Clone Sequence Records
BS06756.3prime Sequence
925 bp (766 high quality bases) assembled on 2005-12-04
> BS06756.3prime
ATGGTCTAGAAAGCTTCTAGTACTTTGCGGATTTGTAATCGGGTTCATCG
CCACCAGCACCGCCGCCTCCACCGTCCTTTGGCAGTTTTCGCTTTTGAAT
GATTGTCTGAATCTTTTGCCACTCCCTATCGAGCTCGGCCTTCTCGTTCT
TCTCCGTCTTGTTCTTGCGCGTCTTGCGACCGTCCTGCATCTTGACCCCG
TACTGGAAGGCTGCCTTGGGCAGCGCCTCCTTCGTGCTCATGTAGTCGGA
GTACTCCTCCTGCGTGTCAAAGTCCCAGCGTCCAATGGGCCCCTTTTTAT
TGCCCAAATCCATCTTGGTGTAATCCACCTCATCGTCCGAGTCGTCGATG
GCGTCGTTCATCTCCTCCAGCCCGGGATAGCATTCTGCGTATCCCTCGGG
TTCAGCGAACCGTGCGGCCATGGCCTTCGATATCTTGGGTGGCGGGGGAA
TACTGGATATTATCGGCTCCTCTGATGCCTCCGGCGGGCCGTCTCCAAAG
TAGGACGGGGCGGACTTGCCTTGCTCCTGGCGGTTTCGCTCAGGTCGCGT
GGCAGAAGGTTGGTAGTCCCCTATATCGTCGTAGATATTATCGCCCAAGG
GAGCTGATTTCCCTCCCATGTTCGATGAGGACGAGGTGGCGTGCCGACTG
GAGCCACCATTGCTAGACGACCCACGAAGATTTTCCACCTCCTTTTCGTA
GAACAGCGGTTTGTCCTTGTCGCGCTTTTTGTTCTTCTTGTTGCGACCAC
CGGCACGTAGATAGCTCAGGATTTGGGACAGCTTGTTGATCACAATGTCA
TTGGTGGTCAGCGTGGCAACATCCTCTTGTGACACCGGCACCTCGAACTT
GGAGCGCTTCAGTGTGGTTGGAATATCCGACTCCCCTAGCTCGTCATCCA
GGTCGATCACATAGGCCATCCGTCC
BS06756.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18005-PA | 1674 | CG18005-RA | 766..1674 | 925..17 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beag-RA | 1882 | CG18005-RA | 855..1765 | 925..15 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9063406..9064224 | 107..925 | 4095 | 100 | Plus |
| 3R | 32079331 | 3R | 9063249..9063346 | 15..112 | 475 | 99 | Plus |
Blast to na_te.dros performed 2015-02-12 00:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 7549..7628 | 325..403 | 109 | 63 | Plus |
BS06756.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:09 Download gff for
BS06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18005-PA | 766..1674 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:41 Download gff for
BS06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18005-PA | 766..1674 | 17..925 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:47:59 Download gff for
BS06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beag-RA | 855..1773 | 5..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:53 Download gff for
BS06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beag-RA | 855..1773 | 5..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:53 Download gff for
BS06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9063241..9063340 | 5..106 | 96 | <- | Plus |
| 3R | 9063406..9064224 | 107..925 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:47:59 Download gff for
BS06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4888963..4889062 | 5..106 | 96 | <- | Plus |
| arm_3R | 4889128..4889946 | 107..925 | 100 | | Plus |
BS06756.5prime Sequence
932 bp (853 high quality bases) assembled on 2005-12-04
> BS06756.5prime
GAAGTTATCAGTCGACATGTCGGATGCCCACTTGGAAGCACCGCCTTCGG
TGCGACTAACCAACGATGACTTCCGCAAGCTGCTAGCGACGCCCCGAGCT
CCTCCTCCTGGCTCCGGGACGAGCAGCACCTCCGCTGGAGGATCTCTGGC
CACTGCTACCTTTGCCACGCCCTCCACCGCCCCCGGCACGACAGGATTGA
GTGGCGAAAAGAAGAAGGGTCAGAGCAGCAGCGAGCGGAATGATCTGCGT
CGCAAGAAAAAGAACTTCTATGCGGCGCTCAAGAAGCAGGAGGATGTGAA
GCTGCAAGAGCTGTCCGAGAAGTACAGGGACCGAGCACGAGAACGACGCG
ATGGTGCCAATCCAGATTACGTGAACGTGAGCACGCCGGGACACGGAAGC
AGCACCAATGCGTATCGAGCTGTAGCGCCAGATATGAAATCCGGAATCGA
TGCCCAGGAGCGAAGAAGACGTATCATTCAGGAGTCCAAGTTCTTGGGTG
GAGACATCCAGCATACGCATTTGGTGAAGGGTCTTGATTACGCCCTTCTG
CAAAAAGTGCGCTCCGAGCTGCACTCGAAGGAAGCGGAAGAGGAGGAGAT
TGCCGCCGCTGTGGCAAGGGAAAAGCTCGCCGAAGCAGCTGCCGCCGCTG
AGCAATTGGAAGCGGAACGCCGCGAGTCGGAGGATATTAATGCAATCAAT
GGTGCACTAGCGCGCAATATTTACAATCTAGTGCAGGCAAGGCGTTCGAA
AGAAGTTCCCCGCAATGAGCTATTTGCTCCAGGACGGATGGCCTATGTGA
TCGACCTGGATGACGAGCTAGGGGAGTCGGATATTCCAACCACACTGAAG
CGCTCCNAGTTCGAGGTGCCGGTGTCACAAGAGGATGTTGCCACGCTGAC
CACCATGACATTGTGATCAACAAGCTGTCCCA
BS06756.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18005-PA | 1674 | CG18005-RA | 1..889 | 17..905 | 4426 | 99.8 | Plus |
| CG18005-PA | 1674 | CG18005-RA | 890..917 | 905..932 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beag-RA | 1882 | CG18005-RA | 85..1006 | 12..932 | 4559 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9064073..9064994 | 932..12 | 4534 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:32:40 has no hits.
BS06756.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:11 Download gff for
BS06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18005-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:43 Download gff for
BS06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18005-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:26:12 Download gff for
BS06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beag-RA | 76..1005 | 1..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:45:48 Download gff for
BS06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beag-RA | 76..1005 | 1..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:45:48 Download gff for
BS06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9064074..9065003 | 1..931 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:26:12 Download gff for
BS06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4889796..4890725 | 1..931 | 99 | | Minus |
BS06756.complete Sequence
1706 bp assembled on 2007-10-17
GenBank Submission: FJ635609
> BS06756.complete
GAAGTTATCAGTCGACATGTCGGATGCCCACTTGGAAGCACCGCCTTCGG
TGCGACTAACCAACGATGACTTCCGCAAGCTGCTAGCGACGCCCCGAGCT
CCTCCTCCTGGCTCCGGGACGAGCAGCACCTCCGCTGGAGGATCTCTGGC
CACTGCTACCTTTGCCACGCCCTCCACCGCCCCCGGCACGACAGGATTGA
GTGGCGAAAAGAAGAAGGGTCAGAGCAGCAGCGAGCGGAATGATCTGCGT
CGCAAGAAAAAGAACTTCTATGCGGCGCTCAAGAAGCAGGAGGATGTGAA
GCTGCAAGAGCTGTCCGAGAAGTACAGGGACCGAGCACGAGAACGACGCG
ATGGTGCCAATCCAGATTACGTGAACGTGAGCACGCCGGGACACGGAAGC
AGCACCAATGCGTATCGAGCTGTAGCGCCAGATATGAAATCCGGAATCGA
TGCCCAGGAGCGAAGAAGACGTATCATTCAGGAGTCCAAGTTCTTGGGTG
GAGACATCCAGCATACGCATTTGGTGAAGGGTCTTGATTACGCCCTTCTG
CAAAAAGTGCGCTCCGAGCTGCACTCGAAGGAAGCGGAAGAGGAGGAGAT
TGCCGCCGCTGTGGCAAGGGAAAAGCTCGCCGAAGCAGCTGCCGCCGCTG
AGCAATTGGAAGCGGAACGCCGCGAGTCGGAGGATATTAATGCAATCAAT
GGTGCACTAGCGCGCAATATTTACAATCTAGTGCAGGCAAGGCGTTCGAA
AGAAGTTCCCCGCAATGAGCTATTTGCTCCAGGACGGATGGCCTATGTGA
TCGACCTGGATGACGAGCTAGGGGAGTCGGATATTCCAACCACACTGAAG
CGCTCCAAGTTCGAGGTGCCGGTGTCACAAGAGGATGTTGCCACGCTGAC
CACCAATGACATTGTGATCAACAAGCTGTCCCAAATCCTGAGCTATCTAC
GTGCCGGTGGTCGCAACAAGAAGAACAAAAAGCGCGACAAGGACAAACCG
CTGTTCTACGAAAAGGAGGTGGAAAATCTTCGTGGGTCGTCTAGCAATGG
TGGCTCCAGTCGGCACGCCACCTCGTCCTCATCGAACATGGGAGGGAAAT
CAGCTCCCTTGGGCGATAATATCTACGACGATATAGGGGACTACCAACCT
TCTGCCACGCGACCTGAGCGAAACCGCCAGGAGCAAGGCAAGTCCGCCCC
GTCCTACTTTGGAGACGGCCCGCCGGAGGCATCAGAGGAGCCGATAATAT
CCAGTATTCCCCCGCCACCCAAGATATCGAAGGCCATGGCCGCACGGTTC
GCTGAACCCGAGGGATACGCAGAATGCTATCCCGGGCTGGAGGAGATGAA
CGACGCCATCGACGACTCGGACGATGAGGTGGATTACACCAAGATGGATT
TGGGCAATAAAAAGGGGCCCATTGGACGCTGGGACTTTGACACGCAGGAG
GAGTACTCCGACTACATGAGCACGAAGGAGGCGCTGCCCAAGGCAGCCTT
CCAGTACGGGGTCAAGATGCAGGACGGTCGCAAGACGCGCAAGAACAAGA
CGGAGAAGAACGAGAAGGCCGAGCTCGATAGGGAGTGGCAAAAGATTCAG
ACAATCATTCAAAAGCGAAAACTGCCAAAGGACGGTGGAGGCGGCGGTGC
TGGTGGCGATGAACCCGATTACAAATCCGCAAAGTACTAGAAGCTTTCTA
GACCAT
BS06756.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beag-RA | 1674 | CG18005-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beag-RA | 1882 | CG18005-RA | 85..1765 | 12..1692 | 8390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9063406..9064994 | 1600..12 | 7930 | 99.9 | Minus |
| 3R | 32079331 | 3R | 9063249..9063346 | 1692..1595 | 475 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:46:32 has no hits.
BS06756.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:11 Download gff for
BS06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18005-RA | 1..1674 | 17..1690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:22 Download gff for
BS06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18005-RA | 95..1792 | 1..1702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:38 Download gff for
BS06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beag-RA | 90..1763 | 17..1690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:30 Download gff for
BS06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18005-RA | 109..1782 | 17..1690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:13 Download gff for
BS06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beag-RA | 90..1763 | 17..1690 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:13 Download gff for
BS06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9063251..9063340 | 1601..1690 | 100 | <- | Minus |
| 3R | 9063406..9064989 | 17..1600 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:38 Download gff for
BS06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4888973..4889062 | 1601..1690 | 100 | <- | Minus |
| arm_3R | 4889128..4890711 | 17..1600 | 100 | | Minus |
BS06756.pep Sequence
Translation from 16 to 1689
> BS06756.pep
MSDAHLEAPPSVRLTNDDFRKLLATPRAPPPGSGTSSTSAGGSLATATFA
TPSTAPGTTGLSGEKKKGQSSSERNDLRRKKKNFYAALKKQEDVKLQELS
EKYRDRARERRDGANPDYVNVSTPGHGSSTNAYRAVAPDMKSGIDAQERR
RRIIQESKFLGGDIQHTHLVKGLDYALLQKVRSELHSKEAEEEEIAAAVA
REKLAEAAAAAEQLEAERRESEDINAINGALARNIYNLVQARRSKEVPRN
ELFAPGRMAYVIDLDDELGESDIPTTLKRSKFEVPVSQEDVATLTTNDIV
INKLSQILSYLRAGGRNKKNKKRDKDKPLFYEKEVENLRGSSSNGGSSRH
ATSSSSNMGGKSAPLGDNIYDDIGDYQPSATRPERNRQEQGKSAPSYFGD
GPPEASEEPIISSIPPPPKISKAMAARFAEPEGYAECYPGLEEMNDAIDD
SDDEVDYTKMDLGNKKGPIGRWDFDTQEEYSDYMSTKEALPKAAFQYGVK
MQDGRKTRKNKTEKNEKAELDREWQKIQTIIQKRKLPKDGGGGGAGGDEP
DYKSAKY*
BS06756.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beag-PA | 557 | CG18005-PA | 1..557 | 1..557 | 2864 | 100 | Plus |
