Clone BS06793 Report

Search the DGRC for BS06793

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:67
Well:93
Vector:pDNR-Dual
Associated Gene/TranscripteRF1-RA
Protein status:BS06793.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06793.3prime Sequence

868 bp (843 high quality bases) assembled on 2005-12-04

> BS06793.3prime
ATGGTCTAGAAAGCTTCTAGTAATCATCTAGATCGAAGCCATCATTGTCC
AATTCATCGAGCTGCATACTCTGGAAATCCACCTTGTAGCGTAAGATACC
GCCGATTCCACCGAAACCTCGCACGAACTGACTTCCTTCCTGGGACTTAT
CCGTGATAATCTCCAGTGTGGCGCCGAACATTTTGTAGTTGTTTGCCAGC
CATTCCAGCAGCGGCTGAGACTCAATCAGCTCCATTTCTACCCCGCTCTC
CTTGTCAGTGAAGTGCGACTTGTCCTTTTCCTGCTCGGGCGTCAAATGTA
ATACTGTCGTTGACGTCGAGTTGGCATGATTCTTGAGAACATAACGTTGA
ATATCCAGGTTCTCCCAACAAATGAGAGTCTCTACAGAGCCAAGTTCCAG
TGCCCGCAAAGTGTCCTCCACTCCAAAACAGTATTTGCCAGTATCCTGAG
AAATTTCATCAAAGTAGCGACCAATGAGTTTCTTCTCCTGTATGAATTTA
ACGTTCTGCAATGATTCGGCCGCCAGTTCAATGGCCTGGTTAAAACCGTT
TTCCCCACCATACGACACGTCCACCAGCTTGATGACTTTTGATTGCAAAC
GAGGATCGAACATATCAGACTGACTAAGCTCAGTCTTGAAATCCGCACTA
CCAGCCAGGATGAGTCCGGCAATGTTGGGCTTGTCGTTCGTGATGAAGAG
CTGGGTGGCCACCTCGGCGACCTTCCGCACGTAGTTGTGGCGCTTCTCCA
TACGCAGACGGGCGAAACGAAGGGCGGACTGACCACCACGACCGTGCTTC
TTCGGCAGATCGACGGTGAACTTGTGGAGCACCTCGCGCGTGTTGCCCTG
AAGGGTACCGAATAGCGC

BS06793.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5605-PC 1317 eRF1-RC 466..1317 868..17 4260 100 Minus
CG5605-PB 1317 eRF1-RB 466..1317 868..17 4260 100 Minus
CG5605-PE 1317 eRF1-RE 466..1317 868..17 4260 100 Minus
CG5605-PF 1317 eRF1-RF 466..1317 868..17 4260 100 Minus
CG5605-PA 1317 eRF1-RA 466..1317 868..17 4260 100 Minus
CG5605-PG 1317 eRF1-RG 466..1317 868..17 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-RG 1739 CG5605-RG 650..1501 868..17 4260 100 Minus
eRF1-RA 2321 CG5605-RA 1232..2083 868..17 4260 100 Minus
eRF1-RF 1788 CG5605-RF 699..1550 868..17 4260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20350762..20351028 868..602 1335 100 Minus
3L 28110227 3L 20351322..20351521 447..248 1000 100 Minus
3L 28110227 3L 20351094..20351250 601..445 785 100 Minus
3L 28110227 3L 20351581..20351733 249..97 765 100 Minus
3L 28110227 3L 20352806..20352889 100..17 420 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:44:52 has no hits.

BS06793.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:15 Download gff for BS06793.3prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-PG 466..1317 17..868 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:11 Download gff for BS06793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5605-PG 466..1317 17..868 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:26:52 Download gff for BS06793.3prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 699..1550 17..868 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:38 Download gff for BS06793.3prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 699..1550 17..868 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:38 Download gff for BS06793.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20350762..20351028 602..868 100 -> Minus
3L 20351094..20351249 446..601 100 -> Minus
3L 20351324..20351521 248..445 100 -> Minus
3L 20351583..20351730 100..247 100 -> Minus
3L 20352807..20352889 17..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:26:52 Download gff for BS06793.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20343862..20344128 602..868 100 -> Minus
arm_3L 20344194..20344349 446..601 100 -> Minus
arm_3L 20344424..20344621 248..445 100 -> Minus
arm_3L 20344683..20344830 100..247 100 -> Minus
arm_3L 20345907..20345989 17..99 100   Minus

BS06793.5prime Sequence

863 bp (791 high quality bases) assembled on 2005-12-04

> BS06793.5prime
GAAGTTATCAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATG
TCGAGATCTGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGC
GGCAATGGAACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAAT
CTCGCGCGTCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACA
TCAAGTCGCGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTA
CAGCACAGACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCAT
CTACTGCGGCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACA
TAGACTTTGAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGAC
AACAAGTTCCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAA
ATTTGGATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTC
AGGGCAACACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAG
AAGCACGGTCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTAT
GGAGAAGCGCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGC
TCTTCATCACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGT
AGTGCGGATTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCG
TTTGCAATCAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAA
ACGGTTTTAACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTT
AAATTCATACAGG

BS06793.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5605-PC 1317 eRF1-RC 1..847 17..863 4235 100 Plus
CG5605-PB 1317 eRF1-RB 1..847 17..863 4235 100 Plus
CG5605-PE 1317 eRF1-RE 1..847 17..863 4235 100 Plus
CG5605-PF 1317 eRF1-RF 1..847 17..863 4235 100 Plus
CG5605-PA 1317 eRF1-RA 1..847 17..863 4235 100 Plus
CG5605-PG 1317 eRF1-RG 1..847 17..863 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-RI 1873 CG5605-RI 211..1057 17..863 4235 100 Plus
eRF1-RH 1806 CG5605-RH 211..1057 17..863 4235 100 Plus
eRF1-RG 1739 CG5605-RG 185..1031 17..863 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20350557..20351028 277..748 2360 100 Plus
3L 28110227 3L 20350304..20350480 102..278 885 100 Plus
3L 28110227 3L 20351094..20351208 749..863 575 100 Plus
3L 28110227 3L 20349121..20349206 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:33:12 has no hits.

BS06793.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:16 Download gff for BS06793.5prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-PG 1..847 17..863 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:13 Download gff for BS06793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5605-PG 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:41:24 Download gff for BS06793.5prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-RG 249..1101 10..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:44 Download gff for BS06793.5prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-RG 179..1031 10..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:44 Download gff for BS06793.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20350305..20350480 103..278 100 -> Plus
3L 20350559..20351028 279..748 100 -> Plus
3L 20351094..20351208 749..863 100   Plus
3L 20349115..20349206 10..102 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:41:24 Download gff for BS06793.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20342215..20342306 10..102 96 -> Plus
arm_3L 20343405..20343580 103..278 100 -> Plus
arm_3L 20343659..20344128 279..748 100 -> Plus
arm_3L 20344194..20344308 749..863 100   Plus

BS06793.complete Sequence

1349 bp (1349 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635619

> BS06793.complete
GAAGTTATCAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATG
TCGAGATCTGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGC
GGCAATGGAACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAAT
CTCGCGCGTCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACA
TCAAGTCGCGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTA
CAGCACAGACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCAT
CTACTGCGGCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACA
TAGACTTTGAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGAC
AACAAGTTCCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAA
ATTTGGATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTC
AGGGCAACACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAG
AAGCACGGTCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTAT
GGAGAAGCGCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGC
TCTTCATCACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGT
AGTGCGGATTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCG
TTTGCAATCAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAA
ACGGTTTTAACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTT
AAATTCATACAGGAGAAGAAACTCATTGGTCGCTACTTTGATGAAATTTC
TCAGGATACTGGCAAATACTGTTTTGGAGTGGAGGACACTTTGCGGGCAC
TGGAACTTGGCTCTGTAGAGACTCTCATTTGTTGGGAGAACCTGGATATT
CAACGTTATGTTCTCAAGAATCATGCCAACTCGACGTCAACGACAGTATT
ACATTTGACGCCCGAGCAGGAAAAGGACAAGTCGCACTTCACTGACAAGG
AGAGCGGGGTAGAAATGGAGCTGATTGAGTCTCAGCCGCTGCTGGAATGG
CTGGCAAACAACTACAAAATGTTCGGCGCCACACTGGAGATTATCACGGA
TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCG
GTATCTTACGCTACAAGGTGGATTTCCAGAGTATGCAGCTCGATGAATTG
GACAATGATGGCTTCGATCTAGATGATTACTAGAAGCTTTCTAGACCAT

BS06793.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-RG 1317 CG5605-PG 1..1317 17..1333 6585 100 Plus
eRF1-RA 1317 CG5605-PA 1..1317 17..1333 6585 100 Plus
eRF1-RF 1317 CG5605-PF 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-RG 1739 CG5605-RG 185..1501 17..1333 6585 100 Plus
eRF1-RA 2321 CG5605-RA 767..2083 17..1333 6585 100 Plus
eRF1-RF 1788 CG5605-RF 234..1550 17..1333 6585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20350557..20351028 277..748 2360 100 Plus
3L 28110227 3L 20351322..20351521 903..1102 1000 100 Plus
3L 28110227 3L 20350304..20350480 102..278 885 100 Plus
3L 28110227 3L 20351094..20351250 749..905 785 100 Plus
3L 28110227 3L 20351581..20351733 1101..1253 765 100 Plus
3L 28110227 3L 20349121..20349206 17..102 430 100 Plus
3L 28110227 3L 20352806..20352889 1250..1333 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:09:53 has no hits.

BS06793.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:39 Download gff for BS06793.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RE 1..1317 17..1333 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:27 Download gff for BS06793.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RE 443..1765 10..1333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:23 Download gff for BS06793.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 234..1550 17..1333 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:39 Download gff for BS06793.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RE 443..1765 10..1333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:38 Download gff for BS06793.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 234..1550 17..1333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:38 Download gff for BS06793.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20351583..20351730 1103..1250 100 -> Plus
3L 20352807..20352889 1251..1333 100   Plus
3L 20351094..20351249 749..904 100 -> Plus
3L 20351324..20351521 905..1102 100 -> Plus
3L 20349121..20349206 17..102 100 -> Plus
3L 20350305..20350480 103..278 100 -> Plus
3L 20350559..20351028 279..748 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:23 Download gff for BS06793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20342221..20342306 17..102 100 -> Plus
arm_3L 20343405..20343580 103..278 100 -> Plus
arm_3L 20343659..20344128 279..748 100 -> Plus
arm_3L 20344194..20344349 749..904 100 -> Plus
arm_3L 20344424..20344621 905..1102 100 -> Plus
arm_3L 20344683..20344830 1103..1250 100 -> Plus
arm_3L 20345907..20345989 1251..1333 100   Plus

BS06793.pep Sequence

Translation from 16 to 1332

> BS06793.pep
MSGEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSK
MLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTI
VTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIV
MDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHN
YVRKVAEVATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKV
IKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGK
YCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPE
QEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEG
SQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDDY*

BS06793.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-PG 438 CG5605-PG 1..438 1..438 2246 100 Plus
eRF1-PA 438 CG5605-PA 1..438 1..438 2246 100 Plus
eRF1-PF 438 CG5605-PF 1..438 1..438 2246 100 Plus
eRF1-PE 438 CG5605-PE 1..438 1..438 2246 100 Plus
eRF1-PB 438 CG5605-PB 1..438 1..438 2246 100 Plus