Clone BS06747 Report

Search the DGRC for BS06747

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG10970-RA
Protein status:BS06747.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06747.3prime Sequence

342 bp (341 high quality bases) assembled on 2005-12-04

> BS06747.3prime
ATGGTCTAGAAAGCTTTCACTTTAGGTTCACCTTGATTTCGAAGGTCTTG
TAGGTGTATTCCTGGATGACTTTCAGATTCTTAATAATGAACTCCTTGAT
GGCCTGCACGTAATCGGCGGCGGCCAGGATGAGCTTCTTAAAGGCATCGA
TCACCTTGCCCTCGCCCTCCAGACGACCCTTGAACTTCTCCTCCGACACC
TGGGCAATGAATCCCCGCAGTCCCAGTGCATTGGCCTGGACCAGTGCAAA
CAGCTCGAAAGCATCCTTGGGCACCCTGCCACGCACCTCAAAGTCACAGC
ACAAGATCTCCTCCTTTTGGCCTGCCATGTCGACTGATAACT

BS06747.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-PA 312 CG10970-RA 1..312 328..17 1560 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-RB 1810 CG10970-RB 1339..1655 333..17 1570 99.7 Minus
CG10970-RA 589 CG10970-RA 121..437 333..17 1570 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9069754..9070070 17..333 1570 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 17:07:45 has no hits.

BS06747.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:51 Download gff for BS06747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-PA 1..312 17..328 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:14 Download gff for BS06747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-PA 1..312 17..328 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:19 Download gff for BS06747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 22..344 11..340 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:44 Download gff for BS06747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 117..439 11..340 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:44 Download gff for BS06747.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9069752..9070074 11..340 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:19 Download gff for BS06747.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8963785..8964107 11..340 97   Plus

BS06747.5prime Sequence

342 bp (341 high quality bases) assembled on 2005-12-04

> BS06747.5prime
GAAGTTATCAGTCGACATGGCAGGCCAAAAGGAGGAGATCTTGTGCTGTG
ACTTTGAGGTGCGTGGCAGGGTGCCCAAGGATGCTTTCGAGCTGTTTGCA
CTGGTCCAGGCCAATGCACTGGGACTGCGGGGATTCATTGCCCAGGTGTC
GGAGGAGAAGTTCAAGGGTCGTCTGGAGGGCGAGGGCAAGGTGATCGATG
CCTTTAAGAAGCTCATCCTGGCCGCCGCCGATTACGTGCAGGCCATCAAG
GAGTTCATTATTAAGAATCTGAAAGTCATCCAGGAATACACCTACAAGAC
CTTCGAAATCAAGGTGAACCTAAAGTGAAAGCTTTCTAGACC

BS06747.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-PA 312 CG10970-RA 1..312 17..328 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-RB 1810 CG10970-RB 1339..1655 12..328 1570 99.7 Plus
CG10970-RA 589 CG10970-RA 121..437 12..328 1570 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9069754..9070070 328..12 1570 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 07:28:00 has no hits.

BS06747.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:52 Download gff for BS06747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-PA 1..312 17..328 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:16 Download gff for BS06747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-PA 1..312 17..328 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:22:27 Download gff for BS06747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 22..344 5..334 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:02:33 Download gff for BS06747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 117..439 5..334 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:02:33 Download gff for BS06747.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9069752..9070074 5..334 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:22:27 Download gff for BS06747.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8963785..8964107 5..334 97   Minus

BS06747.complete Sequence

344 bp (344 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635606

> BS06747.complete
GAAGTTATCAGTCGACATGGCAGGCCAAAAGGAGGAGATCTTGTGCTGTG
ACTTTGAGGTGCGTGGCAGGGTGCCCAAGGATGCTTTCGAGCTGTTTGCA
CTGGTCCAGGCCAATGCACTGGGACTGCGGGGATTCATTGCCCAGGTGTC
GGAGGAGAAGTTCAAGGGTCGTCTGGAGGGCGAGGGCAAGGTGATCGATG
CCTTTAAGAAGCTCATCCTGGCCGCCGCCGATTACGTGCAGGCCATCAAG
GAGTTCATTATTAAGAATCTGAAAGTCATCCAGGAATACACCTACAAGAC
CTTCGAAATCAAGGTGAACCTAAAGTGAAAGCTTTCTAGACCAT

BS06747.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-RB 312 CG10970-PB 1..312 17..328 1560 100 Plus
CG10970-RA 312 CG10970-PA 1..312 17..328 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-RB 1810 CG10970-RB 1339..1655 12..328 1570 99.7 Plus
CG10970-RA 589 CG10970-RA 121..437 12..328 1570 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9069754..9070070 328..12 1570 99.7 Minus
Blast to na_te.dros performed on 2014-11-26 15:45:02 has no hits.

BS06747.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:47 Download gff for BS06747.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 1..312 17..328 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:24 Download gff for BS06747.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 1335..1657 5..334 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:34 Download gff for BS06747.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 31..341 17..327 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:48 Download gff for BS06747.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 1335..1657 5..334 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:51 Download gff for BS06747.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 126..436 17..327 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:51 Download gff for BS06747.complete
Subject Subject Range Query Range Percent Splice Strand
X 9069755..9070065 17..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:34 Download gff for BS06747.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8963788..8964098 17..327 100   Minus

BS06747.pep Sequence

Translation from 16 to 327

> BS06747.pep
MAGQKEEILCCDFEVRGRVPKDAFELFALVQANALGLRGFIAQVSEEKFK
GRLEGEGKVIDAFKKLILAAADYVQAIKEFIIKNLKVIQEYTYKTFEIKV
NLK*

BS06747.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-PB 103 CG10970-PB 1..103 1..103 514 100 Plus
CG10970-PA 103 CG10970-PA 1..103 1..103 514 100 Plus