Clone Sequence Records
BS06788.3prime Sequence
850 bp (835 high quality bases) assembled on 2005-12-04
> BS06788.3prime
ATGGTCTAGAAAGCTTTCAAGCTGATCCGTTTATTGCCTGCTTCACATTC
GATGCGCTGACGAGCTTAAGGGCGCCAAGTATTCCGTTCAGGTTCTCCTC
GTTGTAGGGCTTGCCCTGGAGCGGAGTCACCACCGGGACGAGCTGATCGC
TCTGCGGCAGCTGGATGCCGATCTCCTTCATTAATCCCGCTTCCACTTCC
ACGCTTAGTTTCAGTTTCATGTCCTGCTCATCGCCCTTCACCTCCAGTTC
CTTCTGCACGGTGAACTTGGGAGTCTTGCCGATGACCCAGTCCCAAGAGC
TGTAGTTGGAGCGCAATTCCTCAATGCCGGGGAACCATTTCTCTGTGGGA
TTGACCAGCTGAAAGCCGCGCTGCTGCATCGTCTGTGTGCTGCCGCCGTC
TTCAAGCGTAGTTGCAGCCGTTCTCAAATACTCGTAACCCACGGCGGAAC
GCAGCTGAGCAACGTTCACCGTGCGATTGACATCAACCAGGTTGCGAATG
GGCGACGGCACCGAAGCCGTGGCCTTGCTAATATAATTGGCCGGCTCCCG
CACCAGAGATTCGCCCAAGTGCAATTTGTTGGCGCTGGCCAAAATGGTGC
AGTGATGGTACGAGTTCGGGTGTCCCAGCTTGGCCGCAGTGCCGGAAATC
TTCTTATTCATCACTACAATGTCGTCGCGCTCATTTATCTCTGCCTTGAT
GGCCCATTCGCGGAACAAGGCCCTGGTCACGATGTTCAGGTTGTACTTGC
GATCGTAGCGCTCTCTGGGCGAGAAAAAGGTGCAGTTGAGGTTCCCAAGA
TCATGGTACACCGCTCCACCGCCACTATTGCGGCGTGCAAGTGTTATGCC
BS06788.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8446-PA | 1191 | CG8446-RA | 358..1191 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-RB | 2010 | CG44243-RB | 799..1632 | 850..17 | 4170 | 100 | Minus |
CG44243-RA | 2131 | CG44243-RA | 1097..1930 | 850..17 | 4170 | 100 | Minus |
CG42837-RA | 2131 | CG42837-RA | 1097..1930 | 850..17 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16198483..16198947 | 651..187 | 2325 | 100 | Minus |
2R | 25286936 | 2R | 16198138..16198338 | 850..650 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 16199006..16199177 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:43:48 has no hits.
BS06788.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:05 Download gff for
BS06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-PA | 358..1191 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:57 Download gff for
BS06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-PA | 358..1191 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:05:53 Download gff for
BS06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44243-RA | 1097..1935 | 12..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:36:45 Download gff for
BS06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42837-RA | 1097..1935 | 12..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:36:45 Download gff for
BS06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16198138..16198338 | 650..850 | 100 | -> | Minus |
2R | 16198485..16198946 | 188..649 | 100 | -> | Minus |
2R | 16199007..16199182 | 12..187 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:05:53 Download gff for
BS06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12085643..12085843 | 650..850 | 100 | -> | Minus |
arm_2R | 12085990..12086451 | 188..649 | 100 | -> | Minus |
arm_2R | 12086512..12086687 | 12..187 | 98 | | Minus |
BS06788.5prime Sequence
872 bp (780 high quality bases) assembled on 2005-12-04
> BS06788.5prime
GAAGTTATCAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGC
TGCGGCTACTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGC
GGAGTGGAGCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCG
CCAGCCACCGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCA
TCTCGCAGTCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTG
TACAAAAACTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAA
CGACCCGTGCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTA
ATGTTTCGCAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGT
GGCGGTGGAGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTT
CTCGCCCAGAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCA
GGGCCTTGTTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGAC
GACATTGTAGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGG
ACACCCGAACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAAT
TGCACTTGGGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAG
GCCACGGCTTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCG
CACGGTGAACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGA
GAACGGCTGCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAG
CAGCGCGGCTTTCAGCTGGTCA
BS06788.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8446-PA | 1191 | CG8446-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-RB | 2010 | CG44243-RB | 441..1297 | 16..872 | 4285 | 100 | Plus |
CG44243-RA | 2131 | CG44243-RA | 739..1595 | 16..872 | 4285 | 100 | Plus |
CG42837-RA | 2131 | CG42837-RA | 739..1595 | 16..872 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16197780..16198338 | 16..574 | 2795 | 100 | Plus |
2R | 25286936 | 2R | 16198483..16198782 | 573..872 | 1500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:30:51 has no hits.
BS06788.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:06 Download gff for
BS06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:58 Download gff for
BS06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:15:04 Download gff for
BS06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44243-RA | 736..1594 | 10..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:43 Download gff for
BS06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42837-RA | 736..1594 | 10..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:43 Download gff for
BS06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16197777..16198338 | 10..574 | 99 | -> | Plus |
2R | 16198485..16198781 | 575..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:15:04 Download gff for
BS06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12085282..12085843 | 10..574 | 99 | -> | Plus |
arm_2R | 12085990..12086286 | 575..871 | 100 | | Plus |
BS06788.complete Sequence
1223 bp (1223 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635618
> BS06788.complete
GAAGTTATCAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGC
TGCGGCTACTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGC
GGAGTGGAGCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCG
CCAGCCACCGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCA
TCTCGCAGTCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTG
TACAAAAACTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAA
CGACCCGTGCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTA
ATGTTTCGCAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGT
GGCGGTGGAGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTT
CTCGCCCAGAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCA
GGGCCTTGTTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGAC
GACATTGTAGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGG
ACACCCGAACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAAT
TGCACTTGGGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAG
GCCACGGCTTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCG
CACGGTGAACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGA
GAACGGCTGCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAG
CAGCGCGGCTTTCAGCTGGTCAATCCCACAGAGAAATGGTTCCCCGGCAT
TGAGGAATTGCGCTCCAACTACAGCTCTTGGGACTGGGTCATCGGCAAGA
CTCCCAAGTTCACCGTGCAGAAGGAACTGGAGGTGAAGGGCGATGAGCAG
GACATGAAACTGAAACTAAGCGTGGAAGTGGAAGCGGGATTAATGAAGGA
GATCGGCATCCAGCTGCCGCAGAGCGATCAGCTCGTCCCGGTGGTGACTC
CGCTCCAGGGCAAGCCCTACAACGAGGAGAACCTGAACGGAATACTTGGC
GCCCTTAAGCTCGTCAGCGCATCGAATGTGAAGCAGGCAATAAACGGATC
AGCTTGAAAGCTTTCTAGACCAT
BS06788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-RB | 1191 | CG44243-PB | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG44243-RA | 1191 | CG44243-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-RB | 2010 | CG44243-RB | 441..1632 | 16..1207 | 5960 | 100 | Plus |
CG44243-RA | 2131 | CG44243-RA | 739..1930 | 16..1207 | 5960 | 100 | Plus |
CG42837-RA | 2131 | CG42837-RA | 739..1930 | 16..1207 | 5960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16197780..16198338 | 16..574 | 2795 | 100 | Plus |
2R | 25286936 | 2R | 16198483..16198947 | 573..1037 | 2325 | 100 | Plus |
2R | 25286936 | 2R | 16199006..16199177 | 1036..1207 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:46:33 has no hits.
BS06788.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:38 Download gff for
BS06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-RB | 1..1191 | 17..1207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:25 Download gff for
BS06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-RB | 240..1439 | 10..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:40 Download gff for
BS06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44243-RA | 740..1929 | 17..1206 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:38 Download gff for
BS06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-RB | 240..1439 | 10..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:35 Download gff for
BS06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42837-RA | 740..1929 | 17..1206 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:35 Download gff for
BS06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16197781..16198338 | 17..574 | 100 | -> | Plus |
2R | 16198485..16198946 | 575..1036 | 100 | -> | Plus |
2R | 16199007..16199176 | 1037..1206 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:40 Download gff for
BS06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12085286..12085843 | 17..574 | 100 | -> | Plus |
arm_2R | 12085990..12086451 | 575..1036 | 100 | -> | Plus |
arm_2R | 12086512..12086681 | 1037..1206 | 100 | | Plus |
BS06788.pep Sequence
Translation from 16 to 1206
> BS06788.pep
MSMLLRRNSSQLRLLLSSAAQATRLASSGVEPPSAGQQEIKKQRRQPPPV
VPDSEIKKSVFISQSSDVFTNLALEDWLYKNFDFSRHHVLLLWANDPCVV
IGRHQNPFTEANVSQLVERGITLARRNSGGGAVYHDLGNLNCTFFSPRER
YDRKYNLNIVTRALFREWAIKAEINERDDIVVMNKKISGTAAKLGHPNSY
HHCTILASANKLHLGESLVREPANYISKATASVPSPIRNLVDVNRTVNVA
QLRSAVGYEYLRTAATTLEDGGSTQTMQQRGFQLVNPTEKWFPGIEELRS
NYSSWDWVIGKTPKFTVQKELEVKGDEQDMKLKLSVEVEAGLMKEIGIQL
PQSDQLVPVVTPLQGKPYNEENLNGILGALKLVSASNVKQAINGSA*
BS06788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-PB | 396 | CG44243-PB | 1..396 | 1..396 | 2033 | 100 | Plus |
CG44243-PA | 396 | CG44243-PA | 1..396 | 1..396 | 2033 | 100 | Plus |