Clone Sequence Records
BS06789.3prime Sequence
854 bp (779 high quality bases) assembled on 2005-12-04
> BS06789.3prime
ATGGTCTAGAAAGCTTCTAAGGGCTTCCCTGGGGCGGCTTAATGTTTAGC
TGTAGAAGATTTGAATAATTATCCTCATACAGCCGCTGCAGTTGCTTCAT
ACGTTCGTGCAACTCCTCCTCCTTTGGATTATCGTTCAAATGTAATTGGG
TTAGAAGGCCGATATTTCTGTTTCTTAAAACCACACAGTCGGCCAAGTCT
TGTATTTGGTCATTAAAGGCTTCGATGCATTGCTTGTTAGCCTTACAACA
GCGTTTTAATTTTATCTTGGCGAGGCTTACGAGCTCGGAGAACTCCTGGA
GACGCAGGCGTTGCAGTTGGAGTTCATGGAGGGTCTCTTTTTGAAAATCC
AGGAGTCTGACGAAGTCCTGATTCCCATCGCGCTCCGTAACTTTATCCAT
GTCCTTGGATACGGGGGATTCCGGCATCAGAGATTCTTGGTAATTGTTTA
ATCTTTCTTTCTCTATTTTTATGTTTTCAAACTTCTGTTGCAGGCTCATT
ACATCATAGGATGTACCAGATGCCGATGCAAGTTGTTCAATTCTCTGCTT
TTCAGAAACAACGGGGAGCGCACACATGCCTTCTCCTTTTCGATGTTCGA
GGACATCCAGCAAGAAATTGAGTAATTCCAGCACATGGGCGATGGCTTGT
GTGCTGTTCGGCGTTTGAAGCCAGCTTTTGTTCACCTTTTTGGTGTACTG
CAGCTGCTGCAGTGCCTCCACCATCTGCTGCACATAGCAATCCCTGCTAA
GATGCGAAAATGTTATCCCATTAAAGGGTAGGAGGCGCACTAGTTGTTTC
ACAAAACCCGAGATAAGCTGACGTAACTGGTAGTCAGTCTTTTTTCGCAT
TCCT
BS06789.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31672-PA | 1644 | CG31672-RA | 817..1644 | 844..17 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kebab-RB | 2188 | CG31672-RB | 925..1763 | 854..17 | 4155 | 99.8 | Minus |
Kebab-RA | 2173 | CG31672-RA | 922..1760 | 854..17 | 4155 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2046746..2047577 | 848..17 | 4145 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:55:43 has no hits.
BS06789.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:07 Download gff for
BS06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31672-PA | 806..1644 | 17..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:34:59 Download gff for
BS06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31672-PA | 806..1644 | 17..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:46:40 Download gff for
BS06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RA | 922..1762 | 13..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:55 Download gff for
BS06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RA | 922..1762 | 13..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:55 Download gff for
BS06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2046739..2047579 | 13..854 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:46:40 Download gff for
BS06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2046739..2047579 | 13..854 | 99 | | Minus |
BS06789.5prime Sequence
904 bp (829 high quality bases) assembled on 2005-12-04
> BS06789.5prime
GAAGTTATCAGTCGACATGAGTAGTATGGCTAAATCGCCAGATATGCGAA
CTCCAGGGTGCTGCTCCCCCTTGCGTACAAAGGAATTGCTGGAGAGACAA
AGGTCCAGTAGGTGCACCCCCGCAAAAGGATATCTAACCCCACGCAACTG
CCAGAGCCCCAAACACCCAGAGATGCGGATACCTTCCATATTCGTTACCG
ATGCCGACTACGGCTTGGAGCGCCCGAAACAATTGCTACAGCGCCTGGAG
CGATCACTATATCGATCTTCCTCTGCTTCCAAAGTACCACCAAAACACTC
ATTGTTAGCTTCCCAGAACAGGCAGCGGACCTGGGAAGGACCCAAAACAC
CAGAGTTCCGCCGTACCAACAAAACTATACCCGCTTCGGAACCTCGTCCA
AGACGTGCTAAGGAACTTCTGGAGGATCTTAGGTCCAAGCATCAAGGAAC
TCCTGCCACGAAAATTCCGTCCCAGAGGAATCCAAAGGAAAACCAAGAAC
TTTCAAAGAGCCATACATGCATACCATCCTCGGAGCCACAGCCTATCCGT
CCAAAATTGATCCTCGAACGGGAGCGCCAGGAGTCTATAACCAATCGCTT
GGCATCAACTTCTATTGACCGCCTAAAAACAAAGCCACCAAGGAGTAGCT
TTACATCGAGCAGGCTTCTAGTGCCACAGATGGGATTTTCGTACCCCAAG
GATCCGAANAGGCTTCACGAATCCGACAAAGGAATCAAGCTGACCACCTC
AAAGCGAAAGTTGGACTTCAAAACTGAGCTGGGGACTGACTGGCTGCGGC
GGGAGCTGGAAAAGATTGGCAAGGAATGGCGGAAAAAGACTGACTACCAG
TTACGTCAGCTTATCTCGGGGTTTGTGAAACACTAGTGCGCCTCCTACCC
TTTT
BS06789.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31672-PA | 1644 | CG31672-RA | 1..866 | 17..882 | 4286 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kebab-RA | 2173 | CG31672-RA | 117..1004 | 17..903 | 4389 | 99.7 | Plus |
Kebab-RB | 2188 | CG31672-RB | 117..1007 | 17..903 | 4349 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2046426..2046821 | 509..903 | 1904 | 99.2 | Plus |
2L | 23513712 | 2L | 2045699..2046011 | 48..360 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 2046068..2046218 | 360..510 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:45:47 has no hits.
BS06789.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:08 Download gff for
BS06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31672-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:01 Download gff for
BS06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31672-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:02:57 Download gff for
BS06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RA | 117..1004 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:16:32 Download gff for
BS06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RA | 117..1004 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:16:32 Download gff for
BS06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2045700..2046011 | 49..360 | 100 | -> | Plus |
2L | 2046069..2046218 | 361..510 | 100 | -> | Plus |
2L | 2046428..2046821 | 511..904 | 98 | | Plus |
2L | 2045610..2045641 | 17..48 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:02:57 Download gff for
BS06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2045610..2045641 | 17..48 | 100 | -> | Plus |
arm_2L | 2045700..2046011 | 49..360 | 100 | -> | Plus |
arm_2L | 2046069..2046218 | 361..510 | 100 | -> | Plus |
arm_2L | 2046428..2046821 | 511..904 | 98 | | Plus |
BS06789.complete Sequence
1676 bp assembled on 2009-08-24
GenBank Submission: KX801398
> BS06789.complete
GAAGTTATCAGTCGACATGAGTAGTATGGCTAAATCGCCAGATATGCGAA
CTCCAGGGTGCTGCTCCCCCTTGCGTACAAAGGAATTGCTGGAGAGACAA
AGGTCCAGTAGGTGCACCCCCGCAAAAGGATATCTAACCCCACGCAACTG
CCAGAGCCCCAAACACCCAGAGATGCGGATACCTTCCATATTCGTTACCG
ATGCCGACTACGGCTTGGAGCGCCCGAAACAATTGCTACAGCGCCTGGAG
CGATCACTATATCGATCTTCCTCTGCTTCCAAAGTACCACCAAAACACTC
ATTGTTAGCTTCCCAGAACAGGCAGCGGACCTGGGAAGGACCCAAAACAC
CAGAGTTCCGCCGTACCAACAAAACTATACCCGCTTCGGAACCTCGTCCA
AGACGTGCTAAGGAACTTCTGGAGGATCTTAGGTCCAAGCATCAAGGAAC
TCCTGCCACGAAAATTCCGTCCCAGAGGAATCCAAAGGAAAACCAAGAAC
TTTCAAAGAGCCATACATGCATACCATCCTCGGAGCCACAGCCTATCCGT
CCAAAATTGATCCTCGAACGGGAGCGCCAGGAGTCTATAACCAATCGCTT
GGCATCAACTTCTATTGACCGCCTAAAAACAAAGCCACCAAGGAGTAGCT
TTACATCGAGCAGGCTTCTAGTGCCACAGATGGGATTTTCGTACCCCAAG
GATCCGAAAAGGCTTCACGAATCCGACAAAGGAATCAAGCTGACCACCTC
AAAGCGAAAGTTGGACTTCAAAACTGAGCTGGGGACTGACTGGCTGCGGC
GGGAGCTGGAAAAGATTGGCAAGGAATGGCGGAAAAAGACTGACTACCAG
TTACGTCAGCTTATCTCGGGTTTTGTGAAACAACTAGTGCGCCTCCTACC
CTTTAATGGGATAACATTTTCGCATCTTAGCAGGGATTGCTATGTGCAGC
AGATGGTGGAGGCACTGCAGCAGCTGCAGTACACCAAAAAGGTGAACAAA
AGCTGGCTTCAAACGCCGAACAGCACACAAGCCATCGCCCATGTGCTGGA
ATTACTCAATTTCTTGCTGGATGTCCTCGAACATCGAAAAGGAGAAGGCA
TGTGTGCGCTCCCCGTTGTTTCTGAAAAGCAGAGAATTGAACAACTTGCA
TCGGCATCTGGTACATCCTATGATGTAATGAGCCTGCAACAGAAGTTTGA
AAACATAAAAATAGAGAAAGAAAGATTAAACAATTACCAAGAATCTCTGA
TGCCGGAATCCCCCGTATCCAAGGACATGGATAAAGTTACGGAGCGCGAT
GGGAATCAGGACTTCGTCAGACTCCTGGATTTTCAAAAAGAGACCCTCCA
TGAACTCCAACTGCAACGCCTGCGTCTCCAGGAGTTCTCCGAGCTCGTAA
GCCTCGCCAAGATAAAATTAAAACGCTGTTGTAAGGCTAACAAGCAATGC
ATCGAAGCCTTTAATGACCAAATACAAGACTTGGCCGACTGTGTGGTTTT
AAGAAACAGAAATATCGGCCTTCTAACCCAATTACATTTGAACGATAATC
CAAAGGAGGAGGAGTTGCACGAACGTATGAAGCAACTGCAGCGGCTGTAT
GAGGATAATTATTCAAATCTTCTACAGCTAAACATTAAGCCGCCCCAGGG
AAGCCCTTAGAAGCTTTCTAGACCAT
BS06789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kebab-RA | 1644 | CG31672-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Kebab-RB | 1647 | CG31672-PB | 1..1647 | 17..1660 | 8155 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kebab-RA | 2173 | CG31672-RA | 117..1760 | 17..1660 | 8220 | 100 | Plus |
Kebab-RB | 2188 | CG31672-RB | 117..1763 | 17..1660 | 8155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2046426..2047577 | 509..1660 | 5760 | 100 | Plus |
2L | 23513712 | 2L | 2045699..2046011 | 48..360 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 2046068..2046218 | 360..510 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:33:06 has no hits.
BS06789.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:58 Download gff for
BS06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31672-RA | 86..1729 | 17..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:50 Download gff for
BS06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RA | 117..1760 | 17..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:15 Download gff for
BS06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kebab-RA | 117..1760 | 17..1660 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:15 Download gff for
BS06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2045610..2045641 | 17..48 | 100 | -> | Plus |
2L | 2045700..2046011 | 49..360 | 100 | -> | Plus |
2L | 2046069..2046218 | 361..510 | 100 | -> | Plus |
2L | 2046428..2047577 | 511..1660 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:50 Download gff for
BS06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2045610..2045641 | 17..48 | 100 | -> | Plus |
arm_2L | 2045700..2046011 | 49..360 | 100 | -> | Plus |
arm_2L | 2046069..2046218 | 361..510 | 100 | -> | Plus |
arm_2L | 2046428..2047577 | 511..1660 | 100 | | Plus |
BS06789.pep Sequence
Translation from 16 to 1659
> BS06789.pep
MSSMAKSPDMRTPGCCSPLRTKELLERQRSSRCTPAKGYLTPRNCQSPKH
PEMRIPSIFVTDADYGLERPKQLLQRLERSLYRSSSASKVPPKHSLLASQ
NRQRTWEGPKTPEFRRTNKTIPASEPRPRRAKELLEDLRSKHQGTPATKI
PSQRNPKENQELSKSHTCIPSSEPQPIRPKLILERERQESITNRLASTSI
DRLKTKPPRSSFTSSRLLVPQMGFSYPKDPKRLHESDKGIKLTTSKRKLD
FKTELGTDWLRRELEKIGKEWRKKTDYQLRQLISGFVKQLVRLLPFNGIT
FSHLSRDCYVQQMVEALQQLQYTKKVNKSWLQTPNSTQAIAHVLELLNFL
LDVLEHRKGEGMCALPVVSEKQRIEQLASASGTSYDVMSLQQKFENIKIE
KERLNNYQESLMPESPVSKDMDKVTERDGNQDFVRLLDFQKETLHELQLQ
RLRLQEFSELVSLAKIKLKRCCKANKQCIEAFNDQIQDLADCVVLRNRNI
GLLTQLHLNDNPKEEELHERMKQLQRLYEDNYSNLLQLNIKPPQGSP*
BS06789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kebab-PA | 547 | CG31672-PA | 1..547 | 1..547 | 2831 | 100 | Plus |
Kebab-PB | 548 | CG31672-PB | 1..548 | 1..547 | 2819 | 99.8 | Plus |