Clone Sequence Records
BS06783.3prime Sequence
882 bp (789 high quality bases) assembled on 2005-12-04
> BS06783.3prime
ATGGTCTAGAAAGCTTTTAATCGATACTGATGACTGCCACGGGGTTCGAA
TCGTCCAGGCGGGAACGTTTGCACTTGGTTGGTCCCGCGGGTTCGTCGTC
AGACGACTCCAAAATCTCGGTGATATCCTCATCCTCGATTACTTCACATG
GCTTGCGCTTGGAGCCCGATTTTGGGGGACTCTGCACAGAGAGCTTGTCT
GTGGCCACGACAACAACATCTGCTTGGTCTTCGTCTTCCTCGATTACCAG
ACAGTCATCGTCATCTTCCTCAACCACTTCGTTGGGCCGGCTGCGCTTCG
AAGTGGAGGGTCCATCGTCCTTTGAGTCTCCTTCCCCGTTGGTAGAACGC
TTCTTAGCCGATTTCGGTTCATCCTCCTTGTCTTTCACGGCCTCCTTCTG
ATCCTCATCCTTTGGCTTCAGCTGTGAGGCATCTGCTACGACTTCGAACA
AGTTTTCATCGCGCTCCGCATCGAAGTGGGAAATGATAATACTCAACTCG
TAGTTCTGGAAGAAGTCGTCGCACTTGAGGATCACACCATCCACAATGTT
TAATTCGCTTAGGAGCTTGCCGTCATTGCATTCGGTCTCGCCCTCCTCTG
AGGAGATTAAAATGGAGCCATTGCTCTGCACAGTCACATCCGGATTCAAC
ATGTTGAGCGTCTTAACCAGGACCTCGTCACGCAGCTCCTTTATACGCAT
GCGCTTCGTATCGATCTTGAGAGTAATGGCCGGATCGCTGGCGCATACAT
GGCAATTGGGATTGGGGCCAGGAAGAGAAGCGTCCGGTACAAGGAAGTGA
TTTCGTGCATTTGGTCTAAGTCGGGCATAGACGGCCTTGCACTGCTCCCA
CTTGGCCTCCAGCACTTTGAAAGCCCGCATCA
BS06783.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7528-PA | 2103 | Uba2-RA | 1238..2103 | 882..17 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba2-RA | 2329 | CG7528-RA | 1352..2217 | 882..17 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8125439..8126304 | 17..882 | 4330 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:42:09 has no hits.
BS06783.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:54 Download gff for
BS06783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-PA | 1239..2103 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:41 Download gff for
BS06783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7528-PA | 1239..2103 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:26:24 Download gff for
BS06783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-RA | 1353..2217 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:15 Download gff for
BS06783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-RA | 1353..2217 | 17..881 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:15 Download gff for
BS06783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8125439..8126303 | 17..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:26:24 Download gff for
BS06783.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8118539..8119403 | 17..881 | 100 | | Plus |
BS06783.5prime Sequence
868 bp (813 high quality bases) assembled on 2005-12-04
> BS06783.5prime
GAAGTTATCAGTCGACATGGCAGCAGCTATCAATGGTGTTTTCCCACCCA
CATTGCAGGAGCTGGTAAAGAAGTCCAAGGTGCTGGTCGTGGGCGCCGGC
GGAATCGGCTGCGAGGTGCTCAAAAACCTTGTGCTTAGCGGCTTTACAGA
CATCGAAATTATCGATCTGGACACAATTGATCTTAGCAACTTGAACCGAC
AGTTCCTATTCCATCGCGAGCACGTTGGAAAATCTAAGGCACGGGTGGCT
AGGGAAAGCGCACTGAGCTTCAATCCGGACGCTAAGATAACCGCTTACCA
CGACAGTGTAACATCTACTGATTATGGCGTCAACTTCTTTAAGAAGTTCG
ATTTGGTGCTCAGCGCCTTGGACAACAGGGCCGCCAGGAATCATGTAAAT
CGCATGTGCCTCAATGCGGATGTCCCGCTGATCGAGAGCGGCACCGCCGG
CTACAATGGCCAGGTGGAACTGATCAAGCGTGGACTCACCCAGTGCTACG
AGTGCACTCCAAAAGACAAACAGCGAAGCTTCCCGGGCTGCACCATACGC
AATACGCCCTCCGAACCGATTCACTGCATTGTCTGGGCCAAGCATCTCTT
TAATCAACTGTTTGGTGAGTCCTTGGAAGATGAGGATATTTCTCCTGATG
CTGCTGATCCCGATGCAAAAGAAAAAGACGGCGGCGATGGAAATGGCGAG
CCCAAAGGCGATGGGAAGGAAAAAGGCGAAGAGTCAAAAGAGGAAAAGGA
GGCCAAGGAGGATACTGCCAACGGCAACATAATGCGCATTAATACTCGCC
AATGGGCCAAGGACTGNCACTATGATGCGGGCAAGCTGTTCAACAAGTTC
TTTAACGAGGACATTACC
BS06783.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7528-PA | 2103 | Uba2-RA | 1..852 | 17..868 | 4216 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba2-RA | 2329 | CG7528-RA | 115..966 | 17..868 | 4234 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8127011..8127298 | 603..316 | 1440 | 100 | Minus |
| 3L | 28110227 | 3L | 8126690..8126954 | 868..604 | 1299 | 99.2 | Minus |
| 3L | 28110227 | 3L | 8127352..8127506 | 315..161 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 8127561..8127704 | 160..17 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:28:35 has no hits.
BS06783.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:51:55 Download gff for
BS06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:44 Download gff for
BS06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7528-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:11:22 Download gff for
BS06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-RA | 108..966 | 8..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:24 Download gff for
BS06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-RA | 108..966 | 8..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:24 Download gff for
BS06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8127011..8127298 | 316..603 | 100 | <- | Minus |
| 3L | 8127352..8127506 | 161..315 | 100 | <- | Minus |
| 3L | 8127561..8127711 | 8..160 | 97 | | Minus |
| 3L | 8126690..8126954 | 604..868 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:11:22 Download gff for
BS06783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8119790..8120054 | 604..868 | 99 | <- | Minus |
| arm_3L | 8120111..8120398 | 316..603 | 100 | <- | Minus |
| arm_3L | 8120452..8120606 | 161..315 | 100 | <- | Minus |
| arm_3L | 8120661..8120811 | 8..160 | 97 | | Minus |
BS06783.complete Sequence
2135 bp assembled on 2008-08-14
GenBank Submission: FJ635616
> BS06783.complete
GAAGTTATCAGTCGACATGGCAGCAGCTATCAATGGTGTTTTCCCACCCA
CATTGCAGGAGCTGGTAAAGAAGTCCAAGGTGCTGGTCGTGGGCGCCGGC
GGAATCGGCTGCGAGGTGCTCAAAAACCTTGTGCTTAGCGGCTTTACAGA
CATCGAAATTATCGATCTGGACACAATTGATCTTAGCAACTTGAACCGAC
AGTTCCTATTCCATCGCGAGCACGTTGGAAAATCTAAGGCACGGGTGGCT
AGGGAAAGCGCACTGAGCTTCAATCCGGACGCTAAGATAACCGCTTACCA
CGACAGTGTAACATCTACTGATTATGGCGTCAACTTCTTTAAGAAGTTCG
ATTTGGTGCTCAGCGCCTTGGACAACAGGGCCGCCAGGAATCATGTAAAT
CGCATGTGCCTCAATGCGGATGTCCCGCTGATCGAGAGCGGCACCGCCGG
CTACAATGGCCAGGTGGAACTGATCAAGCGTGGACTCACCCAGTGCTACG
AGTGCACTCCAAAAGACAAACAGCGAAGCTTCCCGGGCTGCACCATACGC
AATACGCCCTCCGAACCGATTCACTGCATTGTCTGGGCCAAGCATCTCTT
TAATCAACTGTTTGGTGAGTCCTTGGAAGATGAGGATATTTCTCCTGATG
CTGCTGATCCCGATGCAAAAGAAAAAGACGGCGGCGATGGAAATGGCGAG
CCCAAAGGCGATGGGAAGGAAAAAGGCGAAGAGTCAAAAGAGGAAAAGGA
GGCCAAGGAGGATACTGCCAACGGCAACATAATGCGCATTAATACTCGCC
AATGGGCCAAGGACTGCAACTATGATGCGGGCAAGCTGTTCAACAAGTTC
TTTAACGAGGACATTACCTATTTGTTGCGTATGTCGAATTTGTGGAAGAC
CCGCAAGGCACCCGTGCCCGTGCAGTGGGATACCCTGCTGCCCGAAGGAT
CCTCCGGTGATCAGAAGGATGTGGCCAAGCAGCATCACAAGGTGTGGTCC
ATCGAGGAGTGCGCTCAGGTCTTTGCCAATTCATTAAAAGAGTTGAGCGC
TAACTTCCTGAAACTCGAAGGCGACGATACTCTGGCTTGGGACAAGGACG
ACCAGCCAGCCATGGATTTCGTGGCGGCCTGCGCCAACGTGCGATCCCAC
ATTTTCGACATTGAGCGAAAGTCAAGGTTCGAGATTAAGTCAATGGCGGG
AAACATTATTCCTGCTATTGCCACCACAAATGCGATTACGGCGGGAATTT
CCGTGATGCGGGCTTTCAAAGTGCTGGAGGCCAAGTGGGAGCAGTGCAAG
GCCGTCTATGCCCGACTTAGACCAAATGCACGAAATCACTTCCTTGTACC
GGACGCTTCTCTTCCTGGCCCCAATCCCAATTGCCATGTATGCGCCAGCG
ATCCGGCCATTACTCTCAAGATCGATACGAAGCGCATGCGTATAAAGGAG
CTGCGTGACGAGGTCCTGGTTAAGACGCTCAACATGTTGAATCCGGATGT
GACTGTGCAGAGCAATGGCTCCATTTTAATCTCCTCAGAGGAGGGCGAGA
CCGAATGCAATGACGGCAAGCTCCTAAGCGAATTAAACATTGTGGATGGT
GTGATCCTCAAGTGCGACGACTTCTTCCAGAACTACGAGTTGAGTATTAT
CATTTCCCACTTCGATGCGGAGCGCGATGAAAACTTGTTCGAAGTCGTAG
CAGATGCCTCACAGCTGAAGCCAAAGGATGAGGATCAGAAGGAGGCCGTG
AAAGACAAGGAGGATGAACCGAAATCGGCTAAGAAGCGTTCTACCAACGG
GGAAGGAGACTCAAAGGACGATGGACCCTCCACTTCGAAGCGCAGCCGGC
CCAACGAAGTGGTTGAGGAAGATGACGATGACTGTCTGGTAATCGAGGAA
GACGAAGACCAAGCAGATGTTGTTGTCGTGGCCACAGACAAGCTCTCTGT
GCAGAGTCCCCCAAAATCGGGCTCCAAGCGCAAGCCATGTGAAGTAATCG
AGGATGAGGATATCACCGAGATTTTGGAGTCGTCTGACGACGAACCCGCG
GGACCAACCAAGTGCAAACGTTCCCGCCTGGACGATTCGAACCCCGTGGC
AGTCATCAGTATCGATTAAAAGCTTTCTAGACCAT
BS06783.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba2-RA | 2103 | CG7528-PA | 1..2103 | 17..2119 | 10515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba2-RA | 2329 | CG7528-RA | 115..2217 | 17..2119 | 10515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8125439..8126954 | 2119..604 | 7580 | 100 | Minus |
| 3L | 28110227 | 3L | 8127011..8127298 | 603..316 | 1440 | 100 | Minus |
| 3L | 28110227 | 3L | 8127352..8127506 | 315..161 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 8127561..8127704 | 160..17 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:46:45 has no hits.
BS06783.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:43 Download gff for
BS06783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-RA | 109..2218 | 8..2119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:08 Download gff for
BS06783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-RA | 115..2215 | 17..2117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:44 Download gff for
BS06783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-RA | 116..2216 | 17..2117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:21 Download gff for
BS06783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba2-RA | 115..2215 | 17..2117 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:21 Download gff for
BS06783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8127561..8127704 | 17..160 | 100 | | Minus |
| 3L | 8125441..8126954 | 604..2117 | 100 | <- | Minus |
| 3L | 8127011..8127298 | 316..603 | 100 | <- | Minus |
| 3L | 8127352..8127506 | 161..315 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:08 Download gff for
BS06783.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8118541..8120054 | 604..2117 | 100 | <- | Minus |
| arm_3L | 8120111..8120398 | 316..603 | 100 | <- | Minus |
| arm_3L | 8120452..8120606 | 161..315 | 100 | <- | Minus |
| arm_3L | 8120661..8120804 | 17..160 | 100 | | Minus |
BS06783.pep Sequence
Translation from 16 to 2118
> BS06783.pep
MAAAINGVFPPTLQELVKKSKVLVVGAGGIGCEVLKNLVLSGFTDIEIID
LDTIDLSNLNRQFLFHREHVGKSKARVARESALSFNPDAKITAYHDSVTS
TDYGVNFFKKFDLVLSALDNRAARNHVNRMCLNADVPLIESGTAGYNGQV
ELIKRGLTQCYECTPKDKQRSFPGCTIRNTPSEPIHCIVWAKHLFNQLFG
ESLEDEDISPDAADPDAKEKDGGDGNGEPKGDGKEKGEESKEEKEAKEDT
ANGNIMRINTRQWAKDCNYDAGKLFNKFFNEDITYLLRMSNLWKTRKAPV
PVQWDTLLPEGSSGDQKDVAKQHHKVWSIEECAQVFANSLKELSANFLKL
EGDDTLAWDKDDQPAMDFVAACANVRSHIFDIERKSRFEIKSMAGNIIPA
IATTNAITAGISVMRAFKVLEAKWEQCKAVYARLRPNARNHFLVPDASLP
GPNPNCHVCASDPAITLKIDTKRMRIKELRDEVLVKTLNMLNPDVTVQSN
GSILISSEEGETECNDGKLLSELNIVDGVILKCDDFFQNYELSIIISHFD
AERDENLFEVVADASQLKPKDEDQKEAVKDKEDEPKSAKKRSTNGEGDSK
DDGPSTSKRSRPNEVVEEDDDDCLVIEEDEDQADVVVVATDKLSVQSPPK
SGSKRKPCEVIEDEDITEILESSDDEPAGPTKCKRSRLDDSNPVAVISID
*
BS06783.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba2-PA | 700 | CG7528-PA | 1..700 | 1..700 | 3652 | 100 | Plus |
| Uba3-PA | 450 | CG13343-PA | 42..252 | 13..207 | 369 | 39.4 | Plus |
| Uba1-PC | 1008 | CG1782-PC | 410..627 | 8..220 | 350 | 37.3 | Plus |
| Uba1-PA | 1191 | CG1782-PA | 593..810 | 8..220 | 350 | 37.3 | Plus |
| CG13090-PC | 453 | CG13090-PC | 89..234 | 17..163 | 204 | 29.9 | Plus |
