Clone BS06788 Report

Search the DGRC for BS06788

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG44243-RA
Protein status:BS06788.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06788.3prime Sequence

850 bp (835 high quality bases) assembled on 2005-12-04

> BS06788.3prime
ATGGTCTAGAAAGCTTTCAAGCTGATCCGTTTATTGCCTGCTTCACATTC
GATGCGCTGACGAGCTTAAGGGCGCCAAGTATTCCGTTCAGGTTCTCCTC
GTTGTAGGGCTTGCCCTGGAGCGGAGTCACCACCGGGACGAGCTGATCGC
TCTGCGGCAGCTGGATGCCGATCTCCTTCATTAATCCCGCTTCCACTTCC
ACGCTTAGTTTCAGTTTCATGTCCTGCTCATCGCCCTTCACCTCCAGTTC
CTTCTGCACGGTGAACTTGGGAGTCTTGCCGATGACCCAGTCCCAAGAGC
TGTAGTTGGAGCGCAATTCCTCAATGCCGGGGAACCATTTCTCTGTGGGA
TTGACCAGCTGAAAGCCGCGCTGCTGCATCGTCTGTGTGCTGCCGCCGTC
TTCAAGCGTAGTTGCAGCCGTTCTCAAATACTCGTAACCCACGGCGGAAC
GCAGCTGAGCAACGTTCACCGTGCGATTGACATCAACCAGGTTGCGAATG
GGCGACGGCACCGAAGCCGTGGCCTTGCTAATATAATTGGCCGGCTCCCG
CACCAGAGATTCGCCCAAGTGCAATTTGTTGGCGCTGGCCAAAATGGTGC
AGTGATGGTACGAGTTCGGGTGTCCCAGCTTGGCCGCAGTGCCGGAAATC
TTCTTATTCATCACTACAATGTCGTCGCGCTCATTTATCTCTGCCTTGAT
GGCCCATTCGCGGAACAAGGCCCTGGTCACGATGTTCAGGTTGTACTTGC
GATCGTAGCGCTCTCTGGGCGAGAAAAAGGTGCAGTTGAGGTTCCCAAGA
TCATGGTACACCGCTCCACCGCCACTATTGCGGCGTGCAAGTGTTATGCC

BS06788.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8446-PA 1191 CG8446-RA 358..1191 850..17 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-RB 2010 CG44243-RB 799..1632 850..17 4170 100 Minus
CG44243-RA 2131 CG44243-RA 1097..1930 850..17 4170 100 Minus
CG42837-RA 2131 CG42837-RA 1097..1930 850..17 4170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16198483..16198947 651..187 2325 100 Minus
2R 25286936 2R 16198138..16198338 850..650 1005 100 Minus
2R 25286936 2R 16199006..16199177 188..17 860 100 Minus
Blast to na_te.dros performed on 2015-01-30 14:43:48 has no hits.

BS06788.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:05 Download gff for BS06788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8446-PA 358..1191 17..850 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:57 Download gff for BS06788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8446-PA 358..1191 17..850 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:05:53 Download gff for BS06788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44243-RA 1097..1935 12..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:36:45 Download gff for BS06788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42837-RA 1097..1935 12..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:36:45 Download gff for BS06788.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16198138..16198338 650..850 100 -> Minus
2R 16198485..16198946 188..649 100 -> Minus
2R 16199007..16199182 12..187 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:05:53 Download gff for BS06788.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12085643..12085843 650..850 100 -> Minus
arm_2R 12085990..12086451 188..649 100 -> Minus
arm_2R 12086512..12086687 12..187 98   Minus

BS06788.5prime Sequence

872 bp (780 high quality bases) assembled on 2005-12-04

> BS06788.5prime
GAAGTTATCAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGC
TGCGGCTACTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGC
GGAGTGGAGCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCG
CCAGCCACCGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCA
TCTCGCAGTCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTG
TACAAAAACTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAA
CGACCCGTGCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTA
ATGTTTCGCAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGT
GGCGGTGGAGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTT
CTCGCCCAGAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCA
GGGCCTTGTTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGAC
GACATTGTAGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGG
ACACCCGAACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAAT
TGCACTTGGGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAG
GCCACGGCTTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCG
CACGGTGAACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGA
GAACGGCTGCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAG
CAGCGCGGCTTTCAGCTGGTCA

BS06788.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8446-PA 1191 CG8446-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-RB 2010 CG44243-RB 441..1297 16..872 4285 100 Plus
CG44243-RA 2131 CG44243-RA 739..1595 16..872 4285 100 Plus
CG42837-RA 2131 CG42837-RA 739..1595 16..872 4285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16197780..16198338 16..574 2795 100 Plus
2R 25286936 2R 16198483..16198782 573..872 1500 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:30:51 has no hits.

BS06788.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:06 Download gff for BS06788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8446-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:58 Download gff for BS06788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8446-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:15:04 Download gff for BS06788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44243-RA 736..1594 10..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:43 Download gff for BS06788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42837-RA 736..1594 10..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:43 Download gff for BS06788.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16197777..16198338 10..574 99 -> Plus
2R 16198485..16198781 575..871 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:15:04 Download gff for BS06788.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12085282..12085843 10..574 99 -> Plus
arm_2R 12085990..12086286 575..871 100   Plus

BS06788.complete Sequence

1223 bp (1223 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635618

> BS06788.complete
GAAGTTATCAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGC
TGCGGCTACTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGC
GGAGTGGAGCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCG
CCAGCCACCGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCA
TCTCGCAGTCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTG
TACAAAAACTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAA
CGACCCGTGCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTA
ATGTTTCGCAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGT
GGCGGTGGAGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTT
CTCGCCCAGAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCA
GGGCCTTGTTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGAC
GACATTGTAGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGG
ACACCCGAACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAAT
TGCACTTGGGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAG
GCCACGGCTTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCG
CACGGTGAACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGA
GAACGGCTGCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAG
CAGCGCGGCTTTCAGCTGGTCAATCCCACAGAGAAATGGTTCCCCGGCAT
TGAGGAATTGCGCTCCAACTACAGCTCTTGGGACTGGGTCATCGGCAAGA
CTCCCAAGTTCACCGTGCAGAAGGAACTGGAGGTGAAGGGCGATGAGCAG
GACATGAAACTGAAACTAAGCGTGGAAGTGGAAGCGGGATTAATGAAGGA
GATCGGCATCCAGCTGCCGCAGAGCGATCAGCTCGTCCCGGTGGTGACTC
CGCTCCAGGGCAAGCCCTACAACGAGGAGAACCTGAACGGAATACTTGGC
GCCCTTAAGCTCGTCAGCGCATCGAATGTGAAGCAGGCAATAAACGGATC
AGCTTGAAAGCTTTCTAGACCAT

BS06788.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-RB 1191 CG44243-PB 1..1191 17..1207 5955 100 Plus
CG44243-RA 1191 CG44243-PA 1..1191 17..1207 5955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-RB 2010 CG44243-RB 441..1632 16..1207 5960 100 Plus
CG44243-RA 2131 CG44243-RA 739..1930 16..1207 5960 100 Plus
CG42837-RA 2131 CG42837-RA 739..1930 16..1207 5960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16197780..16198338 16..574 2795 100 Plus
2R 25286936 2R 16198483..16198947 573..1037 2325 100 Plus
2R 25286936 2R 16199006..16199177 1036..1207 860 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:46:33 has no hits.

BS06788.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:38 Download gff for BS06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 1..1191 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:25 Download gff for BS06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 240..1439 10..1212 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:40 Download gff for BS06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG44243-RA 740..1929 17..1206 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:38 Download gff for BS06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 240..1439 10..1212 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:35 Download gff for BS06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG42837-RA 740..1929 17..1206 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:35 Download gff for BS06788.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16197781..16198338 17..574 100 -> Plus
2R 16198485..16198946 575..1036 100 -> Plus
2R 16199007..16199176 1037..1206 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:40 Download gff for BS06788.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12085286..12085843 17..574 100 -> Plus
arm_2R 12085990..12086451 575..1036 100 -> Plus
arm_2R 12086512..12086681 1037..1206 100   Plus

BS06788.pep Sequence

Translation from 16 to 1206

> BS06788.pep
MSMLLRRNSSQLRLLLSSAAQATRLASSGVEPPSAGQQEIKKQRRQPPPV
VPDSEIKKSVFISQSSDVFTNLALEDWLYKNFDFSRHHVLLLWANDPCVV
IGRHQNPFTEANVSQLVERGITLARRNSGGGAVYHDLGNLNCTFFSPRER
YDRKYNLNIVTRALFREWAIKAEINERDDIVVMNKKISGTAAKLGHPNSY
HHCTILASANKLHLGESLVREPANYISKATASVPSPIRNLVDVNRTVNVA
QLRSAVGYEYLRTAATTLEDGGSTQTMQQRGFQLVNPTEKWFPGIEELRS
NYSSWDWVIGKTPKFTVQKELEVKGDEQDMKLKLSVEVEAGLMKEIGIQL
PQSDQLVPVVTPLQGKPYNEENLNGILGALKLVSASNVKQAINGSA*

BS06788.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-PB 396 CG44243-PB 1..396 1..396 2033 100 Plus
CG44243-PA 396 CG44243-PA 1..396 1..396 2033 100 Plus