAGAA
GCTAAAAGGCCTGAAGGAAGTGAAGTTGGTGGATGCCGGCTTCATCTGGA
CAGAACAGCACTCCAAGCGCATAAAGGTGAAGCTGACTGTGCATGGGGAG
ATCATCGGGGGAACGATGCTCCAGCAGGTATTCGTGGTGGAGTTCACTGT
GCAGAACCAGATGTGCAACGACTGCCATCGGACCGAGGCCAAGGACTTCT
GGCGCTGCCTCGTGCAGGTTCGTCAGCGGGCCGAGAACAAGAAAACCTTT
TACTATCTGGAACAGCTGATCCTTAAGCACAAAGCCCACGAGAACACTCT
GGGCATAAAGCCGGAGCATGGCGGCCTGGATTTCTTCTATGCCAATGATA
ATCATGCCCGGCGCATGGTTGATTTCCTCCTGACCATGGTGCCCGGCAAG
GTAACAACCTCGAAGCGTCTCATCTCTCACGACATCCACAGCAACAACTA
TAACTACAAGTACAACTGGTCAGTGGAAATAGCACCAGTATCGAAGGACA
GTGCAGTTTGCCTGTCCAAAAAGCTGCGCCACCAGCTGGGAAATCTCTCG
CCATTGGTTCTGGTCAACCGGGTGTCTAGCAGCATTCACTTGATTGATCC
CCTGACCGCACAGATTGCAGAACTCACCTCGCAGGTCTATTTCAGAGCTC
CCTTTGAGGCCGTCTGCAATCCCAAGCAGCTGGTTGAGTACGTCGTCATG
GACATTGATGTGATCATGGAAAAGGATCGAAAGACCTATCCTGGTCAAGG
GCAGGTTTCCTTCAAGCACGCTCTCTGCGACATTTGGGTGGTGCGCGCCT
CGGAGCTGGGCATCAACGATAACCCCATTCACACACGCTCCCACTTGGGC
CACCTGCTCAAGGTGGGCGATTCCGTAATGGGCTACAACACCGGAGAGGC
CAACATCAACGATCTGGAGTTCGACAAATTGTCGTCGGATGAAATTCCGG
ATGTAATTCTTGTGCGCAAGCACTACGATCGACAGACCAGACTCAGTCAG
CGCGTGTGGAAGATTAAGCATCTGGCGGCGGAGGCTACCGATGAGCGCAG
CAAGTACGACTACCACGAGTTTCTTGACGATCTCGAGGAAAACGAGGATA
TCCGCGGTCAGGTCAACATCTATCGGGACACTAACAAGACGATACCAATC
GAGGTACAGGCCGCTGGAGGTGATGTGCCCCAGATCACACTGGAGGAGAT
GTTGGAAGATATGACATTAGAGTGTGCAGACGACGAAATGGGCGAGGAGG
GAGGTGCTGACGATACCGAGCCACAGTTGTAGAAGCTTTCTAGACCAT
BS06744.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmd3-RA | 1566 | CG3460-PA | 1..1566 | 17..1582 | 7830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmd3-RA | 1791 | CG3460-RA | 130..1696 | 16..1582 | 7835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2183610..2184539 | 945..16 | 4650 | 100 | Minus |
| X | 23542271 | X | 2182913..2183555 | 1582..940 | 3215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:05:59 has no hits.
BS06744.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:52 Download gff for
BS06744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 1..1566 | 17..1582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:41 Download gff for
BS06744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 112..1684 | 16..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:57 Download gff for
BS06744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 131..1696 | 17..1582 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:53 Download gff for
BS06744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 112..1684 | 16..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:55 Download gff for
BS06744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmd3-RA | 131..1696 | 17..1582 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:55 Download gff for
BS06744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2182913..2183549 | 946..1582 | 100 | <- | Minus |
| X | 2183610..2184538 | 17..945 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:57 Download gff for
BS06744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2076946..2077582 | 946..1582 | 100 | <- | Minus |
| arm_X | 2077643..2078571 | 17..945 | 100 | | Minus |
BS06744.pep Sequence
Translation from 16 to 1581
> BS06744.pep
MDHEYVGVSPLGAADGKGAGSNAVILCCECGVAIQPNPANMCVTCLRNHV
DITENIPKQAVLHFCRNCERYLQPPNEWIQAALESRELLAICLKKLKGLK
EVKLVDAGFIWTEQHSKRIKVKLTVHGEIIGGTMLQQVFVVEFTVQNQMC
NDCHRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPE
HGGLDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYN
WSVEIAPVSKDSAVCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQI
AELTSQVYFRAPFEAVCNPKQLVEYVVMDIDVIMEKDRKTYPGQGQVSFK
HALCDIWVVRASELGINDNPIHTRSHLGHLLKVGDSVMGYNTGEANINDL
EFDKLSSDEIPDVILVRKHYDRQTRLSQRVWKIKHLAAEATDERSKYDYH
EFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAAGGDVPQITLEEMLEDMT
LECADDEMGEEGGADDTEPQL*
BS06744.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmd3-PA | 521 | CG3460-PA | 1..521 | 1..521 | 2760 | 100 | Plus |
