Clone Sequence Records
BS06769.3prime Sequence
939 bp (759 high quality bases) assembled on 2005-12-04
> BS06769.3prime
ATGGTCTAGAAAGCTTTTAAAAGGCTACGTCGTGTAGTTCAGGAGTCGTG
GGCATTACTTGTACTGATTCGACGCCATTCCATTCGCTGACCACCGTATT
GTGGCTGTGCTGGTGGGGATTGGGGTGATCTTCGACAGAGCCTTCGTAGA
TCTGCAGATCGGTGGCCAGCTTGTCGTGCTCCGTTATTTCGTCAAAGTCA
AAGATCTCGGTTACTTTCACCTTGTTCGTGTTGCTGTCAGTATAGTAATA
GGCATATAGAGCGTCGTTGTGCGTGGTCATCTTGAGGACATGCTCAAAGT
TGTCGACATCGTCCTCTAGCGGTGTGGCTCCACATTCATCCACAAGGATT
GAAACACGGGGTCCATATAAGCGGCTGGAATGAAGAAGTCCTGTGGCATC
GAAGTGAGGCTGGTCATAGAGCGTGAATTTATTTAGCAGTCGTATCCGCA
TGGCGTGGTTCAACTGCAAAATTAAGTCCTCCACCATTACTCTGGCCTGC
TTGGTAAGTTTGGGCGTCAGTGCTGATATTTTTGAAATGGTGGCCAGCAG
AAAGTCCATGGGCACTGTGGCTGGTAGGGAAAGCAGCTTAATGCCGCGAT
GCTTGAAAATCCAGTTGGCCAGACCCTTATTGGCTTGTTCGATATAGTCC
TGAATGACATCCAGTACCGTTTGGGGCATGTTTGAGCTCAAAGCGTCCTT
TCTGTGCTTCTTGCACTCCCTGCACTCGGGATCGAACTCCTGGGGCTGGG
CCACCGTTTCGGAAACCACGAATGTCGACTGAACCGCCACGCAGCGTCGA
CAGTTGATCAGATTGTTGCGATGCAGGAATTGCAGGGCATCATCGAATCC
CTGCTGGCAGAACTTGGACAGAAACTCGGGACGCGGCGGAAAAAGGATGC
GCACGAAGCGATTGATGTTCTGTCTGGAGATCTCGATGC
BS06769.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5295-PA | 1524 | CG5295-RA | 602..1524 | 939..17 | 4615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bmm-RA | 2437 | CG5295-RA | 936..1859 | 939..16 | 4620 | 100 | Minus |
bmm-RB | 2301 | CG5295-RB | 936..1811 | 939..64 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14777339..14777608 | 64..333 | 1350 | 100 | Plus |
3L | 28110227 | 3L | 14778339..14778581 | 697..939 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 14778111..14778279 | 531..699 | 845 | 100 | Plus |
3L | 28110227 | 3L | 14777933..14778041 | 422..530 | 545 | 100 | Plus |
3L | 28110227 | 3L | 14777678..14777767 | 333..422 | 450 | 100 | Plus |
3L | 28110227 | 3L | 14777194..14777244 | 16..66 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 01:18:41 has no hits.
BS06769.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:33 Download gff for
BS06769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5295-PA | 602..1524 | 17..939 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:13 Download gff for
BS06769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5295-PA | 602..1524 | 17..939 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:53:28 Download gff for
BS06769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bmm-RA | 936..1866 | 7..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:48 Download gff for
BS06769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bmm-RA | 936..1866 | 7..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:48 Download gff for
BS06769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14777187..14777241 | 7..63 | 92 | <- | Plus |
3L | 14777339..14777607 | 64..332 | 100 | <- | Plus |
3L | 14777678..14777766 | 333..421 | 100 | <- | Plus |
3L | 14777933..14778041 | 422..530 | 100 | <- | Plus |
3L | 14778111..14778277 | 531..697 | 100 | <- | Plus |
3L | 14778340..14778581 | 698..939 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:53:28 Download gff for
BS06769.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14770287..14770341 | 7..63 | 92 | <- | Plus |
arm_3L | 14770439..14770707 | 64..332 | 100 | <- | Plus |
arm_3L | 14770778..14770866 | 333..421 | 100 | <- | Plus |
arm_3L | 14771033..14771141 | 422..530 | 100 | <- | Plus |
arm_3L | 14771211..14771377 | 531..697 | 100 | <- | Plus |
arm_3L | 14771440..14771681 | 698..939 | 100 | | Plus |
BS06769.5prime Sequence
871 bp (832 high quality bases) assembled on 2005-12-04
> BS06769.5prime
GAAGTTATCAGTCGACATGAATCTATCATTCGCTGGCTGCGGATTCCTGG
GCATCTACCACGTCGGAGTGGCCGTCTGCTTCAAGAAGTATGCACCGCAT
CTGTTGCTGGAGAAGATCGGAGGCGCTTCGGCCGGTTCCCTGGCCGCCTG
CTGTCTCCTCTGCGATTTGCCATTGGGCAGCATGACTTCGGACTTCTTCA
GGGTGGTGAACGAAGCTCGTCGCTACTCCCTGGGTCCCTTCAGTCCCTCC
TTCAACATCCAGACCTGTCTGCTGGAGGGTCTACAGAAGCATCTACCAGA
CGATGCTCACAAGCGGGTGAATGGACGACTGCACATTTCGCTTACCCGCG
TGTACGATGGCAAGAACGTGATCATCTCGGAGTTTGAGTCACGGGAAGAG
GTCCTGCAGGCGCTGTTGTGTGCGTGCTTCATACCCGGATTCTCCGGCAT
CTTGCCGCCCAGATTCCGTGGCGTTCGCTACATGGATGGTGCCTTCTCGG
ACAATCTGCCCATTCTGGACGAGAACACCATTACGGTCAGTCCGTTCTGC
GGCGAGAGTGATATTTGCCCGAGGGATCAGAGCTCGCAGCTCTTCCATCT
GAATTGGGCCAACACCAGCATCGAGATCTCCAGACAGAACATCAATCGCT
TCGTGCGCATCCTTTTTCCGCCGCGTCCCGAGTTTCTGTCCAAGTTCTGC
CAGCAGGGATTCGATGATGCCCTGCAATTCCTGCATCGCAACAATCTGAT
CAACTGTCGACGCTGCGTGGCGGTTCAGTCGACATTCGTGGTTTCCGAAA
CGGTGGCCCAGCCCCAGGAGTTCGATCCCGAGTGCAGGGAGTGCAAGAAG
CACAGAAAGGACGCTTTGAGC
BS06769.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5295-PA | 1524 | CG5295-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bmm-RB | 2301 | CG5295-RB | 334..1189 | 16..871 | 4280 | 100 | Plus |
bmm-RA | 2437 | CG5295-RA | 334..1189 | 16..871 | 4280 | 100 | Plus |
dob-RA | 1855 | CG5560-RA | 511..769 | 323..581 | 305 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14778339..14779023 | 860..176 | 3425 | 100 | Minus |
3L | 28110227 | 3L | 14785918..14786079 | 177..16 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:24:00 has no hits.
BS06769.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:34 Download gff for
BS06769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5295-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:15 Download gff for
BS06769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5295-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:43 Download gff for
BS06769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bmm-RA | 329..1189 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:54 Download gff for
BS06769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bmm-RA | 329..1189 | 9..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:54 Download gff for
BS06769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14778339..14779022 | 177..860 | 100 | <- | Minus |
3L | 14785919..14786084 | 9..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:43 Download gff for
BS06769.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14771439..14772122 | 177..860 | 100 | <- | Minus |
arm_3L | 14779019..14779184 | 9..176 | 97 | | Minus |
BS06769.complete Sequence
1556 bp (1556 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635613
> BS06769.complete
GAAGTTATCAGTCGACATGAATCTATCATTCGCTGGCTGCGGATTCCTGG
GCATCTACCACGTCGGAGTGGCCGTCTGCTTCAAGAAGTATGCACCGCAT
CTGTTGCTGGAGAAGATCGGAGGCGCTTCGGCCGGTTCCCTGGCCGCCTG
CTGTCTCCTCTGCGATTTGCCATTGGGCAGCATGACTTCGGACTTCTTCA
GGGTGGTGAACGAAGCTCGTCGCTACTCCCTGGGTCCCTTCAGTCCCTCC
TTCAACATCCAGACCTGTCTGCTGGAGGGTCTACAGAAGCATCTACCAGA
CGATGCTCACAAGCGGGTGAATGGACGACTGCACATTTCGCTTACCCGCG
TGTACGATGGCAAGAACGTGATCATCTCGGAGTTTGAGTCACGGGAAGAG
GTCCTGCAGGCGCTGTTGTGTGCGTGCTTCATACCCGGATTCTCCGGCAT
CTTGCCGCCCAGATTCCGTGGCGTTCGCTACATGGATGGTGCCTTCTCGG
ACAATCTGCCCATTCTGGACGAGAACACCATTACGGTCAGTCCGTTCTGC
GGCGAGAGTGATATTTGCCCGAGGGATCAGAGCTCGCAGCTCTTCCATCT
GAATTGGGCCAACACCAGCATCGAGATCTCCAGACAGAACATCAATCGCT
TCGTGCGCATCCTTTTTCCGCCGCGTCCCGAGTTTCTGTCCAAGTTCTGC
CAGCAGGGATTCGATGATGCCCTGCAATTCCTGCATCGCAACAATCTGAT
CAACTGTCGACGCTGCGTGGCGGTTCAGTCGACATTCGTGGTTTCCGAAA
CGGTGGCCCAGCCCCAGGAGTTCGATCCCGAGTGCAGGGAGTGCAAGAAG
CACAGAAAGGACGCTTTGAGCTCAAACATGCCCCAAACGGTACTGGATGT
CATTCAGGACTATATCGAACAAGCCAATAAGGGTCTGGCCAACTGGATTT
TCAAGCATCGCGGCATTAAGCTGCTTTCCCTACCAGCCACAGTGCCCATG
GACTTTCTGCTGGCCACCATTTCAAAAATATCAGCACTGACGCCCAAACT
TACCAAGCAGGCCAGAGTAATGGTGGAGGACTTAATTTTGCAGTTGAACC
ACGCCATGCGGATACGACTGCTAAATAAATTCACGCTCTATGACCAGCCT
CACTTCGATGCCACAGGACTTCTTCATTCCAGCCGCTTATATGGACCCCG
TGTTTCAATCCTTGTGGATGAATGTGGAGCCACACCGCTAGAGGACGATG
TCGACAACTTTGAGCATGTCCTCAAGATGACCACGCACAACGACGCTCTA
TATGCCTATTACTATACTGACAGCAACACGAACAAGGTGAAAGTAACCGA
GATCTTTGACTTTGACGAAATAACGGAGCACGACAAGCTGGCCACCGATC
TGCAGATCTACGAAGGCTCTGTCGAAGATCACCCCAATCCCCACCAGCAC
AGCCACAATACGGTGGTCAGCGAATGGAATGGCGTCGAATCAGTACAAGT
AATGCCCACGACTCCTGAACTACACGACGTAGCCTTTTAAAAGCTTTCTA
GACCAT
BS06769.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bmm-RA | 1524 | CG5295-PA | 1..1524 | 17..1540 | 7620 | 100 | Plus |
bmm-RB | 1662 | CG5295-PB | 1..1477 | 17..1493 | 7385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bmm-RA | 2437 | CG5295-RA | 334..1859 | 16..1541 | 7630 | 100 | Plus |
bmm-RB | 2301 | CG5295-RB | 334..1811 | 16..1493 | 7390 | 100 | Plus |
dob-RA | 1855 | CG5560-RA | 511..769 | 323..581 | 290 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14778339..14779023 | 860..176 | 3425 | 100 | Minus |
3L | 28110227 | 3L | 14777339..14777608 | 1493..1224 | 1350 | 100 | Minus |
3L | 28110227 | 3L | 14778111..14778279 | 1026..858 | 845 | 100 | Minus |
3L | 28110227 | 3L | 14785918..14786079 | 177..16 | 810 | 100 | Minus |
3L | 28110227 | 3L | 14777933..14778041 | 1135..1027 | 545 | 100 | Minus |
3L | 28110227 | 3L | 14777678..14777767 | 1224..1135 | 450 | 100 | Minus |
3L | 28110227 | 3L | 14777194..14777244 | 1541..1491 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:51:23 has no hits.
BS06769.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:44 Download gff for
BS06769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bmm-RA | 1..1524 | 17..1540 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:34 Download gff for
BS06769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bmm-RA | 340..1877 | 9..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:46 Download gff for
BS06769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bmm-RA | 335..1856 | 17..1538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:44 Download gff for
BS06769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bmm-RA | 340..1877 | 9..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:04 Download gff for
BS06769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bmm-RA | 335..1856 | 17..1538 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:04 Download gff for
BS06769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14785919..14786078 | 17..176 | 100 | | Minus |
3L | 14777197..14777241 | 1494..1538 | 100 | <- | Minus |
3L | 14777339..14777607 | 1225..1493 | 100 | <- | Minus |
3L | 14777678..14777766 | 1136..1224 | 100 | <- | Minus |
3L | 14777933..14778041 | 1027..1135 | 100 | <- | Minus |
3L | 14778111..14778277 | 860..1026 | 100 | <- | Minus |
3L | 14778340..14779022 | 177..859 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:46 Download gff for
BS06769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14770297..14770341 | 1494..1538 | 100 | <- | Minus |
arm_3L | 14770439..14770707 | 1225..1493 | 100 | <- | Minus |
arm_3L | 14770778..14770866 | 1136..1224 | 100 | <- | Minus |
arm_3L | 14771033..14771141 | 1027..1135 | 100 | <- | Minus |
arm_3L | 14771211..14771377 | 860..1026 | 100 | <- | Minus |
arm_3L | 14771440..14772122 | 177..859 | 100 | <- | Minus |
arm_3L | 14779019..14779178 | 17..176 | 100 | | Minus |
BS06769.pep Sequence
Translation from 16 to 1539
> BS06769.pep
MNLSFAGCGFLGIYHVGVAVCFKKYAPHLLLEKIGGASAGSLAACCLLCD
LPLGSMTSDFFRVVNEARRYSLGPFSPSFNIQTCLLEGLQKHLPDDAHKR
VNGRLHISLTRVYDGKNVIISEFESREEVLQALLCACFIPGFSGILPPRF
RGVRYMDGAFSDNLPILDENTITVSPFCGESDICPRDQSSQLFHLNWANT
SIEISRQNINRFVRILFPPRPEFLSKFCQQGFDDALQFLHRNNLINCRRC
VAVQSTFVVSETVAQPQEFDPECRECKKHRKDALSSNMPQTVLDVIQDYI
EQANKGLANWIFKHRGIKLLSLPATVPMDFLLATISKISALTPKLTKQAR
VMVEDLILQLNHAMRIRLLNKFTLYDQPHFDATGLLHSSRLYGPRVSILV
DECGATPLEDDVDNFEHVLKMTTHNDALYAYYYTDSNTNKVKVTEIFDFD
EITEHDKLATDLQIYEGSVEDHPNPHQHSHNTVVSEWNGVESVQVMPTTP
ELHDVAF*
BS06769.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bmm-PA | 507 | CG5295-PA | 1..507 | 1..507 | 2686 | 100 | Plus |
bmm-PB | 553 | CG5295-PB | 1..492 | 1..492 | 2607 | 100 | Plus |
dob-PA | 480 | CG5560-PA | 8..293 | 2..288 | 937 | 61.2 | Plus |