Clone BS06758 Report

Search the DGRC for BS06758

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCbs-RA
Protein status:BS06758.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06758.3prime Sequence

858 bp (807 high quality bases) assembled on 2005-12-04

> BS06758.3prime
ATGGTCTAGAAAGCTTTTAGTGGCTGCCGCCGTTGGTGGTGCCATTGGCC
TTGGGCTTCTGCTTGCCGGCGGCAATGAAAGTGGTCACGTCCAGCTTGGT
GGCCAGAGCTTTGAGCTCCACCTTGCCGGCCGGGTTCTTGCCCAGGATGA
GCACGCTGGGGTCCACTTCGAGGACGCGGGCCAACTTGCCCAGAATCTCG
GATTCGTTCAGTCGGATTACTCGTTTGTTGAGCGCCTTGATTGCGGGATC
GGACTGCTGGCGGTTCATGCTCACGATCTGCGTGATCAGCGTCTCCTGAC
CCACGACGCCCAGGACAGAACCATCATCCTGATCCACGACGGGCAGCTGG
TCCACGCGGTGTTTCTTCATCAGGGCAATAGCCTCACCAACAGTTGCATC
CGACTTGAGAATGACCGGGGGAGCGGGTAGCTCCAACTCCGCGATGGCCA
GGCTCCACCACCAGTGACCGTGCTCGTTTACCGGCTCCTTGAAGTTGCGC
GCCTCCATCCAGTTGTCCGACACGAACTTGGTCATGTAGTTGCGTATGCC
ATCGGGCAGAATGACCACGCACCGCTGGCCTTTCTTCAATTTGCGGGCAT
GCTCGAGGGCAGCGTGCATCGCTCCGCCACTGGACCCGCCGCACAACAGA
CCCTCCTCCGCGTTCAGGCGTCTGCTCATGGGGAAACAGTCTGAGTCGCC
GATTTTCGTCCACACATCCACGACGGTGTCATCGAATACGGTGGGCGGAA
AGTCGTAGCCGATGCCCTCCACCTCGTAGAATTGCACATCGGTCTTGTTG
AGCTCAGCAGGGCGGGCAAGGATCGAGCCATAGGGATCCACGCCGACTAT
CTGGNCAC

BS06758.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1753-PA 1569 CG1753-RA 732..1569 854..17 4190 100 Minus
CG1753-PB 1569 CG1753-RB 732..1569 854..17 4190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-RC 1788 CG1753-RC 823..1661 854..16 4195 100 Minus
Cbs-RB 1990 CG1753-RB 1025..1863 854..16 4195 100 Minus
Cbs-RA 1911 CG1753-RA 946..1784 854..16 4195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21048065..21048598 854..321 2670 100 Minus
X 23542271 X 21048664..21048969 321..16 1530 100 Minus
Blast to na_te.dros performed on 2015-01-30 14:46:06 has no hits.

BS06758.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:12 Download gff for BS06758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1753-PB 728..1569 17..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:44 Download gff for BS06758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1753-PB 728..1569 17..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:06:16 Download gff for BS06758.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 942..1786 12..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:36:59 Download gff for BS06758.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 942..1786 12..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:36:59 Download gff for BS06758.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21048061..21048598 321..858 99 -> Minus
X 21048665..21048971 12..320 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:06:16 Download gff for BS06758.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20919088..20919625 321..858 99 -> Minus
arm_X 20919692..20919998 12..320 99   Minus

BS06758.5prime Sequence

799 bp (797 high quality bases) assembled on 2005-12-04

> BS06758.5prime
GAAGTTATCAGTCGACATGCCACAACCGAAGCCATACGAGAGGCCCGCGG
ACTTCATCGATCCCGGCAAGCCGTCCAAGTGCAAATGGCATCTGGGTACA
GCCGAGAAGTCGCCCCACATCCATCGGGGCATCGCCCACCGCCAGCAGAT
TACGCCCAACATCCTCGAGGTGATCGGATGCACGCCACTGGTCAAGTTGA
ACAACATTCCCGCCAGCGACGGCATCGAATGCGAGATGTATGCCAAGTGC
GAGTTCCTTAATCCGGGTGGATCAGTGAAGGACCGCATTGGGTACCGCAT
GGTGCAGGACGCCGAGGAGCAGGGCCTGCTCAAGCCAGGCTACACCATCA
TCGAACCAACGTCTGGAAACACGGGCATTGGACTGGCAATGGCCTGTGCC
GTTAAGGGATACAAGTGCATTATCGTGATGCCGGAGAAGATGTCCAACGA
GAAGGTGTCCGCGCTGCGAACCCTCGGGGCCAAGATCATACGTACTCCAA
CGGAGGCAGCCTACGATTCGCCGGAGGGACTGATCTACGTTGCTCAGCAG
CTGCAGCGGGAAACGCCCAACTCGATTGTCTTGGATCAGTATCGCAACGC
TGGCAATCCGCTGGCTCACTACGATGGCACTGCCGCCGAGATTCTGTGGC
AGCTGGACAACAAGGTCGATATGATAGTGGTCTCGGCGGGAACGGCGGGA
ACTATCAGTGGTATTGGGCGTAAGATCAAGGAGCAGGTTCCCAGTTGCCA
GATAGTCGGCGTGGATCCCTATGGCTCGATCCTTGCCCGCCCTGCTGAG

BS06758.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1753-PA 1569 CG1753-RA 1..783 17..799 3915 100 Plus
CG1753-PB 1569 CG1753-RB 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-RC 1788 CG1753-RC 92..874 17..799 3915 100 Plus
Cbs-RB 1990 CG1753-RB 294..1076 17..799 3915 100 Plus
Cbs-RA 1911 CG1753-RA 215..997 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21047557..21048116 240..799 2800 100 Plus
X 23542271 X 21047190..21047412 17..239 1115 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:39:04 has no hits.

BS06758.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:13 Download gff for BS06758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1753-PB 1..783 17..799 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:46 Download gff for BS06758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1753-PB 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:31:39 Download gff for BS06758.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 208..997 9..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:20:48 Download gff for BS06758.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 208..997 9..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:20:48 Download gff for BS06758.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21047180..21047412 8..239 98 -> Plus
X 21047557..21048116 240..799 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:31:39 Download gff for BS06758.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20918207..20918439 8..239 98 -> Plus
arm_X 20918584..20919143 240..799 100   Plus

BS06758.complete Sequence

1601 bp (1601 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635610

> BS06758.complete
GAAGTTATCAGTCGACATGCCACAACCGAAGCCATACGAGAGGCCCGCGG
ACTTCATCGATCCCGGCAAGCCGTCCAAGTGCAAATGGCATCTGGGTACA
GCCGAGAAGTCGCCCCACATCCATCGGGGCATCGCCCACCGCCAGCAGAT
TACGCCCAACATCCTCGAGGTGATCGGATGCACGCCACTGGTCAAGTTGA
ACAACATTCCCGCCAGCGACGGCATCGAATGCGAGATGTATGCCAAGTGC
GAGTTCCTTAATCCGGGTGGATCAGTGAAGGACCGCATTGGGTACCGCAT
GGTGCAGGACGCCGAGGAGCAGGGCCTGCTCAAGCCAGGCTACACCATCA
TCGAACCAACGTCTGGAAACACGGGCATTGGACTGGCAATGGCCTGTGCC
GTTAAGGGATACAAGTGCATTATCGTGATGCCGGAGAAGATGTCCAACGA
GAAGGTGTCCGCGCTGCGAACCCTCGGGGCCAAGATCATACGTACTCCAA
CGGAGGCAGCCTACGATTCGCCGGAGGGACTGATCTACGTTGCTCAGCAG
CTGCAGCGGGAAACGCCCAACTCGATTGTCTTGGATCAGTATCGCAACGC
TGGCAATCCGCTGGCTCACTACGATGGCACTGCCGCCGAGATTCTGTGGC
AGCTGGACAACAAGGTCGATATGATAGTGGTCTCGGCGGGAACGGCGGGA
ACTATCAGTGGTATTGGGCGTAAGATCAAGGAGCAGGTTCCCAGTTGCCA
GATAGTCGGCGTGGATCCCTATGGCTCGATCCTTGCCCGCCCTGCTGAGC
TCAACAAGACCGATGTGCAATTCTACGAGGTGGAGGGCATCGGCTACGAC
TTTCCGCCCACCGTATTCGATGACACCGTCGTGGATGTGTGGACGAAAAT
CGGCGACTCAGACTGTTTCCCCATGAGCAGACGCCTGAACGCGGAGGAGG
GTCTGTTGTGCGGCGGGTCCAGTGGCGGAGCGATGCACGCTGCCCTCGAG
CATGCCCGCAAATTGAAGAAAGGCCAGCGGTGCGTGGTCATTCTGCCCGA
TGGCATACGCAACTACATGACCAAGTTCGTGTCGGACAACTGGATGGAGG
CGCGCAACTTCAAGGAGCCGGTAAACGAGCACGGTCACTGGTGGTGGAGC
CTGGCCATCGCGGAGTTGGAGCTACCCGCTCCCCCGGTCATTCTCAAGTC
GGATGCAACTGTTGGTGAGGCTATTGCCCTGATGAAGAAACACCGCGTGG
ACCAGCTGCCCGTCGTGGATCAGGATGATGGTTCTGTCCTGGGCGTCGTG
GGTCAGGAGACGCTGATCACGCAGATCGTGAGCATGAACCGCCAGCAGTC
CGATCCCGCAATCAAGGCGCTCAACAAACGAGTAATCCGACTGAACGAAT
CCGAGATTCTGGGCAAGTTGGCCCGCGTCCTCGAAGTGGACCCCAGCGTG
CTCATCCTGGGCAAGAACCCGGCCGGCAAGGTGGAGCTCAAAGCTCTGGC
CACCAAGCTGGACGTGACCACTTTCATTGCCGCCGGCAAGCAGAAGCCCA
AGGCCAATGGCACCACCAACGGCGGCAGCCACTAAAAGCTTTCTAGACCA
T

BS06758.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-RC 1569 CG1753-PC 1..1569 17..1585 7845 100 Plus
Cbs-RB 1569 CG1753-PB 1..1569 17..1585 7845 100 Plus
Cbs-RA 1569 CG1753-PA 1..1569 17..1585 7845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-RC 1788 CG1753-RC 92..1661 17..1586 7850 100 Plus
Cbs-RB 1990 CG1753-RB 294..1863 17..1586 7850 100 Plus
Cbs-RA 1911 CG1753-RA 215..1784 17..1586 7850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21047557..21048598 240..1281 5210 100 Plus
X 23542271 X 21048664..21048969 1281..1586 1530 100 Plus
X 23542271 X 21047190..21047412 17..239 1115 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:07:52 has no hits.

BS06758.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:42 Download gff for BS06758.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RB 1..1569 17..1585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:30 Download gff for BS06758.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RB 285..1865 7..1590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:08 Download gff for BS06758.complete
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 215..1781 17..1583 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:42 Download gff for BS06758.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RB 285..1865 7..1590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:33 Download gff for BS06758.complete
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 215..1781 17..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:33 Download gff for BS06758.complete
Subject Subject Range Query Range Percent Splice Strand
X 21047190..21047412 17..239 100 -> Plus
X 21047557..21048598 240..1281 100 -> Plus
X 21048665..21048966 1282..1583 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:08 Download gff for BS06758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20918217..20918439 17..239 100 -> Plus
arm_X 20918584..20919625 240..1281 100 -> Plus
arm_X 20919692..20919993 1282..1583 100   Plus

BS06758.pep Sequence

Translation from 16 to 1584

> BS06758.pep
MPQPKPYERPADFIDPGKPSKCKWHLGTAEKSPHIHRGIAHRQQITPNIL
EVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE
EQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSAL
RTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLA
HYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVD
PYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDC
FPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKKGQRCVVILPDGIRNY
MTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVG
EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIK
ALNKRVIRLNESEILGKLARVLEVDPSVLILGKNPAGKVELKALATKLDV
TTFIAAGKQKPKANGTTNGGSH*

BS06758.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-PC 522 CG1753-PC 1..522 1..522 2734 100 Plus
Cbs-PB 522 CG1753-PB 1..522 1..522 2734 100 Plus
Cbs-PA 522 CG1753-PA 1..522 1..522 2734 100 Plus