Clone Sequence Records
BS06764.3prime Sequence
955 bp (785 high quality bases) assembled on 2005-12-04
> BS06764.3prime
ATGGTCTAGAAAGCTTCTAGTAGCGCTGCTGCGATGGACGCCCACCGGCG
TTGTAGTATCCACTGGCTCCTGGAGGCAAGCTAGGCGGCATTGGTGGTGG
TGGTGCAGCGCTCCCGCTATAGTGTCCGACCACTGTCTGCTGGACTCCCC
ATCCGGAAGAGGGGTACGGCGGCATAGGCACTACCGGCGGGGGCGGCGGT
GGAGGAGCATGATAAATGTGGTACCCGGATGGCTGACCTGGTGGTGTTGG
GCCCTGTAACAGGTTCTGGGAGTCGCTAGGACCAATGATTGGCACGCCAC
TGGCTAGGGATTTAATGCTCTGAATGTTGCTAACTTCCAGCACGCCACCG
TTGCCACATACGGGGGGCGGCGGCTGTTGTGGAACGGAAAGTGGTCCAAT
ACCCGTAGAATTGGTAAGCTTGCCGGATTTTGGACTGTCGGCTCTGCTTG
GTGGCTTTTGGGGCGGACTGGTTGGCTGGAGCGCTTCTTTTTGGGTTGAT
TGGTACAGGTCCAGAACTTGGTGGCAGATGTCTTCGAGTATTTCCATCGT
TACATCAGACACAAACATATCCCACCAACGCTGCTGCTGTGGCTGGCGGC
CCTCCCAGTCTTGCACAGTGAATTTGCTTAGCTTGCTGGCCAAATGGATA
AGAGCCACGGCGATAATCTCCGGCTCCCACTGTAGACAAACTACTGTGCT
GAGAGAGTCGTTGACGAAGTTCCACGCCATTTGCACCATCTTTTGCAGCT
TCTGCTGGTCGCCTTTGAAACACTTAGCGTACTTTAGGAGAAAGGTGTAA
GGATGCTCTACTTGCAAATCGAATTTGATGGTCTGCAGCAGAATACGCTC
TAGCGTCATCACCTCCTCCTTAGGGTCGTCGCCAAACGAGTAGAAGTAAT
TGTCGGTAAGGATGCCACGCGCAGTTTTAATAATGTCGCGACACTTCTTT
GGCGT
BS06764.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15218-PA | 1203 | CycK-RA | 265..1203 | 955..17 | 4695 | 100 | Minus |
CG15218-PB | 1203 | CycK-RB | 265..1203 | 955..17 | 4695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycK-RC | 5858 | CG15218-RC | 684..1622 | 955..17 | 4695 | 100 | Minus |
CycK-RB | 1679 | CG15218-RB | 484..1422 | 955..17 | 4695 | 100 | Minus |
CycK-RA | 1879 | CG15218-RA | 684..1622 | 955..17 | 4695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22128521..22129459 | 17..955 | 4695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:30:07 has no hits.
BS06764.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:22 Download gff for
BS06764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-PA | 265..1203 | 17..955 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:33:59 Download gff for
BS06764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15218-PB | 265..1203 | 17..955 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:44:13 Download gff for
BS06764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-RA | 684..1625 | 14..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:52:23 Download gff for
BS06764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-RA | 684..1625 | 14..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:52:23 Download gff for
BS06764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22128518..22129459 | 14..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:44:13 Download gff for
BS06764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22128518..22129459 | 14..955 | 99 | | Plus |
BS06764.5prime Sequence
972 bp (801 high quality bases) assembled on 2005-12-04
> BS06764.5prime
GAAGTTATCAGTCGACATGCCGTGCTGGTATTACGACAAAAAGGAGCTGC
GGGAGACGCCCTCGATCTTGGATGGAATAAGCTTCGAAACGGAGCGGCGG
TACAGAAAAGAAGGTGCTCGATTTATTATGGAATGTGGCACCAAAATGGG
CTTGGGCCACAACACGATGGCCACCGGCGTTGTATATTTTCACCGATTTT
ACATGTTTCATTCGTTCCGGAGTTTCCCCCGGTACGTGACTGCGTGCTGC
TGCCTGTTCTTTGCTGGCAAGGTGGAGGAGACGCCAAAGAAGTGTCGCGA
CATTATTAAAACTGCGCGTGGCATCCTTACCGACAATTACTTCTACTCGT
TTGGCGACGACCCTAAGGAGGAGGTGATGACGCTAGAGCGTATTCTGCTG
CAGACCATCAAATTCGATTTGCAAGTAGAGCATCCTTACACCTTTCTCCT
AAAGTACGCTAAGTGTTTCAAAGGCGACCAGCAGAAGCTGCAAAAGATGG
TGCAAATGGCGTGGAACTTCGTCAACGACTCTCTCAGCACAGTAGTTTGT
CTACAGTGGGAGCCGGAGATTATCGCCGTGGCTCTTATCCATTTGGCCAG
CAAGCTAAGCAAATTCACTGTGCAAGACTGGGAGGGCCGCCAGCCACAGC
AGCAGCGTTGGTGGGATATGTTTGTGTCTGATGTAACGATGGAAATACTC
GAAGACATCTGCCACCAAGTTCTGGACCTGTACCAATCAACCCAAAAAGA
AGCGCTCCAGCCAACCAGTCCGCCCCAAAAGCCACCAAGCAGAGCCGACA
GTCCAAAATCCGGCAAGCTTACCAATTCTACGGGTATTGGACCACTTTTC
GTTCCCACACAGCCGCCGCCCCCCGTATGTGGCAACGGTGGCGTGCTGGA
AGTTAGCAACATTCAGAGCATTAAATCCCTAGCCAGTGGCGTGCCAATCA
TTGGTCCTAGCGACTCCCAGAA
BS06764.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15218-PA | 1203 | CycK-RA | 1..839 | 17..855 | 4170 | 99.8 | Plus |
CG15218-PB | 1203 | CycK-RB | 1..839 | 17..855 | 4170 | 99.8 | Plus |
CG15218-PA | 1203 | CycK-RA | 843..956 | 859..972 | 570 | 100 | Plus |
CG15218-PB | 1203 | CycK-RB | 843..956 | 859..972 | 570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycK-RC | 5858 | CG15218-RC | 420..1375 | 17..972 | 4720 | 99.7 | Plus |
CycK-RB | 1679 | CG15218-RB | 220..1175 | 17..972 | 4720 | 99.7 | Plus |
CycK-RA | 1879 | CG15218-RA | 420..1375 | 17..972 | 4720 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22128768..22129723 | 972..17 | 4720 | 99.6 | Minus |
2L | 23513712 | 2L | 22131022..22131126 | 263..159 | 345 | 88.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:46:16 has no hits.
BS06764.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:23 Download gff for
BS06764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-PA | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:01 Download gff for
BS06764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15218-PB | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:03:03 Download gff for
BS06764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-RA | 416..1375 | 13..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:18:11 Download gff for
BS06764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-RA | 416..1375 | 13..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:18:11 Download gff for
BS06764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22128768..22129725 | 13..972 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:03:03 Download gff for
BS06764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22128768..22129725 | 13..972 | 99 | | Minus |
BS06764.complete Sequence
1235 bp (1235 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635612
> BS06764.complete
GAAGTTATCAGTCGACATGCCGTGCTGGTATTACGACAAAAAGGAGCTGC
GGGAGACGCCCTCGATCTTGGATGGAATAAGCTTCGAAACGGAGCGGCGG
TACAGAAAAGAAGGTGCTCGATTTATTATGGAATGTGGCACCAAAATGGG
CTTGGGCCACAACACGATGGCCACCGGCGTTGTATATTTTCACCGATTTT
ACATGTTTCATTCGTTCCGGAGTTTCCCCCGGTACGTGACTGCGTGCTGC
TGCCTGTTCTTTGCTGGCAAGGTGGAGGAGACGCCAAAGAAGTGTCGCGA
CATTATTAAAACTGCGCGTGGCATCCTTACCGACAATTACTTCTACTCGT
TTGGCGACGACCCTAAGGAGGAGGTGATGACGCTAGAGCGTATTCTGCTG
CAGACCATCAAATTCGATTTGCAAGTAGAGCATCCTTACACCTTTCTCCT
AAAGTACGCTAAGTGTTTCAAAGGCGACCAGCAGAAGCTGCAAAAGATGG
TGCAAATGGCGTGGAACTTCGTCAACGACTCTCTCAGCACAGTAGTTTGT
CTACAGTGGGAGCCGGAGATTATCGCCGTGGCTCTTATCCATTTGGCCAG
CAAGCTAAGCAAATTCACTGTGCAAGACTGGGAGGGCCGCCAGCCACAGC
AGCAGCGTTGGTGGGATATGTTTGTGTCTGATGTAACGATGGAAATACTC
GAAGACATCTGCCACCAAGTTCTGGACCTGTACCAATCAACCCAAAAAGA
AGCGCTCCAGCCAACCAGTCCGCCCCAAAAGCCACCAAGCAGAGCCGACA
GTCCAAAATCCGGCAAGCTTACCAATTCTACGGGTATTGGACCACTTTCC
GTTCCACAACAGCCGCCGCCCCCCGTATGTGGCAACGGTGGCGTGCTGGA
AGTTAGCAACATTCAGAGCATTAAATCCCTAGCCAGTGGCGTGCCAATCA
TTGGTCCTAGCGACTCCCAGAACCTGTTACAGGGCCCAACACCACCAGGT
CAGCCATCCGGGTACCACATTTATCATGCTCCTCCACCGCCGCCCCCGCC
GGTAGTGCCTATGCCGCCGTACCCCTCTTCCGGATGGGGAGTCCAGCAGA
CAGTGGTCGGACACTATAGCGGGAGCGCTGCACCACCACCACCAATGCCG
CCTAGCTTGCCTCCAGGAGCCAGTGGATACTACAACGCCGGTGGGCGTCC
ATCGCAGCAGCGCTACTAGAAGCTTTCTAGACCAT
BS06764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycK-RC | 1203 | CG15218-PC | 1..1203 | 17..1219 | 6015 | 100 | Plus |
CycK-RB | 1203 | CG15218-PB | 1..1203 | 17..1219 | 6015 | 100 | Plus |
CycK-RA | 1203 | CG15218-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycK-RC | 5858 | CG15218-RC | 420..1622 | 17..1219 | 6015 | 100 | Plus |
CycK-RB | 1679 | CG15218-RB | 220..1422 | 17..1219 | 6015 | 100 | Plus |
CycK-RA | 1879 | CG15218-RA | 420..1622 | 17..1219 | 6015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22128521..22129723 | 1219..17 | 6015 | 100 | Minus |
2L | 23513712 | 2L | 22131022..22131126 | 263..159 | 345 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:58:49 has no hits.
BS06764.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:43 Download gff for
BS06764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-RB | 1..1203 | 17..1219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:32 Download gff for
BS06764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-RB | 189..1398 | 13..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:11 Download gff for
BS06764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-RA | 420..1622 | 17..1219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:43 Download gff for
BS06764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-RB | 189..1398 | 13..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:43 Download gff for
BS06764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycK-RA | 420..1622 | 17..1219 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:43 Download gff for
BS06764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22128521..22129723 | 17..1219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:11 Download gff for
BS06764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22128521..22129723 | 17..1219 | 100 | | Minus |
BS06764.pep Sequence
Translation from 16 to 1218
> BS06764.pep
MPCWYYDKKELRETPSILDGISFETERRYRKEGARFIMECGTKMGLGHNT
MATGVVYFHRFYMFHSFRSFPRYVTACCCLFFAGKVEETPKKCRDIIKTA
RGILTDNYFYSFGDDPKEEVMTLERILLQTIKFDLQVEHPYTFLLKYAKC
FKGDQQKLQKMVQMAWNFVNDSLSTVVCLQWEPEIIAVALIHLASKLSKF
TVQDWEGRQPQQQRWWDMFVSDVTMEILEDICHQVLDLYQSTQKEALQPT
SPPQKPPSRADSPKSGKLTNSTGIGPLSVPQQPPPPVCGNGGVLEVSNIQ
SIKSLASGVPIIGPSDSQNLLQGPTPPGQPSGYHIYHAPPPPPPPVVPMP
PYPSSGWGVQQTVVGHYSGSAAPPPPMPPSLPPGASGYYNAGGRPSQQRY
*
BS06764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycK-PC | 400 | CG15218-PC | 1..400 | 1..400 | 2188 | 100 | Plus |
CycK-PB | 400 | CG15218-PB | 1..400 | 1..400 | 2188 | 100 | Plus |
CycK-PA | 400 | CG15218-PA | 1..400 | 1..400 | 2188 | 100 | Plus |
CycT-PC | 1097 | CG6292-PC | 45..275 | 4..242 | 323 | 31.2 | Plus |
CycT-PB | 1097 | CG6292-PB | 45..275 | 4..242 | 323 | 31.2 | Plus |