Clone BS06787 Report

Search the DGRC for BS06787

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:87
Vector:pDNR-Dual
Associated Gene/Transcriptcaz-RB
Protein status:BS06787.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06787.3prime Sequence

900 bp (749 high quality bases) assembled on 2005-12-04

> BS06787.3prime
ATGGTCTAGAAAGCTTTTAATATGGTCTCGAGCGCATGCCTCCATCGTTT
CTCATCGGTCCACCATCGCGGCGATTGCCGCCACCACCTCCACGGCCACC
GCGTCCTCCGCCATTGTTGTCATTGAAGCGGGAGTAGCCACCACCACCGC
CGCCGCCGCCTCCGCCTCCCTGCGAGTTGCCACCGCGATCTCTGTTGTGA
TATCCACCGCCGCCGGATCCACGATCATTTCCTCGGTCGTAGCCTCCTCC
GCCACCACCGCCGCCGTAGCCGCCGCCTCCACCACCTCCGCTAGAGCCCT
CGTCGTCGCCCTTGGGAGTCTTACATCTATTGCATTCGTTGCGCCAGGCA
AAGTTGGTGTTATTACAGCTGTTGCATTTCCAGTCACCATCACGGGGCTG
CACGTTGCCACCGCCGCCGCCACCACCACCGCCTCCTCCGCGATCGTAGC
GTCCGCCGCCACCGCCTCCTCCGCGATCGAAGCGACCTCCACCGCCGCCG
CCACCTCCTCCGCCGCCACCACCACCGCGACGTCCGCCAAATCCTCCGCG
ACCACCACCACCGCCGCCGCCGCCTCCGCCCTTGTTCCAGTTGTTCTGGC
GCTGGGCCAGCGACACCTTGATCGCATTGCCGTTGAAGTCGCGTCCATCG
AACCATTCAATGGCGGATTGTGCAGCATTGGTGTCGTCGTAGGTGACAGT
GGCCTCTCCCTTGGAGGCGCCGGTCTCCTTGTTCTTGTACAGCCAAATCT
TGGGCTTCATTGTACGCTTGTCTTTCTTGATGATGCCAATTGCTCCAAAG
TGTGTCTCAATGTCCTGCTCGGTGGTCGAGGGATCCATGCCGGAGACAAA
GATGGTGTCCTCCTGGGTGATCATGTCGTTGCCACCGGACCCACGCCGCC

BS06787.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3606-PB 1200 caz-RB 323..1200 894..17 4390 100 Minus
CG3606-PA 1200 caz-RA 446..1200 771..17 3775 100 Minus
CG3606-PA 1200 caz-RA 323..441 894..776 595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
caz-RE 1631 CG3606-RE 422..1306 900..17 4400 99.9 Minus
caz-RD 1534 CG3606-RD 325..1209 900..17 4400 99.9 Minus
caz-RC 1621 CG3606-RC 412..1296 900..17 4400 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16292193..16292643 777..327 2255 100 Minus
X 23542271 X 16292884..16293195 328..17 1560 100 Minus
X 23542271 X 16291992..16292110 894..776 595 100 Minus
Blast to na_te.dros performed 2015-02-09 01:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 622..728 813..701 119 59.3 Minus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 9139..9245 813..701 119 59.3 Minus

BS06787.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:03 Download gff for BS06787.3prime
Subject Subject Range Query Range Percent Splice Strand
caz-PB 316..1200 17..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:54 Download gff for BS06787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3606-PB 316..1200 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:53:26 Download gff for BS06787.3prime
Subject Subject Range Query Range Percent Splice Strand
caz-RC 412..1298 13..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:07:46 Download gff for BS06787.3prime
Subject Subject Range Query Range Percent Splice Strand
caz-RC 412..1298 13..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:07:46 Download gff for BS06787.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16292195..16292643 327..775 100 -> Minus
X 16291985..16292110 776..900 99 -> Minus
X 16292886..16293197 13..326 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:53:26 Download gff for BS06787.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16186018..16186143 776..900 99 -> Minus
arm_X 16186228..16186676 327..775 100 -> Minus
arm_X 16186919..16187230 13..326 99   Minus

BS06787.5prime Sequence

952 bp (722 high quality bases) assembled on 2005-12-04

> BS06787.5prime
GAAGTTATCAGTCGACATGGAACGTGGCGGTTATGGTGGTGGTTCGGGAC
AGGGATATAATAATTTCGCTGTCCCCCCACCAAATTACCAGCAAATGCCA
AATAAAACGGGTAACTACAACGAGCCACCTCCGAACTACGGCAAACAAGG
CGGTGGTTATGATTCCGGTTCCGGTCATCGTGGTTCTGGTGGCAGCGGCA
ACGGTGGCGGCGGCGGCGGATCATGGAACGACAGAGGAGGCAATTCCTAC
GGAAATGGAGGCGCCAGCAAGGACAGCTACAACAAAGGACACGGAGGATA
CTCGGGCGGCGGCGGTGGTGGTGGAGGAGGCGGCGGCGGTGGGTCCGGTG
GCAACGACATGATCACCCAGGAGGACACCATCTTTGTCTCCGGCATGGAT
CCCTCGACCACCGAGCAGGACATTGAGACACACTTTGGAGCAATTGGCAT
CATCAAGAAAGACAAGCGTACAATGAAGCCCAAGATTTGGCTGTACAAGA
ACAAGGAGACCGGCGCCTCCAAGGGAGAGGCCACTGTCACCTACGACGAC
ACCAATGCTGCACAATCCGCCATTGAATGGTTCGATGGACGCGACTTCAA
CGGCAATGCGATCAAGGTGTCGCTGGCCCAGCGCCAGAACAACTGGAACA
AGGGCGGAGGCGGCGGCGGCGGTGGTGGTGGTCGCGGAGGATTTGGCGGA
CGTCGCGGTGGTGGTGGCGGCGGAGGAGGTGGCGGCGGCGGTGGAGGTCG
CTTCGATCGCGGAGGAGGCGGTGGCGGCGGACGCTACGATCGCGGAGGAG
GCGGTGGTGGTGGCGGCGGCGGTGGCAACGTGCAGCCCCGTGATGGTGAC
TGGAAAATGCACAGCTGTAATAACACCAACTTTGCCTGGCGCAACGAATG
CAATAGATGTAAGACTCCAAAGGGCGACGACGAGGGCTCTAGCGGAGGTG
GT

BS06787.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3606-PB 1200 caz-RB 1..840 17..856 4200 100 Plus
CG3606-PA 1200 caz-RA 1..441 17..457 2205 100 Plus
CG3606-PA 1200 caz-RA 446..840 462..856 1975 100 Plus
CG3606-PB 1200 caz-RB 845..936 861..952 435 98.9 Plus
CG3606-PA 1200 caz-RA 845..936 861..952 435 98.9 Plus
CG3606-PB 1200 caz-RB 1051..1079 653..681 145 100 Plus
CG3606-PA 1200 caz-RA 1051..1079 653..681 145 100 Plus
CG1840-PA 357 CG1840-RA 203..236 705..738 145 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
caz-RB 1666 CG3606-RB 140..1077 15..952 4630 99.7 Plus
caz-RC 1621 CG3606-RC 235..1032 155..952 3930 99.6 Plus
caz-RD 1534 CG3606-RD 149..945 156..952 3925 99.6 Plus
caz-RC 1621 CG3606-RC 140..237 15..112 490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16292193..16292643 456..906 2195 99.1 Plus
X 23542271 X 16291939..16292110 286..457 860 100 Plus
X 23542271 X 16289027..16289160 24..157 670 100 Plus
X 23542271 X 16289225..16289322 155..252 490 100 Plus
X 23542271 X 16292884..16292931 905..952 225 97.9 Plus
X 23542271 X 16291056..16291092 252..288 185 100 Plus
Blast to na_te.dros performed 2015-02-10 21:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 622..728 420..532 119 59.3 Plus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 9139..9245 420..532 119 59.3 Plus

BS06787.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:04 Download gff for BS06787.5prime
Subject Subject Range Query Range Percent Splice Strand
caz-PB 1..936 17..952 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:56 Download gff for BS06787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3606-PB 1..936 17..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:24 Download gff for BS06787.5prime
Subject Subject Range Query Range Percent Splice Strand
caz-RB 140..1077 15..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:04 Download gff for BS06787.5prime
Subject Subject Range Query Range Percent Splice Strand
caz-RB 140..1077 15..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:04 Download gff for BS06787.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16289027..16289158 24..155 100 -> Plus
X 16289226..16289322 156..252 100 -> Plus
X 16291057..16291091 253..287 100 -> Plus
X 16291941..16292110 288..457 100 -> Plus
X 16292195..16292643 458..906 99 -> Plus
X 16292886..16292931 907..952 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:24 Download gff for BS06787.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16183060..16183191 24..155 100 -> Plus
arm_X 16183259..16183355 156..252 100 -> Plus
arm_X 16185090..16185124 253..287 100 -> Plus
arm_X 16185974..16186143 288..457 100 -> Plus
arm_X 16186228..16186676 458..906 99 -> Plus
arm_X 16186919..16186964 907..952 97   Plus

BS06787.complete Sequence

1232 bp (1232 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635617

> BS06787.complete
GAAGTTATCAGTCGACATGGAACGTGGCGGTTATGGTGGTGGTTCGGGAC
AGGGATATAATAATTTCGCTGTCCCCCCACCAAATTACCAGCAAATGCCA
AATAAAACGGGTAACTACAACGAGCCACCTCCGAACTACGGCAAACAAGG
CGGTGGTTATGATTCCGGTTCCGGTCATCGTGGTTCTGGTGGCAGCGGCA
ACGGTGGCGGCGGCGGCGGATCATGGAACGACAGAGGAGGCAATTCCTAC
GGAAATGGAGGCGCCAGCAAGGACAGCTACAACAAAGGACACGGAGGATA
CTCGGGCGGCGGCGGTGGTGGTGGAGGAGGCGGCGGCGGTGGGTCCGGTG
GCAACGACATGATCACCCAGGAGGACACCATCTTTGTCTCCGGCATGGAT
CCCTCGACCACCGAGCAGGACATTGAGACACACTTTGGAGCAATTGGCAT
CATCAAGAAAGACAAGCGTACAATGAAGCCCAAGATTTGGCTGTACAAGA
ACAAGGAGACCGGCGCCTCCAAGGGAGAGGCCACTGTCACCTACGACGAC
ACCAATGCTGCACAATCCGCCATTGAATGGTTCGATGGACGCGACTTCAA
CGGCAATGCGATCAAGGTGTCGCTGGCCCAGCGCCAGAACAACTGGAACA
AGGGCGGAGGCGGCGGCGGCGGTGGTGGTGGTCGCGGAGGATTTGGCGGA
CGTCGCGGTGGTGGTGGCGGCGGAGGAGGTGGCGGCGGCGGTGGAGGTCG
CTTCGATCGCGGAGGAGGCGGTGGCGGCGGACGCTACGATCGCGGAGGAG
GCGGTGGTGGTGGCGGCGGCGGTGGCAACGTGCAGCCCCGTGATGGTGAC
TGGAAATGCAACAGCTGTAATAACACCAACTTTGCCTGGCGCAACGAATG
CAATAGATGTAAGACTCCCAAGGGCGACGACGAGGGCTCTAGCGGAGGTG
GTGGAGGCGGCGGCTACGGCGGCGGTGGTGGCGGAGGAGGCTACGACCGA
GGAAATGATCGTGGATCCGGCGGCGGTGGATATCACAACAGAGATCGCGG
TGGCAACTCGCAGGGAGGCGGAGGCGGCGGCGGCGGTGGTGGTGGCTACT
CCCGCTTCAATGACAACAATGGCGGAGGACGCGGTGGCCGTGGAGGTGGT
GGCGGCAATCGCCGCGATGGTGGACCGATGAGAAACGATGGAGGCATGCG
CTCGAGACCATATTAAAAGCTTTCTAGACCAT

BS06787.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
caz-RB 1200 CG3606-PB 1..1200 17..1216 6000 100 Plus
caz-RC 1155 CG3606-PC 94..1155 155..1216 5310 100 Plus
caz-RD 1068 CG3606-PD 8..1068 156..1216 5305 100 Plus
caz-RC 1155 CG3606-PC 1..96 17..112 480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
caz-RB 1666 CG3606-RB 140..1341 15..1216 6010 100 Plus
caz-RC 1621 CG3606-RC 235..1296 155..1216 5310 100 Plus
caz-RD 1534 CG3606-RD 149..1209 156..1216 5305 100 Plus
caz-RC 1621 CG3606-RC 140..237 15..112 490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16292193..16292643 456..906 2255 100 Plus
X 23542271 X 16292884..16293195 905..1216 1560 100 Plus
X 23542271 X 16291939..16292110 286..457 860 100 Plus
X 23542271 X 16289027..16289160 24..157 670 100 Plus
X 23542271 X 16289225..16289322 155..252 490 100 Plus
X 23542271 X 16291056..16291092 252..288 185 100 Plus
Blast to na_te.dros performed 2014-11-27 14:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 622..728 420..532 119 59.3 Plus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 9139..9245 420..532 119 59.3 Plus

BS06787.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:37 Download gff for BS06787.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 1..1200 17..1216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:24 Download gff for BS06787.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 104..1307 15..1220 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:28 Download gff for BS06787.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 142..1339 17..1214 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:37 Download gff for BS06787.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 104..1307 15..1220 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:36 Download gff for BS06787.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 142..1339 17..1214 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:36 Download gff for BS06787.complete
Subject Subject Range Query Range Percent Splice Strand
X 16289027..16289158 24..155 100 -> Plus
X 16289226..16289322 156..252 100 -> Plus
X 16291057..16291091 253..287 100 -> Plus
X 16291941..16292110 288..457 100 -> Plus
X 16292195..16292643 458..906 100 -> Plus
X 16292886..16293193 907..1214 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:28 Download gff for BS06787.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16183060..16183191 24..155 100 -> Plus
arm_X 16183259..16183355 156..252 100 -> Plus
arm_X 16185090..16185124 253..287 100 -> Plus
arm_X 16185974..16186143 288..457 100 -> Plus
arm_X 16186228..16186676 458..906 100 -> Plus
arm_X 16186919..16187226 907..1214 100   Plus

BS06787.pep Sequence

Translation from 16 to 1215

> BS06787.pep
MERGGYGGGSGQGYNNFAVPPPNYQQMPNKTGNYNEPPPNYGKQGGGYDS
GSGHRGSGGSGNGGGGGGSWNDRGGNSYGNGGASKDSYNKGHGGYSGGGG
GGGGGGGGGSGGNDMITQEDTIFVSGMDPSTTEQDIETHFGAIGIIKKDK
RTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIK
VSLAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGG
GGGGGRYDRGGGGGGGGGGGNVQPRDGDWKCNSCNNTNFAWRNECNRCKT
PKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGSGGGGYHNRDRGGNSQG
GGGGGGGGGGYSRFNDNNGGGRGGRGGGGGNRRDGGPMRNDGGMRSRPY*

BS06787.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
caz-PB 399 CG3606-PB 1..399 1..399 2288 100 Plus
caz-PC 384 CG3606-PC 1..384 1..399 2170 96.2 Plus
caz-PD 355 CG3606-PD 4..355 48..399 2012 100 Plus
caz-PE 124 CG3606-PE 1..79 1..79 463 100 Plus
Cpr47Ef-PD 601 CG13214-PD 38..440 39..393 455 36.1 Plus
caz-PD 355 CG3606-PD 173..349 42..260 233 35.8 Plus
caz-PD 355 CG3606-PD 214..337 2..113 178 41.9 Plus