Clone BS06769 Report

Search the DGRC for BS06769

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:69
Vector:pDNR-Dual
Associated Gene/Transcriptbmm-RA
Protein status:BS06769.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06769.3prime Sequence

939 bp (759 high quality bases) assembled on 2005-12-04

> BS06769.3prime
ATGGTCTAGAAAGCTTTTAAAAGGCTACGTCGTGTAGTTCAGGAGTCGTG
GGCATTACTTGTACTGATTCGACGCCATTCCATTCGCTGACCACCGTATT
GTGGCTGTGCTGGTGGGGATTGGGGTGATCTTCGACAGAGCCTTCGTAGA
TCTGCAGATCGGTGGCCAGCTTGTCGTGCTCCGTTATTTCGTCAAAGTCA
AAGATCTCGGTTACTTTCACCTTGTTCGTGTTGCTGTCAGTATAGTAATA
GGCATATAGAGCGTCGTTGTGCGTGGTCATCTTGAGGACATGCTCAAAGT
TGTCGACATCGTCCTCTAGCGGTGTGGCTCCACATTCATCCACAAGGATT
GAAACACGGGGTCCATATAAGCGGCTGGAATGAAGAAGTCCTGTGGCATC
GAAGTGAGGCTGGTCATAGAGCGTGAATTTATTTAGCAGTCGTATCCGCA
TGGCGTGGTTCAACTGCAAAATTAAGTCCTCCACCATTACTCTGGCCTGC
TTGGTAAGTTTGGGCGTCAGTGCTGATATTTTTGAAATGGTGGCCAGCAG
AAAGTCCATGGGCACTGTGGCTGGTAGGGAAAGCAGCTTAATGCCGCGAT
GCTTGAAAATCCAGTTGGCCAGACCCTTATTGGCTTGTTCGATATAGTCC
TGAATGACATCCAGTACCGTTTGGGGCATGTTTGAGCTCAAAGCGTCCTT
TCTGTGCTTCTTGCACTCCCTGCACTCGGGATCGAACTCCTGGGGCTGGG
CCACCGTTTCGGAAACCACGAATGTCGACTGAACCGCCACGCAGCGTCGA
CAGTTGATCAGATTGTTGCGATGCAGGAATTGCAGGGCATCATCGAATCC
CTGCTGGCAGAACTTGGACAGAAACTCGGGACGCGGCGGAAAAAGGATGC
GCACGAAGCGATTGATGTTCTGTCTGGAGATCTCGATGC

BS06769.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5295-PA 1524 CG5295-RA 602..1524 939..17 4615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
bmm-RA 2437 CG5295-RA 936..1859 939..16 4620 100 Minus
bmm-RB 2301 CG5295-RB 936..1811 939..64 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14777339..14777608 64..333 1350 100 Plus
3L 28110227 3L 14778339..14778581 697..939 1215 100 Plus
3L 28110227 3L 14778111..14778279 531..699 845 100 Plus
3L 28110227 3L 14777933..14778041 422..530 545 100 Plus
3L 28110227 3L 14777678..14777767 333..422 450 100 Plus
3L 28110227 3L 14777194..14777244 16..66 255 100 Plus
Blast to na_te.dros performed on 2015-02-09 01:18:41 has no hits.

BS06769.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:33 Download gff for BS06769.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5295-PA 602..1524 17..939 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:13 Download gff for BS06769.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5295-PA 602..1524 17..939 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:53:28 Download gff for BS06769.3prime
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 936..1866 7..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:48 Download gff for BS06769.3prime
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 936..1866 7..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:48 Download gff for BS06769.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14777187..14777241 7..63 92 <- Plus
3L 14777339..14777607 64..332 100 <- Plus
3L 14777678..14777766 333..421 100 <- Plus
3L 14777933..14778041 422..530 100 <- Plus
3L 14778111..14778277 531..697 100 <- Plus
3L 14778340..14778581 698..939 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:53:28 Download gff for BS06769.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14770287..14770341 7..63 92 <- Plus
arm_3L 14770439..14770707 64..332 100 <- Plus
arm_3L 14770778..14770866 333..421 100 <- Plus
arm_3L 14771033..14771141 422..530 100 <- Plus
arm_3L 14771211..14771377 531..697 100 <- Plus
arm_3L 14771440..14771681 698..939 100   Plus

BS06769.5prime Sequence

871 bp (832 high quality bases) assembled on 2005-12-04

> BS06769.5prime
GAAGTTATCAGTCGACATGAATCTATCATTCGCTGGCTGCGGATTCCTGG
GCATCTACCACGTCGGAGTGGCCGTCTGCTTCAAGAAGTATGCACCGCAT
CTGTTGCTGGAGAAGATCGGAGGCGCTTCGGCCGGTTCCCTGGCCGCCTG
CTGTCTCCTCTGCGATTTGCCATTGGGCAGCATGACTTCGGACTTCTTCA
GGGTGGTGAACGAAGCTCGTCGCTACTCCCTGGGTCCCTTCAGTCCCTCC
TTCAACATCCAGACCTGTCTGCTGGAGGGTCTACAGAAGCATCTACCAGA
CGATGCTCACAAGCGGGTGAATGGACGACTGCACATTTCGCTTACCCGCG
TGTACGATGGCAAGAACGTGATCATCTCGGAGTTTGAGTCACGGGAAGAG
GTCCTGCAGGCGCTGTTGTGTGCGTGCTTCATACCCGGATTCTCCGGCAT
CTTGCCGCCCAGATTCCGTGGCGTTCGCTACATGGATGGTGCCTTCTCGG
ACAATCTGCCCATTCTGGACGAGAACACCATTACGGTCAGTCCGTTCTGC
GGCGAGAGTGATATTTGCCCGAGGGATCAGAGCTCGCAGCTCTTCCATCT
GAATTGGGCCAACACCAGCATCGAGATCTCCAGACAGAACATCAATCGCT
TCGTGCGCATCCTTTTTCCGCCGCGTCCCGAGTTTCTGTCCAAGTTCTGC
CAGCAGGGATTCGATGATGCCCTGCAATTCCTGCATCGCAACAATCTGAT
CAACTGTCGACGCTGCGTGGCGGTTCAGTCGACATTCGTGGTTTCCGAAA
CGGTGGCCCAGCCCCAGGAGTTCGATCCCGAGTGCAGGGAGTGCAAGAAG
CACAGAAAGGACGCTTTGAGC

BS06769.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5295-PA 1524 CG5295-RA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
bmm-RB 2301 CG5295-RB 334..1189 16..871 4280 100 Plus
bmm-RA 2437 CG5295-RA 334..1189 16..871 4280 100 Plus
dob-RA 1855 CG5560-RA 511..769 323..581 305 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14778339..14779023 860..176 3425 100 Minus
3L 28110227 3L 14785918..14786079 177..16 810 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:24:00 has no hits.

BS06769.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:34 Download gff for BS06769.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5295-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:15 Download gff for BS06769.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5295-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:43 Download gff for BS06769.5prime
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 329..1189 9..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:54 Download gff for BS06769.5prime
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 329..1189 9..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:54 Download gff for BS06769.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14778339..14779022 177..860 100 <- Minus
3L 14785919..14786084 9..176 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:43 Download gff for BS06769.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14771439..14772122 177..860 100 <- Minus
arm_3L 14779019..14779184 9..176 97   Minus

BS06769.complete Sequence

1556 bp (1556 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635613

> BS06769.complete
GAAGTTATCAGTCGACATGAATCTATCATTCGCTGGCTGCGGATTCCTGG
GCATCTACCACGTCGGAGTGGCCGTCTGCTTCAAGAAGTATGCACCGCAT
CTGTTGCTGGAGAAGATCGGAGGCGCTTCGGCCGGTTCCCTGGCCGCCTG
CTGTCTCCTCTGCGATTTGCCATTGGGCAGCATGACTTCGGACTTCTTCA
GGGTGGTGAACGAAGCTCGTCGCTACTCCCTGGGTCCCTTCAGTCCCTCC
TTCAACATCCAGACCTGTCTGCTGGAGGGTCTACAGAAGCATCTACCAGA
CGATGCTCACAAGCGGGTGAATGGACGACTGCACATTTCGCTTACCCGCG
TGTACGATGGCAAGAACGTGATCATCTCGGAGTTTGAGTCACGGGAAGAG
GTCCTGCAGGCGCTGTTGTGTGCGTGCTTCATACCCGGATTCTCCGGCAT
CTTGCCGCCCAGATTCCGTGGCGTTCGCTACATGGATGGTGCCTTCTCGG
ACAATCTGCCCATTCTGGACGAGAACACCATTACGGTCAGTCCGTTCTGC
GGCGAGAGTGATATTTGCCCGAGGGATCAGAGCTCGCAGCTCTTCCATCT
GAATTGGGCCAACACCAGCATCGAGATCTCCAGACAGAACATCAATCGCT
TCGTGCGCATCCTTTTTCCGCCGCGTCCCGAGTTTCTGTCCAAGTTCTGC
CAGCAGGGATTCGATGATGCCCTGCAATTCCTGCATCGCAACAATCTGAT
CAACTGTCGACGCTGCGTGGCGGTTCAGTCGACATTCGTGGTTTCCGAAA
CGGTGGCCCAGCCCCAGGAGTTCGATCCCGAGTGCAGGGAGTGCAAGAAG
CACAGAAAGGACGCTTTGAGCTCAAACATGCCCCAAACGGTACTGGATGT
CATTCAGGACTATATCGAACAAGCCAATAAGGGTCTGGCCAACTGGATTT
TCAAGCATCGCGGCATTAAGCTGCTTTCCCTACCAGCCACAGTGCCCATG
GACTTTCTGCTGGCCACCATTTCAAAAATATCAGCACTGACGCCCAAACT
TACCAAGCAGGCCAGAGTAATGGTGGAGGACTTAATTTTGCAGTTGAACC
ACGCCATGCGGATACGACTGCTAAATAAATTCACGCTCTATGACCAGCCT
CACTTCGATGCCACAGGACTTCTTCATTCCAGCCGCTTATATGGACCCCG
TGTTTCAATCCTTGTGGATGAATGTGGAGCCACACCGCTAGAGGACGATG
TCGACAACTTTGAGCATGTCCTCAAGATGACCACGCACAACGACGCTCTA
TATGCCTATTACTATACTGACAGCAACACGAACAAGGTGAAAGTAACCGA
GATCTTTGACTTTGACGAAATAACGGAGCACGACAAGCTGGCCACCGATC
TGCAGATCTACGAAGGCTCTGTCGAAGATCACCCCAATCCCCACCAGCAC
AGCCACAATACGGTGGTCAGCGAATGGAATGGCGTCGAATCAGTACAAGT
AATGCCCACGACTCCTGAACTACACGACGTAGCCTTTTAAAAGCTTTCTA
GACCAT

BS06769.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
bmm-RA 1524 CG5295-PA 1..1524 17..1540 7620 100 Plus
bmm-RB 1662 CG5295-PB 1..1477 17..1493 7385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
bmm-RA 2437 CG5295-RA 334..1859 16..1541 7630 100 Plus
bmm-RB 2301 CG5295-RB 334..1811 16..1493 7390 100 Plus
dob-RA 1855 CG5560-RA 511..769 323..581 290 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14778339..14779023 860..176 3425 100 Minus
3L 28110227 3L 14777339..14777608 1493..1224 1350 100 Minus
3L 28110227 3L 14778111..14778279 1026..858 845 100 Minus
3L 28110227 3L 14785918..14786079 177..16 810 100 Minus
3L 28110227 3L 14777933..14778041 1135..1027 545 100 Minus
3L 28110227 3L 14777678..14777767 1224..1135 450 100 Minus
3L 28110227 3L 14777194..14777244 1541..1491 255 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:51:23 has no hits.

BS06769.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:44 Download gff for BS06769.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 1..1524 17..1540 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:34 Download gff for BS06769.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 340..1877 9..1550 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:46 Download gff for BS06769.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 335..1856 17..1538 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:44 Download gff for BS06769.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 340..1877 9..1550 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:04 Download gff for BS06769.complete
Subject Subject Range Query Range Percent Splice Strand
bmm-RA 335..1856 17..1538 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:04 Download gff for BS06769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14785919..14786078 17..176 100   Minus
3L 14777197..14777241 1494..1538 100 <- Minus
3L 14777339..14777607 1225..1493 100 <- Minus
3L 14777678..14777766 1136..1224 100 <- Minus
3L 14777933..14778041 1027..1135 100 <- Minus
3L 14778111..14778277 860..1026 100 <- Minus
3L 14778340..14779022 177..859 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:46 Download gff for BS06769.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14770297..14770341 1494..1538 100 <- Minus
arm_3L 14770439..14770707 1225..1493 100 <- Minus
arm_3L 14770778..14770866 1136..1224 100 <- Minus
arm_3L 14771033..14771141 1027..1135 100 <- Minus
arm_3L 14771211..14771377 860..1026 100 <- Minus
arm_3L 14771440..14772122 177..859 100 <- Minus
arm_3L 14779019..14779178 17..176 100   Minus

BS06769.pep Sequence

Translation from 16 to 1539

> BS06769.pep
MNLSFAGCGFLGIYHVGVAVCFKKYAPHLLLEKIGGASAGSLAACCLLCD
LPLGSMTSDFFRVVNEARRYSLGPFSPSFNIQTCLLEGLQKHLPDDAHKR
VNGRLHISLTRVYDGKNVIISEFESREEVLQALLCACFIPGFSGILPPRF
RGVRYMDGAFSDNLPILDENTITVSPFCGESDICPRDQSSQLFHLNWANT
SIEISRQNINRFVRILFPPRPEFLSKFCQQGFDDALQFLHRNNLINCRRC
VAVQSTFVVSETVAQPQEFDPECRECKKHRKDALSSNMPQTVLDVIQDYI
EQANKGLANWIFKHRGIKLLSLPATVPMDFLLATISKISALTPKLTKQAR
VMVEDLILQLNHAMRIRLLNKFTLYDQPHFDATGLLHSSRLYGPRVSILV
DECGATPLEDDVDNFEHVLKMTTHNDALYAYYYTDSNTNKVKVTEIFDFD
EITEHDKLATDLQIYEGSVEDHPNPHQHSHNTVVSEWNGVESVQVMPTTP
ELHDVAF*

BS06769.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
bmm-PA 507 CG5295-PA 1..507 1..507 2686 100 Plus
bmm-PB 553 CG5295-PB 1..492 1..492 2607 100 Plus
dob-PA 480 CG5560-PA 8..293 2..288 937 61.2 Plus