Clone BS06759 Report

Search the DGRC for BS06759

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptalphaSnap-RA
Protein status:BS06759.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06759.3prime Sequence

908 bp (817 high quality bases) assembled on 2005-12-04

> BS06759.3prime
ATGGTCTAGAAAGCTTTTATCGCAGATCGGGATCCTCGTCCGCAGCCTTC
TTGATCCGCAGCAAGATGGTGGTGTACCACTGATCCAACCGGGAGATGCT
GTCGTAGTCCTTGACGGCCTCTGTGAATCCCTCGATGTTCTGTTCCTCTA
GATTCTCGCACAACACCTTGATGAGCTTGAACTCCCTGGAGTCCTGGAAT
GCTGGGTACTGCTGCGCATACTTTTCGATGGCATGCTGGGCGTTCAGGAG
GTCCACGCTGAGATGGCATAGAGCGGCCCTGAAGAAGTACTCCTTGGCAC
TGTACTTGAGCAGAGAGCTCTCCAGCGAGGAGGCGGCCACCTGCTCGTAT
ATGGATATTGCTTTCTCGTAATCCTCCAGTTGGGCGGCGTACTGGGCCAC
CTTCAACATGCACTTGTTGGCCGAACTGACCGACTCTTCACCCTTGAAGT
AATCAGCCGCCTGCTCATAGTGCTGAATAGACTTGGCCAGATTATTGGGA
TCACTTTCGTACATCTCGGCGATGCTTTGGTGATGTTTGGCAGCCATCGT
AAAGCGGCCCATATCCGTGTAGATGTCGATGGACTTCATCAGGCAGTTGA
CGGCGCTCTCCACGTCCACCTTCTTGTAGCAGTTGGAAGCGTCTACGTAG
CAGGTTCCGGCATCGTGACGACTTCCAGCCCGCGCGTGTAGAGTTGCCGC
CTCGCAGAAGCACTCCCCAGCCTTTGTCCAGTTTTTGGACATCTTAAACA
TGTTGCCCGCCCGCTGGTAGCACTCGATGGCGTCCTCCACCTTGTTGGAC
CCTCCGAACAGCGATCCCAGAAAGCCCTTCTGCTGGGTCAACTTCTTCTC
CGCCTCGGCCATCAGCTGGAGCGCCTTCTGTTCGTTGTCACCATGTCGAC
TGATAACT

BS06759.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6625-PA 879 Snap-RA 4..879 892..17 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
alphaSnap-RA 2070 CG6625-RA 157..1041 899..16 4400 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20314982..20315306 488..164 1625 100 Minus
3L 28110227 3L 20314607..20314924 804..487 1590 100 Minus
3L 28110227 3L 20315396..20315548 168..16 765 100 Minus
3L 28110227 3L 20313796..20313884 892..804 445 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:56:37 has no hits.

BS06759.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:14 Download gff for BS06759.3prime
Subject Subject Range Query Range Percent Splice Strand
Snap-PA 1..879 17..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:48 Download gff for BS06759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6625-PA 1..879 17..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:50 Download gff for BS06759.3prime
Subject Subject Range Query Range Percent Splice Strand
Snap-RA 153..1048 9..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:03 Download gff for BS06759.3prime
Subject Subject Range Query Range Percent Splice Strand
alphaSnap-RA 153..1048 9..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:03 Download gff for BS06759.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20315398..20315555 9..166 97   Minus
3L 20313784..20313884 804..904 97 -> Minus
3L 20314608..20314923 488..803 100 -> Minus
3L 20314983..20315303 167..487 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:50 Download gff for BS06759.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20306884..20306984 804..904 97 -> Minus
arm_3L 20307708..20308023 488..803 100 -> Minus
arm_3L 20308083..20308403 167..487 100 -> Minus
arm_3L 20308498..20308655 9..166 97   Minus

BS06759.5prime Sequence

859 bp (857 high quality bases) assembled on 2005-12-04

> BS06759.5prime
GAAGTTATCAGTCGACATGGGTGACAACGAACAGAAGGCGCTCCAGCTGA
TGGCCGAGGCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCG
CTGTTCGGAGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCG
GGCGGGCAACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGT
GCTTCTGCGAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGAT
GCCGGAACCTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGT
GGAGAGCGCCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATA
TGGGCCGCTTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATG
TACGAAAGTGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCA
GGCGGCTGATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAACAAGT
GCATGTTGAAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAA
GCAATATCCATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCT
GCTCAAGTACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATC
TCAGCGTGGACCTCCTGAACGCCCAGCATGCCATCGAAAAGTATGCGCAG
CAGTACCCAGCATTCCAGGACTCCAGGGAGTTCAAGCTCATCAAGGTGTT
GTGCGAGAATCTAGAGGAACAGAACATCGAGGGATTCACAGAGGCCGTCA
AGGACTACGACAGCATCTCCCGGTTGGATCAGTGGTACACCACCATCTTG
CTGCGGATC

BS06759.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6625-PA 879 Snap-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
alphaSnap-RA 2070 CG6625-RA 157..1004 12..859 4240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20314982..20315306 424..748 1625 100 Plus
3L 28110227 3L 20314607..20314924 108..425 1590 100 Plus
3L 28110227 3L 20315396..20315511 744..859 580 100 Plus
3L 28110227 3L 20313788..20313884 12..108 485 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:17:46 has no hits.

BS06759.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:15 Download gff for BS06759.5prime
Subject Subject Range Query Range Percent Splice Strand
Snap-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:49 Download gff for BS06759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6625-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:00 Download gff for BS06759.5prime
Subject Subject Range Query Range Percent Splice Strand
Snap-RA 153..1004 7..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:00:44 Download gff for BS06759.5prime
Subject Subject Range Query Range Percent Splice Strand
alphaSnap-RA 153..1004 7..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:00:44 Download gff for BS06759.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20313784..20313884 7..108 98 -> Plus
3L 20314608..20314923 109..424 100 -> Plus
3L 20314983..20315303 425..745 100 -> Plus
3L 20315398..20315511 746..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:00 Download gff for BS06759.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20306884..20306984 7..108 98 -> Plus
arm_3L 20307708..20308023 109..424 100 -> Plus
arm_3L 20308083..20308403 425..745 100 -> Plus
arm_3L 20308498..20308611 746..859 100   Plus

BS06759.complete Sequence

911 bp (911 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635611

> BS06759.complete
GAAGTTATCAGTCGACATGGGTGACAACGAACAGAAGGCGCTCCAGCTGA
TGGCCGAGGCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCG
CTGTTCGGAGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCG
GGCGGGCAACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGT
GCTTCTGCGAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGAT
GCCGGAACCTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGT
GGAGAGCGCCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATA
TGGGCCGCTTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATG
TACGAAAGTGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCA
GGCGGCTGATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAACAAGT
GCATGTTGAAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAA
GCAATATCCATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCT
GCTCAAGTACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATC
TCAGCGTGGACCTCCTGAACGCCCAGCATGCCATCGAAAAGTATGCGCAG
CAGTACCCAGCATTCCAGGACTCCAGGGAGTTCAAGCTCATCAAGGTGTT
GTGCGAGAATCTAGAGGAACAGAACATCGAGGGATTCACAGAGGCCGTCA
AGGACTACGACAGCATCTCCCGGTTGGATCAGTGGTACACCACCATCTTG
CTGCGGATCAAGAAGGCTGCGGACGAGGATCCCGATCTGCGATAAAAGCT
TTCTAGACCAT

BS06759.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
alphaSnap-RA 879 CG6625-PA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
alphaSnap-RA 2070 CG6625-RA 157..1041 12..896 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20314982..20315306 424..748 1625 100 Plus
3L 28110227 3L 20314607..20314924 108..425 1590 100 Plus
3L 28110227 3L 20315396..20315548 744..896 765 100 Plus
3L 28110227 3L 20313788..20313884 12..108 485 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:10:20 has no hits.

BS06759.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:09 Download gff for BS06759.complete
Subject Subject Range Query Range Percent Splice Strand
Snap-RA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:54 Download gff for BS06759.complete
Subject Subject Range Query Range Percent Splice Strand
Snap-RA 151..1046 7..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:12 Download gff for BS06759.complete
Subject Subject Range Query Range Percent Splice Strand
Snap-RA 162..1038 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:09 Download gff for BS06759.complete
Subject Subject Range Query Range Percent Splice Strand
Snap-RA 151..1046 7..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:16 Download gff for BS06759.complete
Subject Subject Range Query Range Percent Splice Strand
alphaSnap-RA 162..1038 17..893 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:16 Download gff for BS06759.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20314983..20315303 425..745 100 -> Plus
3L 20315398..20315545 746..893 100   Plus
3L 20313793..20313884 17..108 100 -> Plus
3L 20314608..20314923 109..424 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:12 Download gff for BS06759.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20306893..20306984 17..108 100 -> Plus
arm_3L 20307708..20308023 109..424 100 -> Plus
arm_3L 20308083..20308403 425..745 100 -> Plus
arm_3L 20308498..20308645 746..893 100   Plus

BS06759.pep Sequence

Translation from 16 to 894

> BS06759.pep
MGDNEQKALQLMAEAEKKLTQQKGFLGSLFGGSNKVEDAIECYQRAGNMF
KMSKNWTKAGECFCEAATLHARAGSRHDAGTCYVDASNCYKKVDVESAVN
CLMKSIDIYTDMGRFTMAAKHHQSIAEMYESDPNNLAKSIQHYEQAADYF
KGEESVSSANKCMLKVAQYAAQLEDYEKAISIYEQVAASSLESSLLKYSA
KEYFFRAALCHLSVDLLNAQHAIEKYAQQYPAFQDSREFKLIKVLCENLE
EQNIEGFTEAVKDYDSISRLDQWYTTILLRIKKAADEDPDLR*

BS06759.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
alphaSnap-PA 292 CG6625-PA 1..292 1..292 1513 100 Plus