Clone Sequence Records
BS06781.3prime Sequence
864 bp (771 high quality bases) assembled on 2005-12-04
> BS06781.3prime
ATGGTCTAGAAAGCTTCTAGTTGCGATTCAGCCAGAATATTGTCTTGAGA
ACGAAGTAGGCCAGGCCCAGACAGTAGACGATCTTCTCCCGCTGCGTGCG
CTGTTCATTGTTGATCTCGATGTTCAGCACCCGGCGATTCAGCTTGGCCA
GCTGGCGTCTCAGATACAGGATCTCCTCGTGGGGCGTCAGCTCGCCCATG
GGCGTGCCCTCTCGGTGCGCCAGCATTGAGGCATCCAGGTTGTTGTGCTG
CTGTTGATTCAGCTGCGAGCGCTTGCTGGCACTGCCTGTGGTCAACTGCG
AGTCCGATTCAACGGAATTGGTGTCATTGCCTTGAAATCCCATACGGGCG
ACTCCATTGGCACGCACATATTGGGTGGCATGGACCTCCTCATCGTCGGC
GTCCTCGTCGAGATCATTACCATACAAATGATGACCATTGGCCCGGATGG
GCGAGCTCTCCTCGGAGGCCGAGGGAAAGTGTTGATCGGTGAGGGTGATA
ATGCGCGGTGGCGTCTGGACGCGCACCAATCCGACCGATGGGTTCTTGGG
CAGAATGGAGTTCTCCAGCTGGATTTCCCGCGGAGCAGATCGCGTCTCCA
GATGCTGATTGTGGCCCAGGACCACAATTCGATCCGGTACATTCATGTCG
ATCTTGTCGTGATAGTTCCAGGAGCTGATCATCCCGTTCTGGTTGGACAG
CAGCAGATCCTCGTTGGAATACTCCCCGGTGGCCTTTATTCTTTTGGGAA
CCCGCATCTTGTCGTTAATCTCGTGGGCATATTTGGCGTCGCTGTAGAGA
TCATCGTCCAATCCATTGAACATGGGCGTCGGCGATTGCGGGGTCACCAT
GTCGACTGATAACT
BS06781.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30404-PA | 834 | CG30404-RA | 1..834 | 850..17 | 4170 | 100 | Minus |
| CG30404-PB | 834 | CG30404-RB | 1..834 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango11-RB | 1682 | CG30404-RB | 206..1045 | 855..16 | 4185 | 99.9 | Minus |
| Tango11-RA | 1629 | CG30404-RA | 153..992 | 855..16 | 4185 | 99.9 | Minus |
| Tango11-RC | 1007 | CG30404-RC | 90..370 | 296..16 | 1405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21719077..21719640 | 292..855 | 2790 | 99.6 | Plus |
| 2R | 25286936 | 2R | 21717417..21717699 | 16..298 | 1415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:48:49 has no hits.
BS06781.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:50 Download gff for
BS06781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30404-PA | 1..834 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:36 Download gff for
BS06781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30404-PB | 1..834 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:42:09 Download gff for
BS06781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RA | 147..1003 | 5..864 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:23 Download gff for
BS06781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RA | 147..1003 | 5..864 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:23 Download gff for
BS06781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21717406..21717696 | 5..295 | 98 | <- | Plus |
| 2R | 21719081..21719646 | 296..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:42:09 Download gff for
BS06781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17604911..17605201 | 5..295 | 98 | <- | Plus |
| arm_2R | 17606586..17607151 | 296..864 | 99 | | Plus |
BS06781.5prime Sequence
864 bp (801 high quality bases) assembled on 2005-12-04
> BS06781.5prime
GAAGTTATCAGTCGACATGGTGACCCCGCAATCGCCGACGCCCATGTTCA
ATGGATTGGACGATGATCTCTACAGCGACGCCAAATATGCCCACGAGATT
AACGACAAGATGCGGGTTCCCAAAAGAATAAAGGCCACCGGGGAGTATTC
CAACGAGGATCTGCTGCTGTCCAACCAGAACGGGATGATCAGCTCCTGGA
ACTATCACGACAAGATCGACATGAATGTACCGGATCGAATTGTGGTCCTG
GGCCACAATCAGCATCTGGAGACGCGATCTGCTCCGCGGGAAATCCAGCT
GGAGAACTCCATTCTGCCCAAGAACCCATCGGTCGGATTGGTGCGCGTCC
AGACGCCACCGCGCATTATCACCCTCACCGATCAACACTTTCCCTCGGCC
TCCGAGGAGAGCTCGCCCATCCGGGCCAATGGTCATCATTTGTATGGTAA
TGATCTCGACGAGGACGCCGACGATGAGGAGGTCCATGCCACCCAATATG
TGCGTGCCAATGGAGTCGCCCGTATGGGATTTCAAGGCAATGACACCAAT
TCCGTTGAATCGGACTCGCAGTTGACCACAGGCAGTGCCAGCAAGCGCTC
GCAGCTGAATCAACAGCAGCACAACAACCTGGATGCCTCAATGCTGGCGC
ACCGAGAGGGCACGCCCATGGGCGAGCTGACGCCCCACGAGGAGATCCTG
TATCTGAGACGCCAGCTGGCCAAGCTGAATCGCCGGGTGCTGAACATCGA
GATCAACAATGAACAGCGCACGCAGCGGGAGAAGATCGTCTACTGTCTGG
GCCTGGCCTACTTCGTTCTCAAGACAATATTCTGGCTGAATCGCAACTAG
AAGCTTTCTAGACC
BS06781.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30404-PA | 834 | CG30404-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
| CG30404-PB | 834 | CG30404-RB | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango11-RB | 1682 | CG30404-RB | 206..1045 | 12..851 | 4185 | 99.9 | Plus |
| Tango11-RA | 1629 | CG30404-RA | 153..992 | 12..851 | 4185 | 99.9 | Plus |
| Tango11-RC | 1007 | CG30404-RC | 90..370 | 571..851 | 1405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21719077..21719640 | 575..12 | 2790 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21717417..21717699 | 851..569 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:28:16 has no hits.
BS06781.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:51 Download gff for
BS06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30404-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:37 Download gff for
BS06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30404-PB | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:50:44 Download gff for
BS06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RA | 147..1003 | 3..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:36:47 Download gff for
BS06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RA | 147..1003 | 3..862 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:36:47 Download gff for
BS06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21717406..21717696 | 572..862 | 98 | <- | Minus |
| 2R | 21719081..21719646 | 3..571 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:50:44 Download gff for
BS06781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17604911..17605201 | 572..862 | 98 | <- | Minus |
| arm_2R | 17606586..17607151 | 3..571 | 99 | | Minus |
BS06781.complete Sequence
866 bp (866 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635615
> BS06781.complete
GAAGTTATCAGTCGACATGGTGACCCCGCAATCGCCGACGCCCATGTTCA
ATGGATTGGACGATGATCTCTACAGCGACGCCAAATATGCCCACGAGATT
AACGACAAGATGCGGGTTCCCAAAAGAATAAAGGCCACCGGGGAGTATTC
CAACGAGGATCTGCTGCTGTCCAACCAGAACGGGATGATCAGCTCCTGGA
ACTATCACGACAAGATCGACATGAATGTACCGGATCGAATTGTGGTCCTG
GGCCACAATCAGCATCTGGAGACGCGATCTGCTCCGCGGGAAATCCAGCT
GGAGAACTCCATTCTGCCCAAGAACCCATCGGTCGGATTGGTGCGCGTCC
AGACGCCACCGCGCATTATCACCCTCACCGATCAACACTTTCCCTCGGCC
TCCGAGGAGAGCTCGCCCATCCGGGCCAATGGTCATCATTTGTATGGTAA
TGATCTCGACGAGGACGCCGACGATGAGGAGGTCCATGCCACCCAATATG
TGCGTGCCAATGGAGTCGCCCGTATGGGATTTCAAGGCAATGACACCAAT
TCCGTTGAATCGGACTCGCAGTTGACCACAGGCAGTGCCAGCAAGCGCTC
GCAGCTGAATCAACAGCAGCACAACAACCTGGATGCCTCAATGCTGGCGC
ACCGAGAGGGCACGCCCATGGGCGAGCTGACGCCCCACGAGGAGATCCTG
TATCTGAGACGCCAGCTGGCCAAGCTGAATCGCCGGGTGCTGAACATCGA
GATCAACAATGAACAGCGCACGCAGCGGGAGAAGATCGTCTACTGTCTGG
GCCTGGCCTACTTCGTTCTCAAGACAATATTCTGGCTGAATCGCAACTAG
AAGCTTTCTAGACCAT
BS06781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango11-RB | 834 | CG30404-PB | 1..834 | 17..850 | 4170 | 100 | Plus |
| Tango11-RA | 834 | CG30404-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
| Tango11-RC | 282 | CG30404-PC | 3..282 | 571..850 | 1400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango11-RB | 1682 | CG30404-RB | 206..1045 | 12..851 | 4185 | 99.9 | Plus |
| Tango11-RA | 1629 | CG30404-RA | 153..992 | 12..851 | 4185 | 99.9 | Plus |
| Tango11-RC | 1007 | CG30404-RC | 90..370 | 571..851 | 1405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21719077..21719640 | 575..12 | 2790 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21717417..21717699 | 851..569 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:58:24 has no hits.
BS06781.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:35 Download gff for
BS06781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RB | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:01 Download gff for
BS06781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RB | 200..1056 | 3..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:55 Download gff for
BS06781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RA | 158..991 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:35 Download gff for
BS06781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RB | 200..1056 | 3..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:25 Download gff for
BS06781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango11-RA | 158..991 | 17..850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:25 Download gff for
BS06781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21717418..21717696 | 572..850 | 100 | <- | Minus |
| 2R | 21719081..21719635 | 17..571 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:55 Download gff for
BS06781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17604923..17605201 | 572..850 | 100 | <- | Minus |
| arm_2R | 17606586..17607140 | 17..571 | 100 | | Minus |
BS06781.pep Sequence
Translation from 16 to 849
> BS06781.pep
MVTPQSPTPMFNGLDDDLYSDAKYAHEINDKMRVPKRIKATGEYSNEDLL
LSNQNGMISSWNYHDKIDMNVPDRIVVLGHNQHLETRSAPREIQLENSIL
PKNPSVGLVRVQTPPRIITLTDQHFPSASEESSPIRANGHHLYGNDLDED
ADDEEVHATQYVRANGVARMGFQGNDTNSVESDSQLTTGSASKRSQLNQQ
QHNNLDASMLAHREGTPMGELTPHEEILYLRRQLAKLNRRVLNIEINNEQ
RTQREKIVYCLGLAYFVLKTIFWLNRN*
BS06781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango11-PB | 277 | CG30404-PB | 1..277 | 1..277 | 1449 | 100 | Plus |
| Tango11-PA | 277 | CG30404-PA | 1..277 | 1..277 | 1449 | 100 | Plus |
| Tango11-PC | 93 | CG30404-PC | 2..93 | 186..277 | 474 | 100 | Plus |
