Clone BS06772 Report

Search the DGRC for BS06772

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptPk17E-RA
Protein status:BS06772.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06772.3prime Sequence

937 bp (807 high quality bases) assembled on 2005-12-04

> BS06772.3prime
ATGGTCTAGAAAGCTTCTAGAAGTCCAGGAAAGCATCGATGGCACACTGA
TTGGTCAGCTGGTCGAAATGCCTGTCCTCGTAGATACGGATTCCATCCCT
GGCTATAATCTCCCGAGGCGAGAGACTTAGCAGCTGCTTGGAGCTCAGGT
TATAGTCCTTGTAGATGGCAATCCTTTGGAGCGCCATCACACTGCGGATA
CGCTGGCGCGGCTCAATGGTGAGCAGCTTGCGCAGCACATCCCTGCCCTC
GTGGGTGAGGTGCTGCACCTCCTCCGGCAGGAAGTCCTCGCTGTCGCCGT
CACTGTCCTGCAGGCAGCCGTTGATCTGAGCAATGGATGGGGCATTGGAC
AGGCCGTCCTCCGGCTCCACGCTCTCACGCCGTCGCAGTAGGTGGCGTTT
GATGTTGGGCGACTTCTGCGTCAGCATCTGACAGGCAATAACGCCCAAGG
CCCACCAGTCCACCGCATGGCCATAGGGTTCCCCGCACAGAATCTCCGGG
GCCATGTATTTGAAAGTGCCACACATGGTGCGCGTGTTTGCCCCCAGTTT
GAGCCACTTGCTAAGGCCGAAGTCGGTTAGCTTTATGTGAAACTGTTCAG
TTAGCAGGATGTTCTCCGGCTTCGCATCACGATATATAATCCCAGCGTTG
TGGAGAAAATCCAAGGCAAGTGCTATCTCGCCAATGTATAAACGAACCAG
ATCAATGGAGAAGTGAGTTATTTTTGAGAACAACTCGCCGTTGGGTACGT
ACTCCGATAGAATATGGAGGTTGTGGCGGTTTTGCCACAGATCTATTTGC
TTCACGATAAACGGATGATGGCCGCAAACCTTCTGAATGTCCGCCTCGTC
CTTTATCTGCCGTACACTGTTGTCTTCGATGAGCTTTGATTTCTTTAGCA
CTTTCAGGGCGTAGCACTGACTAATGTCACTCTTGCT

BS06772.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7001-PA 1452 Pk17E-RA 532..1452 937..17 4605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Pk17E-RC 2123 CG7001-RC 894..1814 937..17 4605 100 Minus
Pk17E-RB 1651 CG7001-RB 422..1342 937..17 4605 100 Minus
Pk17E-RA 2129 CG7001-RA 900..1820 937..17 4605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18805292..18805581 414..125 1450 100 Minus
X 23542271 X 18791300..18791459 661..502 800 100 Minus
X 23542271 X 18790956..18791081 885..760 630 100 Minus
X 23542271 X 18805641..18805748 124..17 540 100 Minus
X 23542271 X 18791146..18791244 759..661 495 100 Minus
X 23542271 X 18793758..18793847 502..413 450 100 Minus
X 23542271 X 18790840..18790893 937..884 270 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:19:20 has no hits.

BS06772.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:40 Download gff for BS06772.3prime
Subject Subject Range Query Range Percent Splice Strand
Pk17E-PA 532..1452 17..937 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:23 Download gff for BS06772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7001-PA 532..1452 17..937 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:53:35 Download gff for BS06772.3prime
Subject Subject Range Query Range Percent Splice Strand
Pk17E-RA 900..1823 13..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:52 Download gff for BS06772.3prime
Subject Subject Range Query Range Percent Splice Strand
Pk17E-RA 900..1823 13..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:52 Download gff for BS06772.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18793759..18793847 413..501 100 -> Minus
X 18791146..18791244 661..759 100 -> Minus
X 18791301..18791459 502..660 100 -> Minus
X 18790840..18790893 884..937 100 -> Minus
X 18790958..18791081 760..883 100 -> Minus
X 18805294..18805581 125..412 100 -> Minus
X 18805641..18805751 13..124 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:53:35 Download gff for BS06772.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18685179..18685277 661..759 100 -> Minus
arm_X 18685334..18685492 502..660 100 -> Minus
arm_X 18687792..18687880 413..501 100 -> Minus
arm_X 18684873..18684926 884..937 100 -> Minus
arm_X 18684991..18685114 760..883 100 -> Minus
arm_X 18699327..18699614 125..412 100 -> Minus
arm_X 18699674..18699784 13..124 98   Minus

BS06772.5prime Sequence

944 bp (821 high quality bases) assembled on 2005-12-04

> BS06772.5prime
GAAGTTATCAGTCGACATGGGCAACTCGCAACCGCGTAATGCAAGCAGAA
GCAGAAGGACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCA
GCCAGCGATCACCACTACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCA
GCAGCAACAACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGT
TCCAGGCCCACACCAACCAGCCAACACAGTCGCATCCTCCGGGCGACGAG
GAACAGCCTGTACAATCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGG
CAGCCTTAGCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACT
CATTTCGTCATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCACTTCAT
GGCTCTCGTCGTGGCAAGACTCAGTGGCACCGACCTCTGACCAACTCAAT
CTTCAACTCGCACTTTAAGGAGACCAGCAAGAACGATCTGTACCGTATCG
ATCATTTGGTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGC
AAGAGTGACATTAGTCAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAA
GCTCATCGAAGACAACAGTGTACGGCAGATAAAGGACGAGGCGGACATTC
AGAAGGTTTGCGGCCATCATCCGTTTATCGTGAAGCAAATAGATCTGTGG
CAAAACCGCCACAACCTCCATATTCTATCGGAGTACGTACCCAACGGCGA
GTTGTTCTCAAAAATAACTCACTTCTCCATTGATCTGGTTCGTTTATACA
TTGGCGAGATAGCACTTGCCTTGGATTTTCTCCCACACGCTGGGATTATA
TATCGTGATGCGAAGCCGGAGAACATCCTGCTAACTGAACAGTTTCACAT
AAAGCTAACCGACTTCGGCCTTAGCAAGTGGCTCAAACTTGGGG

BS06772.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7001-PA 1452 Pk17E-RA 1..817 17..833 4085 100 Plus
CG7001-PA 1452 Pk17E-RA 821..923 837..939 515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pk17E-RA 2129 CG7001-RA 369..1296 17..944 4580 99.7 Plus
Pk17E-RC 2123 CG7001-RC 369..1290 17..944 4480 99 Plus
Pk17E-RB 1651 CG7001-RB 145..818 271..944 3310 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18788832..18789089 17..274 1290 100 Plus
X 23542271 X 18790675..18790893 383..601 1095 100 Plus
X 23542271 X 18790956..18791081 600..725 630 100 Plus
X 23542271 X 18790503..18790615 272..384 565 100 Plus
X 23542271 X 18791300..18791420 824..944 545 96.7 Plus
X 23542271 X 18791146..18791244 726..824 495 100 Plus
Blast to na_te.dros performed 2015-02-10 21:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6887 147..304 202 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6996 70..279 198 60.6 Plus

BS06772.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:40 Download gff for BS06772.5prime
Subject Subject Range Query Range Percent Splice Strand
Pk17E-PA 1..927 17..944 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:24 Download gff for BS06772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7001-PA 1..927 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:43:22 Download gff for BS06772.5prime
Subject Subject Range Query Range Percent Splice Strand
Pk17E-RA 369..1295 17..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:16 Download gff for BS06772.5prime
Subject Subject Range Query Range Percent Splice Strand
Pk17E-RA 369..1295 17..944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:16 Download gff for BS06772.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18790506..18790615 275..384 100 -> Plus
X 18791301..18791419 825..944 97   Plus
X 18790677..18790893 385..601 100 -> Plus
X 18790958..18791081 602..725 100 -> Plus
X 18791146..18791244 726..824 100 -> Plus
X 18788832..18789089 17..274 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:43:22 Download gff for BS06772.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18682865..18683122 17..274 100 -> Plus
arm_X 18684539..18684648 275..384 100 -> Plus
arm_X 18684710..18684926 385..601 100 -> Plus
arm_X 18684991..18685114 602..725 100 -> Plus
arm_X 18685179..18685277 726..824 100 -> Plus
arm_X 18685334..18685452 825..944 97   Plus

BS06772.complete Sequence

1484 bp (1484 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635614

> BS06772.complete
GAAGTTATCAGTCGACATGGGCAACTCGCAACCGCGTAATGCAAGCAGAA
GCAGAAGGACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCA
GCCAGCGATCACCACTACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCA
GCAGCAACAACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGT
TCCAGGCCCACACCAACCAGCCAACACAGTCGCATCCTCCGGGCGACGAG
GAACAGCCTGTACAATCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGG
CAGCCTTAGCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACT
CATTTCGTCATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCACTTCAT
GGCTCTCGTCGTGGCAAGACTCAGTGGCACCGACCTCTGACCAACTCAAT
CTTCAACTCGCACTTTAAGGAGACCAGCAAGAACGATCTGTACCGTATCG
ATCATTTGGTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGC
AAGAGTGACATTAGTCAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAA
GCTCATCGAAGACAACAGTGTACGGCAGATAAAGGACGAGGCGGACATTC
AGAAGGTTTGCGGCCATCATCCGTTTATCGTGAAGCAAATAGATCTGTGG
CAAAACCGCCACAACCTCCATATTCTATCGGAGTACGTACCCAACGGCGA
GTTGTTCTCAAAAATAACTCACTTCTCCATTGATCTGGTTCGTTTATACA
TTGGCGAGATAGCACTTGCCTTGGATTTTCTCCACAACGCTGGGATTATA
TATCGTGATGCGAAGCCGGAGAACATCCTGCTAACTGAACAGTTTCACAT
AAAGCTAACCGACTTCGGCCTTAGCAAGTGGCTCAAACTGGGGGCAAACA
CGCGCACCATGTGTGGCACTTTCAAATACATGGCCCCGGAGATTCTGTGC
GGGGAACCCTATGGCCATGCGGTGGACTGGTGGGCCTTGGGCGTTATTGC
CTGTCAGATGCTGACGCAGAAGTCGCCCAACATCAAACGCCACCTACTGC
GACGGCGTGAGAGCGTGGAGCCGGAGGACGGCCTGTCCAATGCCCCATCC
ATTGCTCAGATCAACGGCTGCCTGCAGGACAGTGACGGCGACAGCGAGGA
CTTCCTGCCGGAGGAGGTGCAGCACCTCACCCACGAGGGCAGGGATGTGC
TGCGCAAGCTGCTCACCATTGAGCCGCGCCAGCGTATCCGCAGTGTGATG
GCGCTCCAAAGGATTGCCATCTACAAGGACTATAACCTGAGCTCCAAGCA
GCTGCTAAGTCTCTCGCCTCGGGAGATTATAGCCAGGGATGGAATCCGTA
TCTACGAGGACAGGCATTTCGACCAGCTGACCAATCAGTGTGCCATCGAT
GCTTTCCTGGACTTCTAGAAGCTTTCTAGACCAT

BS06772.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Pk17E-RA 1452 CG7001-PA 1..1452 17..1468 7260 100 Plus
Pk17E-RC 1446 CG7001-PC 1..1446 17..1468 7135 99.6 Plus
Pk17E-RB 510 CG7001-PB 1..510 959..1468 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Pk17E-RA 2129 CG7001-RA 369..1820 17..1468 7260 100 Plus
Pk17E-RC 2123 CG7001-RC 369..1814 17..1468 7135 99.6 Plus
Pk17E-RB 1651 CG7001-RB 145..1342 271..1468 5990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18805292..18805581 1071..1360 1450 100 Plus
X 23542271 X 18788832..18789089 17..274 1290 100 Plus
X 23542271 X 18790675..18790893 383..601 1095 100 Plus
X 23542271 X 18791300..18791459 824..983 800 100 Plus
X 23542271 X 18790956..18791081 600..725 630 100 Plus
X 23542271 X 18790503..18790615 272..384 565 100 Plus
X 23542271 X 18805641..18805748 1361..1468 540 100 Plus
X 23542271 X 18791146..18791244 726..824 495 100 Plus
X 23542271 X 18793758..18793847 983..1072 450 100 Plus
Blast to na_te.dros performed 2014-11-28 05:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6887 147..304 202 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6996 70..279 198 60.6 Plus

BS06772.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:34 Download gff for BS06772.complete
Subject Subject Range Query Range Percent Splice Strand
Pk17E-RA 1..1452 17..1468 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:42 Download gff for BS06772.complete
Subject Subject Range Query Range Percent Splice Strand
Pk17E-RA 367..1818 17..1468 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:35 Download gff for BS06772.complete
Subject Subject Range Query Range Percent Splice Strand
Pk17E-RA 369..1820 17..1468 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:34 Download gff for BS06772.complete
Subject Subject Range Query Range Percent Splice Strand
Pk17E-RA 367..1821 17..1472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:17 Download gff for BS06772.complete
Subject Subject Range Query Range Percent Splice Strand
Pk17E-RA 369..1820 17..1468 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:17 Download gff for BS06772.complete
Subject Subject Range Query Range Percent Splice Strand
X 18790677..18790893 385..601 100 -> Plus
X 18791146..18791244 726..824 100 -> Plus
X 18790958..18791081 602..725 100 -> Plus
X 18791301..18791459 825..983 100 -> Plus
X 18793759..18793847 984..1072 100 -> Plus
X 18788832..18789089 17..274 100 -> Plus
X 18790506..18790615 275..384 100 -> Plus
X 18805294..18805581 1073..1360 100 -> Plus
X 18805641..18805748 1361..1468 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:35 Download gff for BS06772.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18684539..18684648 275..384 100 -> Plus
arm_X 18684710..18684926 385..601 100 -> Plus
arm_X 18684991..18685114 602..725 100 -> Plus
arm_X 18685179..18685277 726..824 100 -> Plus
arm_X 18682865..18683122 17..274 100 -> Plus
arm_X 18685334..18685492 825..983 100 -> Plus
arm_X 18687792..18687880 984..1072 100 -> Plus
arm_X 18699327..18699614 1073..1360 100 -> Plus
arm_X 18699674..18699781 1361..1468 100   Plus

BS06772.pep Sequence

Translation from 16 to 1467

> BS06772.pep
MGNSQPRNASRSRRTSQWPQGAAELGASASDHHYHQEELYQEQQQQQQQP
QQEQPSSRRIQFQAHTNQPTQSHPPGDEEQPVQSQQQQLSTWSLGSLSGG
RLNWSFSGARNSFRHRNKATRKSLTSLHGSRRGKTQWHRPLTNSIFNSHF
KETSKNDLYRIDHLVAKGAFGVVFKVSSKSDISQCYALKVLKKSKLIEDN
SVRQIKDEADIQKVCGHHPFIVKQIDLWQNRHNLHILSEYVPNGELFSKI
THFSIDLVRLYIGEIALALDFLHNAGIIYRDAKPENILLTEQFHIKLTDF
GLSKWLKLGANTRTMCGTFKYMAPEILCGEPYGHAVDWWALGVIACQMLT
QKSPNIKRHLLRRRESVEPEDGLSNAPSIAQINGCLQDSDGDSEDFLPEE
VQHLTHEGRDVLRKLLTIEPRQRIRSVMALQRIAIYKDYNLSSKQLLSLS
PREIIARDGIRIYEDRHFDQLTNQCAIDAFLDF*

BS06772.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Pk17E-PA 483 CG7001-PA 1..483 1..483 2544 100 Plus
Pk17E-PC 481 CG7001-PC 1..481 1..483 2521 99.6 Plus
Pk17E-PB 169 CG7001-PB 1..169 315..483 889 100 Plus
S6k-PB 490 CG10539-PB 77..324 159..426 387 36.7 Plus
S6k-PA 490 CG10539-PA 77..324 159..426 387 36.7 Plus