Clone Sequence Records
BS06772.3prime Sequence
937 bp (807 high quality bases) assembled on 2005-12-04
> BS06772.3prime
ATGGTCTAGAAAGCTTCTAGAAGTCCAGGAAAGCATCGATGGCACACTGA
TTGGTCAGCTGGTCGAAATGCCTGTCCTCGTAGATACGGATTCCATCCCT
GGCTATAATCTCCCGAGGCGAGAGACTTAGCAGCTGCTTGGAGCTCAGGT
TATAGTCCTTGTAGATGGCAATCCTTTGGAGCGCCATCACACTGCGGATA
CGCTGGCGCGGCTCAATGGTGAGCAGCTTGCGCAGCACATCCCTGCCCTC
GTGGGTGAGGTGCTGCACCTCCTCCGGCAGGAAGTCCTCGCTGTCGCCGT
CACTGTCCTGCAGGCAGCCGTTGATCTGAGCAATGGATGGGGCATTGGAC
AGGCCGTCCTCCGGCTCCACGCTCTCACGCCGTCGCAGTAGGTGGCGTTT
GATGTTGGGCGACTTCTGCGTCAGCATCTGACAGGCAATAACGCCCAAGG
CCCACCAGTCCACCGCATGGCCATAGGGTTCCCCGCACAGAATCTCCGGG
GCCATGTATTTGAAAGTGCCACACATGGTGCGCGTGTTTGCCCCCAGTTT
GAGCCACTTGCTAAGGCCGAAGTCGGTTAGCTTTATGTGAAACTGTTCAG
TTAGCAGGATGTTCTCCGGCTTCGCATCACGATATATAATCCCAGCGTTG
TGGAGAAAATCCAAGGCAAGTGCTATCTCGCCAATGTATAAACGAACCAG
ATCAATGGAGAAGTGAGTTATTTTTGAGAACAACTCGCCGTTGGGTACGT
ACTCCGATAGAATATGGAGGTTGTGGCGGTTTTGCCACAGATCTATTTGC
TTCACGATAAACGGATGATGGCCGCAAACCTTCTGAATGTCCGCCTCGTC
CTTTATCTGCCGTACACTGTTGTCTTCGATGAGCTTTGATTTCTTTAGCA
CTTTCAGGGCGTAGCACTGACTAATGTCACTCTTGCT
BS06772.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7001-PA | 1452 | Pk17E-RA | 532..1452 | 937..17 | 4605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-RC | 2123 | CG7001-RC | 894..1814 | 937..17 | 4605 | 100 | Minus |
Pk17E-RB | 1651 | CG7001-RB | 422..1342 | 937..17 | 4605 | 100 | Minus |
Pk17E-RA | 2129 | CG7001-RA | 900..1820 | 937..17 | 4605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18805292..18805581 | 414..125 | 1450 | 100 | Minus |
X | 23542271 | X | 18791300..18791459 | 661..502 | 800 | 100 | Minus |
X | 23542271 | X | 18790956..18791081 | 885..760 | 630 | 100 | Minus |
X | 23542271 | X | 18805641..18805748 | 124..17 | 540 | 100 | Minus |
X | 23542271 | X | 18791146..18791244 | 759..661 | 495 | 100 | Minus |
X | 23542271 | X | 18793758..18793847 | 502..413 | 450 | 100 | Minus |
X | 23542271 | X | 18790840..18790893 | 937..884 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:19:20 has no hits.
BS06772.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:40 Download gff for
BS06772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-PA | 532..1452 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:23 Download gff for
BS06772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7001-PA | 532..1452 | 17..937 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:53:35 Download gff for
BS06772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 900..1823 | 13..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:52 Download gff for
BS06772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 900..1823 | 13..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:52 Download gff for
BS06772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18793759..18793847 | 413..501 | 100 | -> | Minus |
X | 18791146..18791244 | 661..759 | 100 | -> | Minus |
X | 18791301..18791459 | 502..660 | 100 | -> | Minus |
X | 18790840..18790893 | 884..937 | 100 | -> | Minus |
X | 18790958..18791081 | 760..883 | 100 | -> | Minus |
X | 18805294..18805581 | 125..412 | 100 | -> | Minus |
X | 18805641..18805751 | 13..124 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:53:35 Download gff for
BS06772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18685179..18685277 | 661..759 | 100 | -> | Minus |
arm_X | 18685334..18685492 | 502..660 | 100 | -> | Minus |
arm_X | 18687792..18687880 | 413..501 | 100 | -> | Minus |
arm_X | 18684873..18684926 | 884..937 | 100 | -> | Minus |
arm_X | 18684991..18685114 | 760..883 | 100 | -> | Minus |
arm_X | 18699327..18699614 | 125..412 | 100 | -> | Minus |
arm_X | 18699674..18699784 | 13..124 | 98 | | Minus |
BS06772.5prime Sequence
944 bp (821 high quality bases) assembled on 2005-12-04
> BS06772.5prime
GAAGTTATCAGTCGACATGGGCAACTCGCAACCGCGTAATGCAAGCAGAA
GCAGAAGGACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCA
GCCAGCGATCACCACTACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCA
GCAGCAACAACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGT
TCCAGGCCCACACCAACCAGCCAACACAGTCGCATCCTCCGGGCGACGAG
GAACAGCCTGTACAATCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGG
CAGCCTTAGCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACT
CATTTCGTCATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCACTTCAT
GGCTCTCGTCGTGGCAAGACTCAGTGGCACCGACCTCTGACCAACTCAAT
CTTCAACTCGCACTTTAAGGAGACCAGCAAGAACGATCTGTACCGTATCG
ATCATTTGGTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGC
AAGAGTGACATTAGTCAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAA
GCTCATCGAAGACAACAGTGTACGGCAGATAAAGGACGAGGCGGACATTC
AGAAGGTTTGCGGCCATCATCCGTTTATCGTGAAGCAAATAGATCTGTGG
CAAAACCGCCACAACCTCCATATTCTATCGGAGTACGTACCCAACGGCGA
GTTGTTCTCAAAAATAACTCACTTCTCCATTGATCTGGTTCGTTTATACA
TTGGCGAGATAGCACTTGCCTTGGATTTTCTCCCACACGCTGGGATTATA
TATCGTGATGCGAAGCCGGAGAACATCCTGCTAACTGAACAGTTTCACAT
AAAGCTAACCGACTTCGGCCTTAGCAAGTGGCTCAAACTTGGGG
BS06772.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7001-PA | 1452 | Pk17E-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
CG7001-PA | 1452 | Pk17E-RA | 821..923 | 837..939 | 515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-RA | 2129 | CG7001-RA | 369..1296 | 17..944 | 4580 | 99.7 | Plus |
Pk17E-RC | 2123 | CG7001-RC | 369..1290 | 17..944 | 4480 | 99 | Plus |
Pk17E-RB | 1651 | CG7001-RB | 145..818 | 271..944 | 3310 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18788832..18789089 | 17..274 | 1290 | 100 | Plus |
X | 23542271 | X | 18790675..18790893 | 383..601 | 1095 | 100 | Plus |
X | 23542271 | X | 18790956..18791081 | 600..725 | 630 | 100 | Plus |
X | 23542271 | X | 18790503..18790615 | 272..384 | 565 | 100 | Plus |
X | 23542271 | X | 18791300..18791420 | 824..944 | 545 | 96.7 | Plus |
X | 23542271 | X | 18791146..18791244 | 726..824 | 495 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 147..304 | 202 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6996 | 70..279 | 198 | 60.6 | Plus |
BS06772.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:40 Download gff for
BS06772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-PA | 1..927 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:24 Download gff for
BS06772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7001-PA | 1..927 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:43:22 Download gff for
BS06772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 369..1295 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:16 Download gff for
BS06772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 369..1295 | 17..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:16 Download gff for
BS06772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18790506..18790615 | 275..384 | 100 | -> | Plus |
X | 18791301..18791419 | 825..944 | 97 | | Plus |
X | 18790677..18790893 | 385..601 | 100 | -> | Plus |
X | 18790958..18791081 | 602..725 | 100 | -> | Plus |
X | 18791146..18791244 | 726..824 | 100 | -> | Plus |
X | 18788832..18789089 | 17..274 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:43:22 Download gff for
BS06772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18682865..18683122 | 17..274 | 100 | -> | Plus |
arm_X | 18684539..18684648 | 275..384 | 100 | -> | Plus |
arm_X | 18684710..18684926 | 385..601 | 100 | -> | Plus |
arm_X | 18684991..18685114 | 602..725 | 100 | -> | Plus |
arm_X | 18685179..18685277 | 726..824 | 100 | -> | Plus |
arm_X | 18685334..18685452 | 825..944 | 97 | | Plus |
BS06772.complete Sequence
1484 bp (1484 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635614
> BS06772.complete
GAAGTTATCAGTCGACATGGGCAACTCGCAACCGCGTAATGCAAGCAGAA
GCAGAAGGACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCA
GCCAGCGATCACCACTACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCA
GCAGCAACAACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGT
TCCAGGCCCACACCAACCAGCCAACACAGTCGCATCCTCCGGGCGACGAG
GAACAGCCTGTACAATCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGG
CAGCCTTAGCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACT
CATTTCGTCATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCACTTCAT
GGCTCTCGTCGTGGCAAGACTCAGTGGCACCGACCTCTGACCAACTCAAT
CTTCAACTCGCACTTTAAGGAGACCAGCAAGAACGATCTGTACCGTATCG
ATCATTTGGTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGC
AAGAGTGACATTAGTCAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAA
GCTCATCGAAGACAACAGTGTACGGCAGATAAAGGACGAGGCGGACATTC
AGAAGGTTTGCGGCCATCATCCGTTTATCGTGAAGCAAATAGATCTGTGG
CAAAACCGCCACAACCTCCATATTCTATCGGAGTACGTACCCAACGGCGA
GTTGTTCTCAAAAATAACTCACTTCTCCATTGATCTGGTTCGTTTATACA
TTGGCGAGATAGCACTTGCCTTGGATTTTCTCCACAACGCTGGGATTATA
TATCGTGATGCGAAGCCGGAGAACATCCTGCTAACTGAACAGTTTCACAT
AAAGCTAACCGACTTCGGCCTTAGCAAGTGGCTCAAACTGGGGGCAAACA
CGCGCACCATGTGTGGCACTTTCAAATACATGGCCCCGGAGATTCTGTGC
GGGGAACCCTATGGCCATGCGGTGGACTGGTGGGCCTTGGGCGTTATTGC
CTGTCAGATGCTGACGCAGAAGTCGCCCAACATCAAACGCCACCTACTGC
GACGGCGTGAGAGCGTGGAGCCGGAGGACGGCCTGTCCAATGCCCCATCC
ATTGCTCAGATCAACGGCTGCCTGCAGGACAGTGACGGCGACAGCGAGGA
CTTCCTGCCGGAGGAGGTGCAGCACCTCACCCACGAGGGCAGGGATGTGC
TGCGCAAGCTGCTCACCATTGAGCCGCGCCAGCGTATCCGCAGTGTGATG
GCGCTCCAAAGGATTGCCATCTACAAGGACTATAACCTGAGCTCCAAGCA
GCTGCTAAGTCTCTCGCCTCGGGAGATTATAGCCAGGGATGGAATCCGTA
TCTACGAGGACAGGCATTTCGACCAGCTGACCAATCAGTGTGCCATCGAT
GCTTTCCTGGACTTCTAGAAGCTTTCTAGACCAT
BS06772.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-RA | 1452 | CG7001-PA | 1..1452 | 17..1468 | 7260 | 100 | Plus |
Pk17E-RC | 1446 | CG7001-PC | 1..1446 | 17..1468 | 7135 | 99.6 | Plus |
Pk17E-RB | 510 | CG7001-PB | 1..510 | 959..1468 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-RA | 2129 | CG7001-RA | 369..1820 | 17..1468 | 7260 | 100 | Plus |
Pk17E-RC | 2123 | CG7001-RC | 369..1814 | 17..1468 | 7135 | 99.6 | Plus |
Pk17E-RB | 1651 | CG7001-RB | 145..1342 | 271..1468 | 5990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18805292..18805581 | 1071..1360 | 1450 | 100 | Plus |
X | 23542271 | X | 18788832..18789089 | 17..274 | 1290 | 100 | Plus |
X | 23542271 | X | 18790675..18790893 | 383..601 | 1095 | 100 | Plus |
X | 23542271 | X | 18791300..18791459 | 824..983 | 800 | 100 | Plus |
X | 23542271 | X | 18790956..18791081 | 600..725 | 630 | 100 | Plus |
X | 23542271 | X | 18790503..18790615 | 272..384 | 565 | 100 | Plus |
X | 23542271 | X | 18805641..18805748 | 1361..1468 | 540 | 100 | Plus |
X | 23542271 | X | 18791146..18791244 | 726..824 | 495 | 100 | Plus |
X | 23542271 | X | 18793758..18793847 | 983..1072 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 147..304 | 202 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6996 | 70..279 | 198 | 60.6 | Plus |
BS06772.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:34 Download gff for
BS06772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 1..1452 | 17..1468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:42 Download gff for
BS06772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 367..1818 | 17..1468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:35 Download gff for
BS06772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 369..1820 | 17..1468 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:34 Download gff for
BS06772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 367..1821 | 17..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:17 Download gff for
BS06772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 369..1820 | 17..1468 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:17 Download gff for
BS06772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18790677..18790893 | 385..601 | 100 | -> | Plus |
X | 18791146..18791244 | 726..824 | 100 | -> | Plus |
X | 18790958..18791081 | 602..725 | 100 | -> | Plus |
X | 18791301..18791459 | 825..983 | 100 | -> | Plus |
X | 18793759..18793847 | 984..1072 | 100 | -> | Plus |
X | 18788832..18789089 | 17..274 | 100 | -> | Plus |
X | 18790506..18790615 | 275..384 | 100 | -> | Plus |
X | 18805294..18805581 | 1073..1360 | 100 | -> | Plus |
X | 18805641..18805748 | 1361..1468 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:35 Download gff for
BS06772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18684539..18684648 | 275..384 | 100 | -> | Plus |
arm_X | 18684710..18684926 | 385..601 | 100 | -> | Plus |
arm_X | 18684991..18685114 | 602..725 | 100 | -> | Plus |
arm_X | 18685179..18685277 | 726..824 | 100 | -> | Plus |
arm_X | 18682865..18683122 | 17..274 | 100 | -> | Plus |
arm_X | 18685334..18685492 | 825..983 | 100 | -> | Plus |
arm_X | 18687792..18687880 | 984..1072 | 100 | -> | Plus |
arm_X | 18699327..18699614 | 1073..1360 | 100 | -> | Plus |
arm_X | 18699674..18699781 | 1361..1468 | 100 | | Plus |
BS06772.pep Sequence
Translation from 16 to 1467
> BS06772.pep
MGNSQPRNASRSRRTSQWPQGAAELGASASDHHYHQEELYQEQQQQQQQP
QQEQPSSRRIQFQAHTNQPTQSHPPGDEEQPVQSQQQQLSTWSLGSLSGG
RLNWSFSGARNSFRHRNKATRKSLTSLHGSRRGKTQWHRPLTNSIFNSHF
KETSKNDLYRIDHLVAKGAFGVVFKVSSKSDISQCYALKVLKKSKLIEDN
SVRQIKDEADIQKVCGHHPFIVKQIDLWQNRHNLHILSEYVPNGELFSKI
THFSIDLVRLYIGEIALALDFLHNAGIIYRDAKPENILLTEQFHIKLTDF
GLSKWLKLGANTRTMCGTFKYMAPEILCGEPYGHAVDWWALGVIACQMLT
QKSPNIKRHLLRRRESVEPEDGLSNAPSIAQINGCLQDSDGDSEDFLPEE
VQHLTHEGRDVLRKLLTIEPRQRIRSVMALQRIAIYKDYNLSSKQLLSLS
PREIIARDGIRIYEDRHFDQLTNQCAIDAFLDF*
BS06772.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-PA | 483 | CG7001-PA | 1..483 | 1..483 | 2544 | 100 | Plus |
Pk17E-PC | 481 | CG7001-PC | 1..481 | 1..483 | 2521 | 99.6 | Plus |
Pk17E-PB | 169 | CG7001-PB | 1..169 | 315..483 | 889 | 100 | Plus |
S6k-PB | 490 | CG10539-PB | 77..324 | 159..426 | 387 | 36.7 | Plus |
S6k-PA | 490 | CG10539-PA | 77..324 | 159..426 | 387 | 36.7 | Plus |