Clone BS06749 Report

Search the DGRC for BS06749

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptAats-tyr-RA
Protein status:BS06749.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06749.3prime Sequence

865 bp (807 high quality bases) assembled on 2005-12-04

> BS06749.3prime
ATGGTCTAGAAAGCTTTTATTTAATGGAGCAGTTGGCCAGCTTGCTGGAA
AGCTTTTCGCCCTCGGGCGTCAGCAGGAAGTTGTCCTTCCACACGGCCAG
TCCATCGCTGTTCGTCTTGAAGTCGGCGGAGAGTTTCTCCCACACCTTCT
TCTTGGGATTAAGCTGCTCATCGGGCGTGCCACTGAATCCCTCGAAGGAG
AGGCGACTGCCAGCAGTAGCAGTGGCTGGCAGCACAATAGGCTCCACCAC
CGTGTGGTCAGCGTTGGAGGTGCACAGAACCATGCCCTCGGACAAGATGC
CGCGCATCTTGGACGGCTTCAGGTTGCAAAGAACCGCCACCAATCGCTGG
TTCAGCTCCTCCTCGGTGACAAACTTCACCAGGCCACTAATAATCGTTCT
GGGTTGCGCCTCAGCCAAGTCTATCTTCAGCACATATAGAGTATCGGCAT
CTGGATGACGGGCCACCTCGACGACCTTGCCCACGCGGATATCCAGGCGA
TGGGGTGCATCTTCGTCAGCTCCAGCAGCGGGAGCAGCTCCTGCCTTCAC
CTTGGCAGGCGGTGGATAAGCAGCAGCACTCAGTTTTTGCAGTTCTGGGT
TTTCAAAGGCCTTTCGAATGGGATCTAGCAGTCGGTTGATGTACTTCTCC
ACGGTGGCCTTCAGGTCACCCGGGTGCAGTTTGTCCTCCGCGTAGTACTT
CTCCAGATCCTCGTATTTCAGGAAGGTAACATCGCCGCCATGCTCCGCCT
CGCGGTTAACCTCGAAGCCTTCGCCTTCCTTGAACAGCGAGAACAGGACG
TGCTTCACGAAGGACAGCAGGCCGTTGTCGGCAATGTTTCCCGGCTCACA
GAAAGCCTTCTTCAG

BS06749.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4561-PA 1578 Aats-tyr-RA 730..1578 865..17 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-RA 1771 CG4561-RA 789..1644 865..9 4260 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16417789..16418112 264..587 1620 100 Plus
3L 28110227 3L 16418175..16418452 588..865 1390 100 Plus
3L 28110227 3L 16417481..16417736 15..270 1265 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 21:37:18 has no hits.

BS06749.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:55 Download gff for BS06749.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4561-PA 730..1578 17..865 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:19 Download gff for BS06749.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4561-PA 730..1578 17..865 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:14:09 Download gff for BS06749.3prime
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 789..1651 1..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:02 Download gff for BS06749.3prime
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 789..1651 1..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:02 Download gff for BS06749.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16417468..16417729 1..263 98 <- Plus
3L 16417789..16418112 264..587 100 <- Plus
3L 16418175..16418452 588..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:14:09 Download gff for BS06749.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16410568..16410829 1..263 98 <- Plus
arm_3L 16410889..16411212 264..587 100 <- Plus
arm_3L 16411275..16411552 588..865 100   Plus

BS06749.5prime Sequence

908 bp (750 high quality bases) assembled on 2005-12-04

> BS06749.5prime
GAAGTTATCAGTCGACATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGC
TGATAACGCGCAATCTGCAGGAGACGCTCGGCGATGACAAGCTGACCAAG
ATCCTGGCGGAGCGCGATCTAAAGATCTACTGGGGAACGGCGACGACGGG
CAAGCCACATGTCGCCTATTTCGTGCCCATGTCGAAGATTGCCGATTTCC
TGAAGGCAGGATGCGAAGTGACCATCCTGTTCGCCGATCTCCACGCCTAT
CTGGACAACATGAAGGCACCGTGGTCTCTCCTGGAGCTGCGAACCAAGTA
CTACGAACAGGTCATCAAGGCCATGTTGAGCTCCATCGGCGTTCCGCTGG
AGAAACTGAAGTTCGTCAAGGGCAGCGACTATCAGCTGTCCAAGGAGTAC
ACCCTGGATGTATACAAGCTCAGCTCCGTGGTCACGCAACACGATGCCAA
GAAGGCGGGCGCAGAGGTGGTCAAACAGGTGGAGTACCCACTGCTCTCCG
GTTTGCTTTATCCTGGTCTGCAGGCTCTGGACGAGGAGTACCTCAAGGTG
GACGCACAATTCGGTGGCGTGGATCAGCGCAAGATCTTTACCTTCTCAGA
GAAGTATCTGCCGCAGTTGGGCTACGAAAAGCGCATTCACTTCATGAATC
CCATGGTTCCCGGCTTGGCTGGTGGCAAGATGTCCTCTTCCGAGGAGGAC
TCAAAGATCGATCTTCTGGACTCCCCGGCCAACGTGAAGAAGAAGCTGAA
GAAGGCTTTCTGTGAGCCGGGAAACATTGCCGACAACGGCCTGCTGTCCT
TCGTGAAGCACGTCCTGTTCTCGCTGTTCAAGGAAGGCGAAAGCTTCGAG
GTTAACCGCGAGGCGGAGCATGGCGGCGATGTTACTTTCCTGAAATACGA
GGATCTGG

BS06749.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4561-PA 1578 Aats-tyr-RA 1..892 17..908 4410 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-RA 1771 CG4561-RA 60..951 17..908 4430 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16418604..16419243 656..17 3200 100 Minus
3L 28110227 3L 16418290..16418542 908..656 1235 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 04:39:52 has no hits.

BS06749.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:50:56 Download gff for BS06749.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4561-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:21 Download gff for BS06749.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4561-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:08:25 Download gff for BS06749.5prime
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 60..951 17..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:50 Download gff for BS06749.5prime
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 60..951 17..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:50 Download gff for BS06749.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16418290..16418541 657..908 99 <- Minus
3L 16418604..16419243 17..656 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:08:25 Download gff for BS06749.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16411390..16411641 657..908 99 <- Minus
arm_3L 16411704..16412343 17..656 100   Minus

BS06749.complete Sequence

1610 bp (1610 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635607

> BS06749.complete
GAAGTTATCAGTCGACATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGC
TGATAACGCGCAATCTGCAGGAGACGCTCGGCGATGACAAGCTGACCAAG
ATCCTGGCGGAGCGCGATCTAAAGATCTACTGGGGAACGGCGACGACGGG
CAAGCCACATGTCGCCTATTTCGTGCCCATGTCGAAGATTGCCGATTTCC
TGAAGGCAGGATGCGAAGTGACCATCCTGTTCGCCGATCTCCACGCCTAT
CTGGACAACATGAAGGCACCGTGGTCTCTCCTGGAGCTGCGAACCAAGTA
CTACGAACAGGTCATCAAGGCCATGTTGAGCTCCATCGGCGTTCCGCTGG
AGAAACTGAAGTTCGTCAAGGGCAGCGACTATCAGCTGTCCAAGGAGTAC
ACCCTGGATGTATACAAGCTCAGCTCCGTGGTCACGCAACACGATGCCAA
GAAGGCGGGCGCAGAGGTGGTCAAACAGGTGGAGTACCCACTGCTCTCCG
GTTTGCTTTATCCTGGTCTGCAGGCTCTGGACGAGGAGTACCTCAAGGTG
GACGCACAATTCGGTGGCGTGGATCAGCGCAAGATCTTTACCTTCTCAGA
GAAGTATCTGCCGCAGTTGGGCTACGAAAAGCGCATTCACTTCATGAATC
CCATGGTTCCCGGCTTGGCTGGTGGCAAGATGTCCTCTTCCGAGGAGGAC
TCAAAGATCGATCTTCTGGACTCCCCGGCCAACGTGAAGAAGAAGCTGAA
GAAGGCTTTCTGTGAGCCGGGAAACATTGCCGACAACGGCCTGCTGTCCT
TCGTGAAGCACGTCCTGTTCTCGCTGTTCAAGGAAGGCGAAGGCTTCGAG
GTTAACCGCGAGGCGGAGCATGGCGGCGATGTTACCTTCCTGAAATACGA
GGATCTGGAGAAGTACTACGCGGAGGACAAACTGCACCCGGGTGACCTGA
AGGCCACCGTGGAGAAGTACATCAACCGACTGCTAGATCCCATTCGAAAG
GCCTTTGAAAACCCAGAACTGCAAAAACTGAGTGCTGCTGCTTATCCACC
GCCTGCCAAGGTGAAGGCAGGAGCTGCTCCCGCTGCTGGAGCTGACGAAG
ATGCACCCCATCGCCTGGATATCCGCGTGGGCAAGGTCGTCGAGGTGGCC
CGTCATCCAGATGCCGATACTCTATATGTGCTGAAGATAGACTTGGCTGA
GGCGCAACCCAGAACGATTATTAGTGGCCTGGTGAAGTTTGTCACCGAGG
AGGAGCTGAACCAGCGATTGGTGGCGGTTCTTTGCAACCTGAAGCCGTCC
AAGATGCGCGGCATCTTGTCCGAGGGCATGGTTCTGTGCACCTCCAACGC
TGACCACACGGTGGTGGAGCCTATTGTGCTGCCAGCCACTGCTACTGCTG
GCAGTCGCCTCTCCTTCGAGGGATTCAGTGGCACGCCCGATGAGCAGCTT
AATCCCAAGAAGAAGGTGTGGGAGAAACTCTCCGCCGACTTCAAGACGAA
CAGCGATGGACTGGCCGTGTGGAAGGACAACTTCCTGCTGACGCCCGAGG
GCGAAAAGCTTTCCAGCAAGCTGGCCAACTGCTCCATTAAATAAAAGCTT
TCTAGACCAT

BS06749.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-RA 1578 CG4561-PA 1..1578 17..1594 7890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-RA 1771 CG4561-RA 60..1639 17..1596 7900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16418604..16419243 656..17 3200 100 Minus
3L 28110227 3L 16418175..16418542 1023..656 1840 100 Minus
3L 28110227 3L 16417789..16418112 1347..1024 1620 100 Minus
3L 28110227 3L 16417481..16417736 1596..1341 1265 99.6 Minus
Blast to na_te.dros performed on 2014-11-27 15:00:20 has no hits.

BS06749.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:40 Download gff for BS06749.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1578 17..1594 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:29 Download gff for BS06749.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 53..1644 17..1610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:53 Download gff for BS06749.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 60..1635 17..1592 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:41 Download gff for BS06749.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 53..1644 17..1610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:46 Download gff for BS06749.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 60..1635 17..1592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:46 Download gff for BS06749.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16417789..16418112 1024..1347 100 <- Minus
3L 16418175..16418541 657..1023 100 <- Minus
3L 16417485..16417729 1348..1592 100 <- Minus
3L 16418604..16419243 17..656 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:53 Download gff for BS06749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16410585..16410829 1348..1592 100 <- Minus
arm_3L 16410889..16411212 1024..1347 100 <- Minus
arm_3L 16411275..16411641 657..1023 100 <- Minus
arm_3L 16411704..16412343 17..656 100   Minus

BS06749.pep Sequence

Translation from 16 to 1593

> BS06749.pep
MVGITPAEKKALITRNLQETLGDDKLTKILAERDLKIYWGTATTGKPHVA
YFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWSLLELRTKYYEQVI
KAMLSSIGVPLEKLKFVKGSDYQLSKEYTLDVYKLSSVVTQHDAKKAGAE
VVKQVEYPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTFSEKYLPQ
LGYEKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDSPANVKKKLKKAFCE
PGNIADNGLLSFVKHVLFSLFKEGEGFEVNREAEHGGDVTFLKYEDLEKY
YAEDKLHPGDLKATVEKYINRLLDPIRKAFENPELQKLSAAAYPPPAKVK
AGAAPAAGADEDAPHRLDIRVGKVVEVARHPDADTLYVLKIDLAEAQPRT
IISGLVKFVTEEELNQRLVAVLCNLKPSKMRGILSEGMVLCTSNADHTVV
EPIVLPATATAGSRLSFEGFSGTPDEQLNPKKKVWEKLSADFKTNSDGLA
VWKDNFLLTPEGEKLSSKLANCSIK*

BS06749.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-PA 525 CG4561-PA 1..525 1..525 2695 100 Plus
CG8235-PA 323 CG8235-PA 148..323 346..525 426 50.8 Plus