Clone BS06789 Report

Search the DGRC for BS06789

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptKebab-RA
Protein status:BS06789.pep: full length peptide match
Sequenced Size:1676

Clone Sequence Records

BS06789.3prime Sequence

854 bp (779 high quality bases) assembled on 2005-12-04

> BS06789.3prime
ATGGTCTAGAAAGCTTCTAAGGGCTTCCCTGGGGCGGCTTAATGTTTAGC
TGTAGAAGATTTGAATAATTATCCTCATACAGCCGCTGCAGTTGCTTCAT
ACGTTCGTGCAACTCCTCCTCCTTTGGATTATCGTTCAAATGTAATTGGG
TTAGAAGGCCGATATTTCTGTTTCTTAAAACCACACAGTCGGCCAAGTCT
TGTATTTGGTCATTAAAGGCTTCGATGCATTGCTTGTTAGCCTTACAACA
GCGTTTTAATTTTATCTTGGCGAGGCTTACGAGCTCGGAGAACTCCTGGA
GACGCAGGCGTTGCAGTTGGAGTTCATGGAGGGTCTCTTTTTGAAAATCC
AGGAGTCTGACGAAGTCCTGATTCCCATCGCGCTCCGTAACTTTATCCAT
GTCCTTGGATACGGGGGATTCCGGCATCAGAGATTCTTGGTAATTGTTTA
ATCTTTCTTTCTCTATTTTTATGTTTTCAAACTTCTGTTGCAGGCTCATT
ACATCATAGGATGTACCAGATGCCGATGCAAGTTGTTCAATTCTCTGCTT
TTCAGAAACAACGGGGAGCGCACACATGCCTTCTCCTTTTCGATGTTCGA
GGACATCCAGCAAGAAATTGAGTAATTCCAGCACATGGGCGATGGCTTGT
GTGCTGTTCGGCGTTTGAAGCCAGCTTTTGTTCACCTTTTTGGTGTACTG
CAGCTGCTGCAGTGCCTCCACCATCTGCTGCACATAGCAATCCCTGCTAA
GATGCGAAAATGTTATCCCATTAAAGGGTAGGAGGCGCACTAGTTGTTTC
ACAAAACCCGAGATAAGCTGACGTAACTGGTAGTCAGTCTTTTTTCGCAT
TCCT

BS06789.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31672-PA 1644 CG31672-RA 817..1644 844..17 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Kebab-RB 2188 CG31672-RB 925..1763 854..17 4155 99.8 Minus
Kebab-RA 2173 CG31672-RA 922..1760 854..17 4155 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2046746..2047577 848..17 4145 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 16:55:43 has no hits.

BS06789.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:07 Download gff for BS06789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31672-PA 806..1644 17..854 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:59 Download gff for BS06789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31672-PA 806..1644 17..854 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:40 Download gff for BS06789.3prime
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 922..1762 13..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:55 Download gff for BS06789.3prime
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 922..1762 13..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:55 Download gff for BS06789.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2046739..2047579 13..854 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:40 Download gff for BS06789.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2046739..2047579 13..854 99   Minus

BS06789.5prime Sequence

904 bp (829 high quality bases) assembled on 2005-12-04

> BS06789.5prime
GAAGTTATCAGTCGACATGAGTAGTATGGCTAAATCGCCAGATATGCGAA
CTCCAGGGTGCTGCTCCCCCTTGCGTACAAAGGAATTGCTGGAGAGACAA
AGGTCCAGTAGGTGCACCCCCGCAAAAGGATATCTAACCCCACGCAACTG
CCAGAGCCCCAAACACCCAGAGATGCGGATACCTTCCATATTCGTTACCG
ATGCCGACTACGGCTTGGAGCGCCCGAAACAATTGCTACAGCGCCTGGAG
CGATCACTATATCGATCTTCCTCTGCTTCCAAAGTACCACCAAAACACTC
ATTGTTAGCTTCCCAGAACAGGCAGCGGACCTGGGAAGGACCCAAAACAC
CAGAGTTCCGCCGTACCAACAAAACTATACCCGCTTCGGAACCTCGTCCA
AGACGTGCTAAGGAACTTCTGGAGGATCTTAGGTCCAAGCATCAAGGAAC
TCCTGCCACGAAAATTCCGTCCCAGAGGAATCCAAAGGAAAACCAAGAAC
TTTCAAAGAGCCATACATGCATACCATCCTCGGAGCCACAGCCTATCCGT
CCAAAATTGATCCTCGAACGGGAGCGCCAGGAGTCTATAACCAATCGCTT
GGCATCAACTTCTATTGACCGCCTAAAAACAAAGCCACCAAGGAGTAGCT
TTACATCGAGCAGGCTTCTAGTGCCACAGATGGGATTTTCGTACCCCAAG
GATCCGAANAGGCTTCACGAATCCGACAAAGGAATCAAGCTGACCACCTC
AAAGCGAAAGTTGGACTTCAAAACTGAGCTGGGGACTGACTGGCTGCGGC
GGGAGCTGGAAAAGATTGGCAAGGAATGGCGGAAAAAGACTGACTACCAG
TTACGTCAGCTTATCTCGGGGTTTGTGAAACACTAGTGCGCCTCCTACCC
TTTT

BS06789.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31672-PA 1644 CG31672-RA 1..866 17..882 4286 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
Kebab-RA 2173 CG31672-RA 117..1004 17..903 4389 99.7 Plus
Kebab-RB 2188 CG31672-RB 117..1007 17..903 4349 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2046426..2046821 509..903 1904 99.2 Plus
2L 23513712 2L 2045699..2046011 48..360 1565 100 Plus
2L 23513712 2L 2046068..2046218 360..510 755 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:45:47 has no hits.

BS06789.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:08 Download gff for BS06789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31672-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:01 Download gff for BS06789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31672-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:57 Download gff for BS06789.5prime
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 117..1004 17..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:16:32 Download gff for BS06789.5prime
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 117..1004 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:16:32 Download gff for BS06789.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2045700..2046011 49..360 100 -> Plus
2L 2046069..2046218 361..510 100 -> Plus
2L 2046428..2046821 511..904 98   Plus
2L 2045610..2045641 17..48 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:57 Download gff for BS06789.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2045610..2045641 17..48 100 -> Plus
arm_2L 2045700..2046011 49..360 100 -> Plus
arm_2L 2046069..2046218 361..510 100 -> Plus
arm_2L 2046428..2046821 511..904 98   Plus

BS06789.complete Sequence

1676 bp assembled on 2009-08-24

GenBank Submission: KX801398

> BS06789.complete
GAAGTTATCAGTCGACATGAGTAGTATGGCTAAATCGCCAGATATGCGAA
CTCCAGGGTGCTGCTCCCCCTTGCGTACAAAGGAATTGCTGGAGAGACAA
AGGTCCAGTAGGTGCACCCCCGCAAAAGGATATCTAACCCCACGCAACTG
CCAGAGCCCCAAACACCCAGAGATGCGGATACCTTCCATATTCGTTACCG
ATGCCGACTACGGCTTGGAGCGCCCGAAACAATTGCTACAGCGCCTGGAG
CGATCACTATATCGATCTTCCTCTGCTTCCAAAGTACCACCAAAACACTC
ATTGTTAGCTTCCCAGAACAGGCAGCGGACCTGGGAAGGACCCAAAACAC
CAGAGTTCCGCCGTACCAACAAAACTATACCCGCTTCGGAACCTCGTCCA
AGACGTGCTAAGGAACTTCTGGAGGATCTTAGGTCCAAGCATCAAGGAAC
TCCTGCCACGAAAATTCCGTCCCAGAGGAATCCAAAGGAAAACCAAGAAC
TTTCAAAGAGCCATACATGCATACCATCCTCGGAGCCACAGCCTATCCGT
CCAAAATTGATCCTCGAACGGGAGCGCCAGGAGTCTATAACCAATCGCTT
GGCATCAACTTCTATTGACCGCCTAAAAACAAAGCCACCAAGGAGTAGCT
TTACATCGAGCAGGCTTCTAGTGCCACAGATGGGATTTTCGTACCCCAAG
GATCCGAAAAGGCTTCACGAATCCGACAAAGGAATCAAGCTGACCACCTC
AAAGCGAAAGTTGGACTTCAAAACTGAGCTGGGGACTGACTGGCTGCGGC
GGGAGCTGGAAAAGATTGGCAAGGAATGGCGGAAAAAGACTGACTACCAG
TTACGTCAGCTTATCTCGGGTTTTGTGAAACAACTAGTGCGCCTCCTACC
CTTTAATGGGATAACATTTTCGCATCTTAGCAGGGATTGCTATGTGCAGC
AGATGGTGGAGGCACTGCAGCAGCTGCAGTACACCAAAAAGGTGAACAAA
AGCTGGCTTCAAACGCCGAACAGCACACAAGCCATCGCCCATGTGCTGGA
ATTACTCAATTTCTTGCTGGATGTCCTCGAACATCGAAAAGGAGAAGGCA
TGTGTGCGCTCCCCGTTGTTTCTGAAAAGCAGAGAATTGAACAACTTGCA
TCGGCATCTGGTACATCCTATGATGTAATGAGCCTGCAACAGAAGTTTGA
AAACATAAAAATAGAGAAAGAAAGATTAAACAATTACCAAGAATCTCTGA
TGCCGGAATCCCCCGTATCCAAGGACATGGATAAAGTTACGGAGCGCGAT
GGGAATCAGGACTTCGTCAGACTCCTGGATTTTCAAAAAGAGACCCTCCA
TGAACTCCAACTGCAACGCCTGCGTCTCCAGGAGTTCTCCGAGCTCGTAA
GCCTCGCCAAGATAAAATTAAAACGCTGTTGTAAGGCTAACAAGCAATGC
ATCGAAGCCTTTAATGACCAAATACAAGACTTGGCCGACTGTGTGGTTTT
AAGAAACAGAAATATCGGCCTTCTAACCCAATTACATTTGAACGATAATC
CAAAGGAGGAGGAGTTGCACGAACGTATGAAGCAACTGCAGCGGCTGTAT
GAGGATAATTATTCAAATCTTCTACAGCTAAACATTAAGCCGCCCCAGGG
AAGCCCTTAGAAGCTTTCTAGACCAT

BS06789.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Kebab-RA 1644 CG31672-PA 1..1644 17..1660 8220 100 Plus
Kebab-RB 1647 CG31672-PB 1..1647 17..1660 8155 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Kebab-RA 2173 CG31672-RA 117..1760 17..1660 8220 100 Plus
Kebab-RB 2188 CG31672-RB 117..1763 17..1660 8155 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2046426..2047577 509..1660 5760 100 Plus
2L 23513712 2L 2045699..2046011 48..360 1565 100 Plus
2L 23513712 2L 2046068..2046218 360..510 755 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:33:06 has no hits.

BS06789.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:58 Download gff for BS06789.complete
Subject Subject Range Query Range Percent Splice Strand
CG31672-RA 86..1729 17..1660 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:50 Download gff for BS06789.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 117..1760 17..1660 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:15 Download gff for BS06789.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 117..1760 17..1660 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:15 Download gff for BS06789.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2045610..2045641 17..48 100 -> Plus
2L 2045700..2046011 49..360 100 -> Plus
2L 2046069..2046218 361..510 100 -> Plus
2L 2046428..2047577 511..1660 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:50 Download gff for BS06789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2045610..2045641 17..48 100 -> Plus
arm_2L 2045700..2046011 49..360 100 -> Plus
arm_2L 2046069..2046218 361..510 100 -> Plus
arm_2L 2046428..2047577 511..1660 100   Plus

BS06789.pep Sequence

Translation from 16 to 1659

> BS06789.pep
MSSMAKSPDMRTPGCCSPLRTKELLERQRSSRCTPAKGYLTPRNCQSPKH
PEMRIPSIFVTDADYGLERPKQLLQRLERSLYRSSSASKVPPKHSLLASQ
NRQRTWEGPKTPEFRRTNKTIPASEPRPRRAKELLEDLRSKHQGTPATKI
PSQRNPKENQELSKSHTCIPSSEPQPIRPKLILERERQESITNRLASTSI
DRLKTKPPRSSFTSSRLLVPQMGFSYPKDPKRLHESDKGIKLTTSKRKLD
FKTELGTDWLRRELEKIGKEWRKKTDYQLRQLISGFVKQLVRLLPFNGIT
FSHLSRDCYVQQMVEALQQLQYTKKVNKSWLQTPNSTQAIAHVLELLNFL
LDVLEHRKGEGMCALPVVSEKQRIEQLASASGTSYDVMSLQQKFENIKIE
KERLNNYQESLMPESPVSKDMDKVTERDGNQDFVRLLDFQKETLHELQLQ
RLRLQEFSELVSLAKIKLKRCCKANKQCIEAFNDQIQDLADCVVLRNRNI
GLLTQLHLNDNPKEEELHERMKQLQRLYEDNYSNLLQLNIKPPQGSP*

BS06789.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Kebab-PA 547 CG31672-PA 1..547 1..547 2831 100 Plus
Kebab-PB 548 CG31672-PB 1..548 1..547 2819 99.8 Plus