Clone Sequence Records
BS06787.3prime Sequence
900 bp (749 high quality bases) assembled on 2005-12-04
> BS06787.3prime
ATGGTCTAGAAAGCTTTTAATATGGTCTCGAGCGCATGCCTCCATCGTTT
CTCATCGGTCCACCATCGCGGCGATTGCCGCCACCACCTCCACGGCCACC
GCGTCCTCCGCCATTGTTGTCATTGAAGCGGGAGTAGCCACCACCACCGC
CGCCGCCGCCTCCGCCTCCCTGCGAGTTGCCACCGCGATCTCTGTTGTGA
TATCCACCGCCGCCGGATCCACGATCATTTCCTCGGTCGTAGCCTCCTCC
GCCACCACCGCCGCCGTAGCCGCCGCCTCCACCACCTCCGCTAGAGCCCT
CGTCGTCGCCCTTGGGAGTCTTACATCTATTGCATTCGTTGCGCCAGGCA
AAGTTGGTGTTATTACAGCTGTTGCATTTCCAGTCACCATCACGGGGCTG
CACGTTGCCACCGCCGCCGCCACCACCACCGCCTCCTCCGCGATCGTAGC
GTCCGCCGCCACCGCCTCCTCCGCGATCGAAGCGACCTCCACCGCCGCCG
CCACCTCCTCCGCCGCCACCACCACCGCGACGTCCGCCAAATCCTCCGCG
ACCACCACCACCGCCGCCGCCGCCTCCGCCCTTGTTCCAGTTGTTCTGGC
GCTGGGCCAGCGACACCTTGATCGCATTGCCGTTGAAGTCGCGTCCATCG
AACCATTCAATGGCGGATTGTGCAGCATTGGTGTCGTCGTAGGTGACAGT
GGCCTCTCCCTTGGAGGCGCCGGTCTCCTTGTTCTTGTACAGCCAAATCT
TGGGCTTCATTGTACGCTTGTCTTTCTTGATGATGCCAATTGCTCCAAAG
TGTGTCTCAATGTCCTGCTCGGTGGTCGAGGGATCCATGCCGGAGACAAA
GATGGTGTCCTCCTGGGTGATCATGTCGTTGCCACCGGACCCACGCCGCC
BS06787.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3606-PB | 1200 | caz-RB | 323..1200 | 894..17 | 4390 | 100 | Minus |
CG3606-PA | 1200 | caz-RA | 446..1200 | 771..17 | 3775 | 100 | Minus |
CG3606-PA | 1200 | caz-RA | 323..441 | 894..776 | 595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caz-RE | 1631 | CG3606-RE | 422..1306 | 900..17 | 4400 | 99.9 | Minus |
caz-RD | 1534 | CG3606-RD | 325..1209 | 900..17 | 4400 | 99.9 | Minus |
caz-RC | 1621 | CG3606-RC | 412..1296 | 900..17 | 4400 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16292193..16292643 | 777..327 | 2255 | 100 | Minus |
X | 23542271 | X | 16292884..16293195 | 328..17 | 1560 | 100 | Minus |
X | 23542271 | X | 16291992..16292110 | 894..776 | 595 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 01:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 622..728 | 813..701 | 119 | 59.3 | Minus |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 9139..9245 | 813..701 | 119 | 59.3 | Minus |
BS06787.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:03 Download gff for
BS06787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-PB | 316..1200 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:54 Download gff for
BS06787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3606-PB | 316..1200 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:53:26 Download gff for
BS06787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-RC | 412..1298 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:46 Download gff for
BS06787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-RC | 412..1298 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:46 Download gff for
BS06787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16292195..16292643 | 327..775 | 100 | -> | Minus |
X | 16291985..16292110 | 776..900 | 99 | -> | Minus |
X | 16292886..16293197 | 13..326 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:53:26 Download gff for
BS06787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16186018..16186143 | 776..900 | 99 | -> | Minus |
arm_X | 16186228..16186676 | 327..775 | 100 | -> | Minus |
arm_X | 16186919..16187230 | 13..326 | 99 | | Minus |
BS06787.5prime Sequence
952 bp (722 high quality bases) assembled on 2005-12-04
> BS06787.5prime
GAAGTTATCAGTCGACATGGAACGTGGCGGTTATGGTGGTGGTTCGGGAC
AGGGATATAATAATTTCGCTGTCCCCCCACCAAATTACCAGCAAATGCCA
AATAAAACGGGTAACTACAACGAGCCACCTCCGAACTACGGCAAACAAGG
CGGTGGTTATGATTCCGGTTCCGGTCATCGTGGTTCTGGTGGCAGCGGCA
ACGGTGGCGGCGGCGGCGGATCATGGAACGACAGAGGAGGCAATTCCTAC
GGAAATGGAGGCGCCAGCAAGGACAGCTACAACAAAGGACACGGAGGATA
CTCGGGCGGCGGCGGTGGTGGTGGAGGAGGCGGCGGCGGTGGGTCCGGTG
GCAACGACATGATCACCCAGGAGGACACCATCTTTGTCTCCGGCATGGAT
CCCTCGACCACCGAGCAGGACATTGAGACACACTTTGGAGCAATTGGCAT
CATCAAGAAAGACAAGCGTACAATGAAGCCCAAGATTTGGCTGTACAAGA
ACAAGGAGACCGGCGCCTCCAAGGGAGAGGCCACTGTCACCTACGACGAC
ACCAATGCTGCACAATCCGCCATTGAATGGTTCGATGGACGCGACTTCAA
CGGCAATGCGATCAAGGTGTCGCTGGCCCAGCGCCAGAACAACTGGAACA
AGGGCGGAGGCGGCGGCGGCGGTGGTGGTGGTCGCGGAGGATTTGGCGGA
CGTCGCGGTGGTGGTGGCGGCGGAGGAGGTGGCGGCGGCGGTGGAGGTCG
CTTCGATCGCGGAGGAGGCGGTGGCGGCGGACGCTACGATCGCGGAGGAG
GCGGTGGTGGTGGCGGCGGCGGTGGCAACGTGCAGCCCCGTGATGGTGAC
TGGAAAATGCACAGCTGTAATAACACCAACTTTGCCTGGCGCAACGAATG
CAATAGATGTAAGACTCCAAAGGGCGACGACGAGGGCTCTAGCGGAGGTG
GT
BS06787.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3606-PB | 1200 | caz-RB | 1..840 | 17..856 | 4200 | 100 | Plus |
CG3606-PA | 1200 | caz-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
CG3606-PA | 1200 | caz-RA | 446..840 | 462..856 | 1975 | 100 | Plus |
CG3606-PB | 1200 | caz-RB | 845..936 | 861..952 | 435 | 98.9 | Plus |
CG3606-PA | 1200 | caz-RA | 845..936 | 861..952 | 435 | 98.9 | Plus |
CG3606-PB | 1200 | caz-RB | 1051..1079 | 653..681 | 145 | 100 | Plus |
CG3606-PA | 1200 | caz-RA | 1051..1079 | 653..681 | 145 | 100 | Plus |
CG1840-PA | 357 | CG1840-RA | 203..236 | 705..738 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caz-RB | 1666 | CG3606-RB | 140..1077 | 15..952 | 4630 | 99.7 | Plus |
caz-RC | 1621 | CG3606-RC | 235..1032 | 155..952 | 3930 | 99.6 | Plus |
caz-RD | 1534 | CG3606-RD | 149..945 | 156..952 | 3925 | 99.6 | Plus |
caz-RC | 1621 | CG3606-RC | 140..237 | 15..112 | 490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16292193..16292643 | 456..906 | 2195 | 99.1 | Plus |
X | 23542271 | X | 16291939..16292110 | 286..457 | 860 | 100 | Plus |
X | 23542271 | X | 16289027..16289160 | 24..157 | 670 | 100 | Plus |
X | 23542271 | X | 16289225..16289322 | 155..252 | 490 | 100 | Plus |
X | 23542271 | X | 16292884..16292931 | 905..952 | 225 | 97.9 | Plus |
X | 23542271 | X | 16291056..16291092 | 252..288 | 185 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 622..728 | 420..532 | 119 | 59.3 | Plus |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 9139..9245 | 420..532 | 119 | 59.3 | Plus |
BS06787.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:04 Download gff for
BS06787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-PB | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:56 Download gff for
BS06787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3606-PB | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:24 Download gff for
BS06787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-RB | 140..1077 | 15..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:04 Download gff for
BS06787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-RB | 140..1077 | 15..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:04 Download gff for
BS06787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16289027..16289158 | 24..155 | 100 | -> | Plus |
X | 16289226..16289322 | 156..252 | 100 | -> | Plus |
X | 16291057..16291091 | 253..287 | 100 | -> | Plus |
X | 16291941..16292110 | 288..457 | 100 | -> | Plus |
X | 16292195..16292643 | 458..906 | 99 | -> | Plus |
X | 16292886..16292931 | 907..952 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:24 Download gff for
BS06787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16183060..16183191 | 24..155 | 100 | -> | Plus |
arm_X | 16183259..16183355 | 156..252 | 100 | -> | Plus |
arm_X | 16185090..16185124 | 253..287 | 100 | -> | Plus |
arm_X | 16185974..16186143 | 288..457 | 100 | -> | Plus |
arm_X | 16186228..16186676 | 458..906 | 99 | -> | Plus |
arm_X | 16186919..16186964 | 907..952 | 97 | | Plus |
BS06787.complete Sequence
1232 bp (1232 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635617
> BS06787.complete
GAAGTTATCAGTCGACATGGAACGTGGCGGTTATGGTGGTGGTTCGGGAC
AGGGATATAATAATTTCGCTGTCCCCCCACCAAATTACCAGCAAATGCCA
AATAAAACGGGTAACTACAACGAGCCACCTCCGAACTACGGCAAACAAGG
CGGTGGTTATGATTCCGGTTCCGGTCATCGTGGTTCTGGTGGCAGCGGCA
ACGGTGGCGGCGGCGGCGGATCATGGAACGACAGAGGAGGCAATTCCTAC
GGAAATGGAGGCGCCAGCAAGGACAGCTACAACAAAGGACACGGAGGATA
CTCGGGCGGCGGCGGTGGTGGTGGAGGAGGCGGCGGCGGTGGGTCCGGTG
GCAACGACATGATCACCCAGGAGGACACCATCTTTGTCTCCGGCATGGAT
CCCTCGACCACCGAGCAGGACATTGAGACACACTTTGGAGCAATTGGCAT
CATCAAGAAAGACAAGCGTACAATGAAGCCCAAGATTTGGCTGTACAAGA
ACAAGGAGACCGGCGCCTCCAAGGGAGAGGCCACTGTCACCTACGACGAC
ACCAATGCTGCACAATCCGCCATTGAATGGTTCGATGGACGCGACTTCAA
CGGCAATGCGATCAAGGTGTCGCTGGCCCAGCGCCAGAACAACTGGAACA
AGGGCGGAGGCGGCGGCGGCGGTGGTGGTGGTCGCGGAGGATTTGGCGGA
CGTCGCGGTGGTGGTGGCGGCGGAGGAGGTGGCGGCGGCGGTGGAGGTCG
CTTCGATCGCGGAGGAGGCGGTGGCGGCGGACGCTACGATCGCGGAGGAG
GCGGTGGTGGTGGCGGCGGCGGTGGCAACGTGCAGCCCCGTGATGGTGAC
TGGAAATGCAACAGCTGTAATAACACCAACTTTGCCTGGCGCAACGAATG
CAATAGATGTAAGACTCCCAAGGGCGACGACGAGGGCTCTAGCGGAGGTG
GTGGAGGCGGCGGCTACGGCGGCGGTGGTGGCGGAGGAGGCTACGACCGA
GGAAATGATCGTGGATCCGGCGGCGGTGGATATCACAACAGAGATCGCGG
TGGCAACTCGCAGGGAGGCGGAGGCGGCGGCGGCGGTGGTGGTGGCTACT
CCCGCTTCAATGACAACAATGGCGGAGGACGCGGTGGCCGTGGAGGTGGT
GGCGGCAATCGCCGCGATGGTGGACCGATGAGAAACGATGGAGGCATGCG
CTCGAGACCATATTAAAAGCTTTCTAGACCAT
BS06787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caz-RB | 1200 | CG3606-PB | 1..1200 | 17..1216 | 6000 | 100 | Plus |
caz-RC | 1155 | CG3606-PC | 94..1155 | 155..1216 | 5310 | 100 | Plus |
caz-RD | 1068 | CG3606-PD | 8..1068 | 156..1216 | 5305 | 100 | Plus |
caz-RC | 1155 | CG3606-PC | 1..96 | 17..112 | 480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caz-RB | 1666 | CG3606-RB | 140..1341 | 15..1216 | 6010 | 100 | Plus |
caz-RC | 1621 | CG3606-RC | 235..1296 | 155..1216 | 5310 | 100 | Plus |
caz-RD | 1534 | CG3606-RD | 149..1209 | 156..1216 | 5305 | 100 | Plus |
caz-RC | 1621 | CG3606-RC | 140..237 | 15..112 | 490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16292193..16292643 | 456..906 | 2255 | 100 | Plus |
X | 23542271 | X | 16292884..16293195 | 905..1216 | 1560 | 100 | Plus |
X | 23542271 | X | 16291939..16292110 | 286..457 | 860 | 100 | Plus |
X | 23542271 | X | 16289027..16289160 | 24..157 | 670 | 100 | Plus |
X | 23542271 | X | 16289225..16289322 | 155..252 | 490 | 100 | Plus |
X | 23542271 | X | 16291056..16291092 | 252..288 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 622..728 | 420..532 | 119 | 59.3 | Plus |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 9139..9245 | 420..532 | 119 | 59.3 | Plus |
BS06787.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:37 Download gff for
BS06787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-RB | 1..1200 | 17..1216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:24 Download gff for
BS06787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-RB | 104..1307 | 15..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:28 Download gff for
BS06787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-RB | 142..1339 | 17..1214 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:37 Download gff for
BS06787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-RB | 104..1307 | 15..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:36 Download gff for
BS06787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caz-RB | 142..1339 | 17..1214 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:36 Download gff for
BS06787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16289027..16289158 | 24..155 | 100 | -> | Plus |
X | 16289226..16289322 | 156..252 | 100 | -> | Plus |
X | 16291057..16291091 | 253..287 | 100 | -> | Plus |
X | 16291941..16292110 | 288..457 | 100 | -> | Plus |
X | 16292195..16292643 | 458..906 | 100 | -> | Plus |
X | 16292886..16293193 | 907..1214 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:28 Download gff for
BS06787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16183060..16183191 | 24..155 | 100 | -> | Plus |
arm_X | 16183259..16183355 | 156..252 | 100 | -> | Plus |
arm_X | 16185090..16185124 | 253..287 | 100 | -> | Plus |
arm_X | 16185974..16186143 | 288..457 | 100 | -> | Plus |
arm_X | 16186228..16186676 | 458..906 | 100 | -> | Plus |
arm_X | 16186919..16187226 | 907..1214 | 100 | | Plus |
BS06787.pep Sequence
Translation from 16 to 1215
> BS06787.pep
MERGGYGGGSGQGYNNFAVPPPNYQQMPNKTGNYNEPPPNYGKQGGGYDS
GSGHRGSGGSGNGGGGGGSWNDRGGNSYGNGGASKDSYNKGHGGYSGGGG
GGGGGGGGGSGGNDMITQEDTIFVSGMDPSTTEQDIETHFGAIGIIKKDK
RTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIK
VSLAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGG
GGGGGRYDRGGGGGGGGGGGNVQPRDGDWKCNSCNNTNFAWRNECNRCKT
PKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGSGGGGYHNRDRGGNSQG
GGGGGGGGGGYSRFNDNNGGGRGGRGGGGGNRRDGGPMRNDGGMRSRPY*
BS06787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caz-PB | 399 | CG3606-PB | 1..399 | 1..399 | 2288 | 100 | Plus |
caz-PC | 384 | CG3606-PC | 1..384 | 1..399 | 2170 | 96.2 | Plus |
caz-PD | 355 | CG3606-PD | 4..355 | 48..399 | 2012 | 100 | Plus |
caz-PE | 124 | CG3606-PE | 1..79 | 1..79 | 463 | 100 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 38..440 | 39..393 | 455 | 36.1 | Plus |
caz-PD | 355 | CG3606-PD | 173..349 | 42..260 | 233 | 35.8 | Plus |
caz-PD | 355 | CG3606-PD | 214..337 | 2..113 | 178 | 41.9 | Plus |