Clone Sequence Records
BS06759.3prime Sequence
908 bp (817 high quality bases) assembled on 2005-12-04
> BS06759.3prime
ATGGTCTAGAAAGCTTTTATCGCAGATCGGGATCCTCGTCCGCAGCCTTC
TTGATCCGCAGCAAGATGGTGGTGTACCACTGATCCAACCGGGAGATGCT
GTCGTAGTCCTTGACGGCCTCTGTGAATCCCTCGATGTTCTGTTCCTCTA
GATTCTCGCACAACACCTTGATGAGCTTGAACTCCCTGGAGTCCTGGAAT
GCTGGGTACTGCTGCGCATACTTTTCGATGGCATGCTGGGCGTTCAGGAG
GTCCACGCTGAGATGGCATAGAGCGGCCCTGAAGAAGTACTCCTTGGCAC
TGTACTTGAGCAGAGAGCTCTCCAGCGAGGAGGCGGCCACCTGCTCGTAT
ATGGATATTGCTTTCTCGTAATCCTCCAGTTGGGCGGCGTACTGGGCCAC
CTTCAACATGCACTTGTTGGCCGAACTGACCGACTCTTCACCCTTGAAGT
AATCAGCCGCCTGCTCATAGTGCTGAATAGACTTGGCCAGATTATTGGGA
TCACTTTCGTACATCTCGGCGATGCTTTGGTGATGTTTGGCAGCCATCGT
AAAGCGGCCCATATCCGTGTAGATGTCGATGGACTTCATCAGGCAGTTGA
CGGCGCTCTCCACGTCCACCTTCTTGTAGCAGTTGGAAGCGTCTACGTAG
CAGGTTCCGGCATCGTGACGACTTCCAGCCCGCGCGTGTAGAGTTGCCGC
CTCGCAGAAGCACTCCCCAGCCTTTGTCCAGTTTTTGGACATCTTAAACA
TGTTGCCCGCCCGCTGGTAGCACTCGATGGCGTCCTCCACCTTGTTGGAC
CCTCCGAACAGCGATCCCAGAAAGCCCTTCTGCTGGGTCAACTTCTTCTC
CGCCTCGGCCATCAGCTGGAGCGCCTTCTGTTCGTTGTCACCATGTCGAC
TGATAACT
BS06759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6625-PA | 879 | Snap-RA | 4..879 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-RA | 2070 | CG6625-RA | 157..1041 | 899..16 | 4400 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20314982..20315306 | 488..164 | 1625 | 100 | Minus |
3L | 28110227 | 3L | 20314607..20314924 | 804..487 | 1590 | 100 | Minus |
3L | 28110227 | 3L | 20315396..20315548 | 168..16 | 765 | 100 | Minus |
3L | 28110227 | 3L | 20313796..20313884 | 892..804 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:56:37 has no hits.
BS06759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:14 Download gff for
BS06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-PA | 1..879 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:48 Download gff for
BS06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6625-PA | 1..879 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:50 Download gff for
BS06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 153..1048 | 9..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:03 Download gff for
BS06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaSnap-RA | 153..1048 | 9..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:03 Download gff for
BS06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20315398..20315555 | 9..166 | 97 | | Minus |
3L | 20313784..20313884 | 804..904 | 97 | -> | Minus |
3L | 20314608..20314923 | 488..803 | 100 | -> | Minus |
3L | 20314983..20315303 | 167..487 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:50 Download gff for
BS06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20306884..20306984 | 804..904 | 97 | -> | Minus |
arm_3L | 20307708..20308023 | 488..803 | 100 | -> | Minus |
arm_3L | 20308083..20308403 | 167..487 | 100 | -> | Minus |
arm_3L | 20308498..20308655 | 9..166 | 97 | | Minus |
BS06759.5prime Sequence
859 bp (857 high quality bases) assembled on 2005-12-04
> BS06759.5prime
GAAGTTATCAGTCGACATGGGTGACAACGAACAGAAGGCGCTCCAGCTGA
TGGCCGAGGCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCG
CTGTTCGGAGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCG
GGCGGGCAACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGT
GCTTCTGCGAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGAT
GCCGGAACCTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGT
GGAGAGCGCCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATA
TGGGCCGCTTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATG
TACGAAAGTGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCA
GGCGGCTGATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAACAAGT
GCATGTTGAAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAA
GCAATATCCATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCT
GCTCAAGTACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATC
TCAGCGTGGACCTCCTGAACGCCCAGCATGCCATCGAAAAGTATGCGCAG
CAGTACCCAGCATTCCAGGACTCCAGGGAGTTCAAGCTCATCAAGGTGTT
GTGCGAGAATCTAGAGGAACAGAACATCGAGGGATTCACAGAGGCCGTCA
AGGACTACGACAGCATCTCCCGGTTGGATCAGTGGTACACCACCATCTTG
CTGCGGATC
BS06759.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6625-PA | 879 | Snap-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-RA | 2070 | CG6625-RA | 157..1004 | 12..859 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20314982..20315306 | 424..748 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 20314607..20314924 | 108..425 | 1590 | 100 | Plus |
3L | 28110227 | 3L | 20315396..20315511 | 744..859 | 580 | 100 | Plus |
3L | 28110227 | 3L | 20313788..20313884 | 12..108 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:17:46 has no hits.
BS06759.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:15 Download gff for
BS06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:49 Download gff for
BS06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6625-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:00 Download gff for
BS06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 153..1004 | 7..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:00:44 Download gff for
BS06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaSnap-RA | 153..1004 | 7..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:00:44 Download gff for
BS06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20313784..20313884 | 7..108 | 98 | -> | Plus |
3L | 20314608..20314923 | 109..424 | 100 | -> | Plus |
3L | 20314983..20315303 | 425..745 | 100 | -> | Plus |
3L | 20315398..20315511 | 746..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:00 Download gff for
BS06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20306884..20306984 | 7..108 | 98 | -> | Plus |
arm_3L | 20307708..20308023 | 109..424 | 100 | -> | Plus |
arm_3L | 20308083..20308403 | 425..745 | 100 | -> | Plus |
arm_3L | 20308498..20308611 | 746..859 | 100 | | Plus |
BS06759.complete Sequence
911 bp (911 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635611
> BS06759.complete
GAAGTTATCAGTCGACATGGGTGACAACGAACAGAAGGCGCTCCAGCTGA
TGGCCGAGGCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCG
CTGTTCGGAGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCG
GGCGGGCAACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGT
GCTTCTGCGAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGAT
GCCGGAACCTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGT
GGAGAGCGCCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATA
TGGGCCGCTTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATG
TACGAAAGTGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCA
GGCGGCTGATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAACAAGT
GCATGTTGAAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAA
GCAATATCCATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCT
GCTCAAGTACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATC
TCAGCGTGGACCTCCTGAACGCCCAGCATGCCATCGAAAAGTATGCGCAG
CAGTACCCAGCATTCCAGGACTCCAGGGAGTTCAAGCTCATCAAGGTGTT
GTGCGAGAATCTAGAGGAACAGAACATCGAGGGATTCACAGAGGCCGTCA
AGGACTACGACAGCATCTCCCGGTTGGATCAGTGGTACACCACCATCTTG
CTGCGGATCAAGAAGGCTGCGGACGAGGATCCCGATCTGCGATAAAAGCT
TTCTAGACCAT
BS06759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-RA | 879 | CG6625-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-RA | 2070 | CG6625-RA | 157..1041 | 12..896 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20314982..20315306 | 424..748 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 20314607..20314924 | 108..425 | 1590 | 100 | Plus |
3L | 28110227 | 3L | 20315396..20315548 | 744..896 | 765 | 100 | Plus |
3L | 28110227 | 3L | 20313788..20313884 | 12..108 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:10:20 has no hits.
BS06759.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:09 Download gff for
BS06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:54 Download gff for
BS06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 151..1046 | 7..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:12 Download gff for
BS06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 162..1038 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:09 Download gff for
BS06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 151..1046 | 7..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:16 Download gff for
BS06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaSnap-RA | 162..1038 | 17..893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:16 Download gff for
BS06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20314983..20315303 | 425..745 | 100 | -> | Plus |
3L | 20315398..20315545 | 746..893 | 100 | | Plus |
3L | 20313793..20313884 | 17..108 | 100 | -> | Plus |
3L | 20314608..20314923 | 109..424 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:12 Download gff for
BS06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20306893..20306984 | 17..108 | 100 | -> | Plus |
arm_3L | 20307708..20308023 | 109..424 | 100 | -> | Plus |
arm_3L | 20308083..20308403 | 425..745 | 100 | -> | Plus |
arm_3L | 20308498..20308645 | 746..893 | 100 | | Plus |
BS06759.pep Sequence
Translation from 16 to 894
> BS06759.pep
MGDNEQKALQLMAEAEKKLTQQKGFLGSLFGGSNKVEDAIECYQRAGNMF
KMSKNWTKAGECFCEAATLHARAGSRHDAGTCYVDASNCYKKVDVESAVN
CLMKSIDIYTDMGRFTMAAKHHQSIAEMYESDPNNLAKSIQHYEQAADYF
KGEESVSSANKCMLKVAQYAAQLEDYEKAISIYEQVAASSLESSLLKYSA
KEYFFRAALCHLSVDLLNAQHAIEKYAQQYPAFQDSREFKLIKVLCENLE
EQNIEGFTEAVKDYDSISRLDQWYTTILLRIKKAADEDPDLR*
BS06759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-PA | 292 | CG6625-PA | 1..292 | 1..292 | 1513 | 100 | Plus |