Clone Sequence Records
BS06793.3prime Sequence
868 bp (843 high quality bases) assembled on 2005-12-04
> BS06793.3prime
ATGGTCTAGAAAGCTTCTAGTAATCATCTAGATCGAAGCCATCATTGTCC
AATTCATCGAGCTGCATACTCTGGAAATCCACCTTGTAGCGTAAGATACC
GCCGATTCCACCGAAACCTCGCACGAACTGACTTCCTTCCTGGGACTTAT
CCGTGATAATCTCCAGTGTGGCGCCGAACATTTTGTAGTTGTTTGCCAGC
CATTCCAGCAGCGGCTGAGACTCAATCAGCTCCATTTCTACCCCGCTCTC
CTTGTCAGTGAAGTGCGACTTGTCCTTTTCCTGCTCGGGCGTCAAATGTA
ATACTGTCGTTGACGTCGAGTTGGCATGATTCTTGAGAACATAACGTTGA
ATATCCAGGTTCTCCCAACAAATGAGAGTCTCTACAGAGCCAAGTTCCAG
TGCCCGCAAAGTGTCCTCCACTCCAAAACAGTATTTGCCAGTATCCTGAG
AAATTTCATCAAAGTAGCGACCAATGAGTTTCTTCTCCTGTATGAATTTA
ACGTTCTGCAATGATTCGGCCGCCAGTTCAATGGCCTGGTTAAAACCGTT
TTCCCCACCATACGACACGTCCACCAGCTTGATGACTTTTGATTGCAAAC
GAGGATCGAACATATCAGACTGACTAAGCTCAGTCTTGAAATCCGCACTA
CCAGCCAGGATGAGTCCGGCAATGTTGGGCTTGTCGTTCGTGATGAAGAG
CTGGGTGGCCACCTCGGCGACCTTCCGCACGTAGTTGTGGCGCTTCTCCA
TACGCAGACGGGCGAAACGAAGGGCGGACTGACCACCACGACCGTGCTTC
TTCGGCAGATCGACGGTGAACTTGTGGAGCACCTCGCGCGTGTTGCCCTG
AAGGGTACCGAATAGCGC
BS06793.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5605-PC | 1317 | eRF1-RC | 466..1317 | 868..17 | 4260 | 100 | Minus |
CG5605-PB | 1317 | eRF1-RB | 466..1317 | 868..17 | 4260 | 100 | Minus |
CG5605-PE | 1317 | eRF1-RE | 466..1317 | 868..17 | 4260 | 100 | Minus |
CG5605-PF | 1317 | eRF1-RF | 466..1317 | 868..17 | 4260 | 100 | Minus |
CG5605-PA | 1317 | eRF1-RA | 466..1317 | 868..17 | 4260 | 100 | Minus |
CG5605-PG | 1317 | eRF1-RG | 466..1317 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-RG | 1739 | CG5605-RG | 650..1501 | 868..17 | 4260 | 100 | Minus |
eRF1-RA | 2321 | CG5605-RA | 1232..2083 | 868..17 | 4260 | 100 | Minus |
eRF1-RF | 1788 | CG5605-RF | 699..1550 | 868..17 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20350762..20351028 | 868..602 | 1335 | 100 | Minus |
3L | 28110227 | 3L | 20351322..20351521 | 447..248 | 1000 | 100 | Minus |
3L | 28110227 | 3L | 20351094..20351250 | 601..445 | 785 | 100 | Minus |
3L | 28110227 | 3L | 20351581..20351733 | 249..97 | 765 | 100 | Minus |
3L | 28110227 | 3L | 20352806..20352889 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:44:52 has no hits.
BS06793.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:15 Download gff for
BS06793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-PG | 466..1317 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:11 Download gff for
BS06793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5605-PG | 466..1317 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:26:52 Download gff for
BS06793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RF | 699..1550 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:38 Download gff for
BS06793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RF | 699..1550 | 17..868 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:38 Download gff for
BS06793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20350762..20351028 | 602..868 | 100 | -> | Minus |
3L | 20351094..20351249 | 446..601 | 100 | -> | Minus |
3L | 20351324..20351521 | 248..445 | 100 | -> | Minus |
3L | 20351583..20351730 | 100..247 | 100 | -> | Minus |
3L | 20352807..20352889 | 17..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:26:52 Download gff for
BS06793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20343862..20344128 | 602..868 | 100 | -> | Minus |
arm_3L | 20344194..20344349 | 446..601 | 100 | -> | Minus |
arm_3L | 20344424..20344621 | 248..445 | 100 | -> | Minus |
arm_3L | 20344683..20344830 | 100..247 | 100 | -> | Minus |
arm_3L | 20345907..20345989 | 17..99 | 100 | | Minus |
BS06793.5prime Sequence
863 bp (791 high quality bases) assembled on 2005-12-04
> BS06793.5prime
GAAGTTATCAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATG
TCGAGATCTGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGC
GGCAATGGAACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAAT
CTCGCGCGTCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACA
TCAAGTCGCGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTA
CAGCACAGACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCAT
CTACTGCGGCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACA
TAGACTTTGAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGAC
AACAAGTTCCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAA
ATTTGGATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTC
AGGGCAACACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAG
AAGCACGGTCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTAT
GGAGAAGCGCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGC
TCTTCATCACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGT
AGTGCGGATTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCG
TTTGCAATCAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAA
ACGGTTTTAACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTT
AAATTCATACAGG
BS06793.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5605-PC | 1317 | eRF1-RC | 1..847 | 17..863 | 4235 | 100 | Plus |
CG5605-PB | 1317 | eRF1-RB | 1..847 | 17..863 | 4235 | 100 | Plus |
CG5605-PE | 1317 | eRF1-RE | 1..847 | 17..863 | 4235 | 100 | Plus |
CG5605-PF | 1317 | eRF1-RF | 1..847 | 17..863 | 4235 | 100 | Plus |
CG5605-PA | 1317 | eRF1-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
CG5605-PG | 1317 | eRF1-RG | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-RI | 1873 | CG5605-RI | 211..1057 | 17..863 | 4235 | 100 | Plus |
eRF1-RH | 1806 | CG5605-RH | 211..1057 | 17..863 | 4235 | 100 | Plus |
eRF1-RG | 1739 | CG5605-RG | 185..1031 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20350557..20351028 | 277..748 | 2360 | 100 | Plus |
3L | 28110227 | 3L | 20350304..20350480 | 102..278 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20351094..20351208 | 749..863 | 575 | 100 | Plus |
3L | 28110227 | 3L | 20349121..20349206 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:33:12 has no hits.
BS06793.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:16 Download gff for
BS06793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-PG | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:13 Download gff for
BS06793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5605-PG | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:41:24 Download gff for
BS06793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RG | 249..1101 | 10..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:44 Download gff for
BS06793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RG | 179..1031 | 10..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:44 Download gff for
BS06793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20350305..20350480 | 103..278 | 100 | -> | Plus |
3L | 20350559..20351028 | 279..748 | 100 | -> | Plus |
3L | 20351094..20351208 | 749..863 | 100 | | Plus |
3L | 20349115..20349206 | 10..102 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:41:24 Download gff for
BS06793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20342215..20342306 | 10..102 | 96 | -> | Plus |
arm_3L | 20343405..20343580 | 103..278 | 100 | -> | Plus |
arm_3L | 20343659..20344128 | 279..748 | 100 | -> | Plus |
arm_3L | 20344194..20344308 | 749..863 | 100 | | Plus |
BS06793.complete Sequence
1349 bp (1349 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635619
> BS06793.complete
GAAGTTATCAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATG
TCGAGATCTGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGC
GGCAATGGAACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAAT
CTCGCGCGTCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACA
TCAAGTCGCGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTA
CAGCACAGACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCAT
CTACTGCGGCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACA
TAGACTTTGAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGAC
AACAAGTTCCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAA
ATTTGGATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTC
AGGGCAACACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAG
AAGCACGGTCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTAT
GGAGAAGCGCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGC
TCTTCATCACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGT
AGTGCGGATTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCG
TTTGCAATCAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAA
ACGGTTTTAACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTT
AAATTCATACAGGAGAAGAAACTCATTGGTCGCTACTTTGATGAAATTTC
TCAGGATACTGGCAAATACTGTTTTGGAGTGGAGGACACTTTGCGGGCAC
TGGAACTTGGCTCTGTAGAGACTCTCATTTGTTGGGAGAACCTGGATATT
CAACGTTATGTTCTCAAGAATCATGCCAACTCGACGTCAACGACAGTATT
ACATTTGACGCCCGAGCAGGAAAAGGACAAGTCGCACTTCACTGACAAGG
AGAGCGGGGTAGAAATGGAGCTGATTGAGTCTCAGCCGCTGCTGGAATGG
CTGGCAAACAACTACAAAATGTTCGGCGCCACACTGGAGATTATCACGGA
TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCG
GTATCTTACGCTACAAGGTGGATTTCCAGAGTATGCAGCTCGATGAATTG
GACAATGATGGCTTCGATCTAGATGATTACTAGAAGCTTTCTAGACCAT
BS06793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-RG | 1317 | CG5605-PG | 1..1317 | 17..1333 | 6585 | 100 | Plus |
eRF1-RA | 1317 | CG5605-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
eRF1-RF | 1317 | CG5605-PF | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-RG | 1739 | CG5605-RG | 185..1501 | 17..1333 | 6585 | 100 | Plus |
eRF1-RA | 2321 | CG5605-RA | 767..2083 | 17..1333 | 6585 | 100 | Plus |
eRF1-RF | 1788 | CG5605-RF | 234..1550 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20350557..20351028 | 277..748 | 2360 | 100 | Plus |
3L | 28110227 | 3L | 20351322..20351521 | 903..1102 | 1000 | 100 | Plus |
3L | 28110227 | 3L | 20350304..20350480 | 102..278 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20351094..20351250 | 749..905 | 785 | 100 | Plus |
3L | 28110227 | 3L | 20351581..20351733 | 1101..1253 | 765 | 100 | Plus |
3L | 28110227 | 3L | 20349121..20349206 | 17..102 | 430 | 100 | Plus |
3L | 28110227 | 3L | 20352806..20352889 | 1250..1333 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:09:53 has no hits.
BS06793.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:11:39 Download gff for
BS06793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RE | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:51:27 Download gff for
BS06793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RE | 443..1765 | 10..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:23 Download gff for
BS06793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RF | 234..1550 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:11:39 Download gff for
BS06793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RE | 443..1765 | 10..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:38 Download gff for
BS06793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RF | 234..1550 | 17..1333 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:38 Download gff for
BS06793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20351583..20351730 | 1103..1250 | 100 | -> | Plus |
3L | 20352807..20352889 | 1251..1333 | 100 | | Plus |
3L | 20351094..20351249 | 749..904 | 100 | -> | Plus |
3L | 20351324..20351521 | 905..1102 | 100 | -> | Plus |
3L | 20349121..20349206 | 17..102 | 100 | -> | Plus |
3L | 20350305..20350480 | 103..278 | 100 | -> | Plus |
3L | 20350559..20351028 | 279..748 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:23 Download gff for
BS06793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20342221..20342306 | 17..102 | 100 | -> | Plus |
arm_3L | 20343405..20343580 | 103..278 | 100 | -> | Plus |
arm_3L | 20343659..20344128 | 279..748 | 100 | -> | Plus |
arm_3L | 20344194..20344349 | 749..904 | 100 | -> | Plus |
arm_3L | 20344424..20344621 | 905..1102 | 100 | -> | Plus |
arm_3L | 20344683..20344830 | 1103..1250 | 100 | -> | Plus |
arm_3L | 20345907..20345989 | 1251..1333 | 100 | | Plus |
BS06793.pep Sequence
Translation from 16 to 1332
> BS06793.pep
MSGEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSK
MLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTI
VTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIV
MDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHN
YVRKVAEVATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKV
IKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGK
YCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPE
QEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEG
SQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDDY*
BS06793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-PG | 438 | CG5605-PG | 1..438 | 1..438 | 2246 | 100 | Plus |
eRF1-PA | 438 | CG5605-PA | 1..438 | 1..438 | 2246 | 100 | Plus |
eRF1-PF | 438 | CG5605-PF | 1..438 | 1..438 | 2246 | 100 | Plus |
eRF1-PE | 438 | CG5605-PE | 1..438 | 1..438 | 2246 | 100 | Plus |
eRF1-PB | 438 | CG5605-PB | 1..438 | 1..438 | 2246 | 100 | Plus |