Clone Sequence Records
BS06794.3prime Sequence
926 bp (822 high quality bases) assembled on 2005-12-04
> BS06794.3prime
ATGGTCTAGAAAGCTTCTACACGCAGGTCGAGGATGCGTGCGACACACTG
GCCGCTGACGCCGCAGCTGCAGCCGCCGAGGAGGAAGCCGCCGATGCGGC
CTCCAGGTTGAAGTCCTTGCTGCGGCAGCACATCTCGCAGATGCGCTTCG
TGTCCGGATTGAGGAACGTGCAGAAGCTGCAGCTCCACTCGTTCGGACTG
GTCACAATCAGCTGGGGAGACACATTCGGCGGCTGCTTGGGCACAGCTCC
TGTGCGTTGCCTTGACCCGGTTCCCCGATTGTCCACGACGGCCGTCTTCA
AGGCGGACTTGACCTTCTTAACGCCGGCACTGCTGCTATTGGGCAGAGGA
CTGGGTGCAGGAGCTTGCACCACCTTAGCCTCGCGTCGCCCCGTACCGGA
TTTTTTATCTAGCGTTCGCGCCTTCTCTCCGTTTGTGGGATTCGTGGCCT
CACGGCGCTTCTCCGCCGGAGGAGCTGCACCGCCGTTCGTTATGGACAGC
GAGCCTAGGTCCAAGCTCTGCACCAGCAAGTCCTCGCGGTCACCCAGGTC
CTTTGTGTAGCCCGATCGCTCGAGGTTCTTGAATACATAGTTCCAGGACT
CGAAACTGCCGACACCCTCCTGCACTTTGGGCATGAGAGGCGGCGAGCTA
CTACTGTCCAGGGCCACAAATCCGTCCAGACTAGCCGAGTCGTAACTGTT
CAAGTCCGAAATGGTGGTGGGTATATCACGTTCAGTGCCGGACCTCTTGG
CCGGTGCAGTCCGACTATTCCGCTCCTTCAATTCCTTGTGCATCTTGCGA
TTATTGTCCATGGTGCTTTGCTTTTTCGCTGATCGCGGATGTTTGTCAGT
CGAATTAATGCCACCCGCCTCGGCCCAAGCCCGCATACGGCTGCTCTTCG
GAACGGGCGCGCATAGATGTACATAT
BS06794.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4057-PA | 2394 | tamo-RA | 1507..2394 | 904..17 | 4390 | 99.7 | Minus |
| CG4057-PB | 2394 | tamo-RB | 1507..2394 | 904..17 | 4390 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tamo-RC | 3656 | CG4057-RC | 2077..2987 | 926..17 | 4485 | 99.6 | Minus |
| tamo-RB | 3852 | CG4057-RB | 1767..2677 | 926..17 | 4485 | 99.6 | Minus |
| tamo-RA | 4162 | CG4057-RA | 2077..2987 | 926..17 | 4485 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24127813..24128613 | 17..817 | 4005 | 100 | Plus |
| 2R | 25286936 | 2R | 24128680..24128789 | 818..926 | 455 | 96.4 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:26:39 has no hits.
BS06794.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:17 Download gff for
BS06794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tamo-PB | 1484..2394 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:14 Download gff for
BS06794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4057-PB | 1484..2394 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:24:43 Download gff for
BS06794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tamo-RA | 2077..2987 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:07 Download gff for
BS06794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tamo-RA | 2077..2987 | 17..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:52:07 Download gff for
BS06794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24127813..24128613 | 17..817 | 100 | <- | Plus |
| 2R | 24128680..24128789 | 818..926 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:24:43 Download gff for
BS06794.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20015336..20016136 | 17..817 | 100 | <- | Plus |
| arm_2R | 20016203..20016312 | 818..926 | 96 | | Plus |
BS06794.5prime Sequence
854 bp (853 high quality bases) assembled on 2005-12-04
> BS06794.5prime
GAAGTTATCAGTCGACATGTCGGATTTCGTGCCGCACGACCTCATCCCCG
ATCTGTGGGATGAGATTCTCCGGCGCCACTGGATGTTTCTCGAGACGGAG
GAGAGCATAGAGAAGCTCGAGGAACGCAAGCAGCTGGAGGGCTGCCTGAA
GGAGTTCCTCTGCGTGGTGCAGCACGATCGCAAGTTCTTTCTGCCGGAAA
CTGGGCATGTCCTGCGGAGGTCTGTGCTCGAGCTGCCCGACTTTTCGGCC
CAGAACGCCATCGTAGCCTTCGAGACCATCAGCCAGTATGCCAACAATCT
GTTTACGAAGCCATGGCGAAAGGAGTATCGAACTCTCAAGACCTATTCGG
GATGCTTTCAGCACGACATCCAATCCCGCCTGCTGGACGCCGAACAGCTC
TTCCTGGCCATGGGCTATCGCCGGGCTGCCGAGGACACCTTCGTCCTCGA
GGGTCCCATCTGTCCGGATCAGGTTACGAATGTTTCGCGCGACGCAATGG
CCGCCTACGTGGAGTGCCAGATTATGAAGCACATCTACGCGGGAGTGACG
GCAGCGGGATACGTCTGCACTTGGAAGGACATCCTACAGTTCCGCGAGCG
TTACGTGGGTGGAACTTCCACGACCATCAAGGAGATGGTCAGGCAGCTGA
GTGAGAAACGGGTACGAATGGAGCAGCCACCGATGCAGGAGAATACATAT
AGCAATGTGGTGAGTGCTGCTCCAACTGCCTGCGGCATGCGCAGCAACAA
CGTTGCCCATCATCCCAGCAGTTCCGGCACTTGTGCCCTGCATCCCAATG
GGCTGAACGAGGCGGGTAAGTATCTGCCGCCTTACCCAGCGCCTCCGCCG
CAGC
BS06794.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4057-PA | 2394 | tamo-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
| CG4057-PB | 2394 | tamo-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tamo-RC | 3656 | CG4057-RC | 590..1431 | 13..854 | 4195 | 99.9 | Plus |
| tamo-RB | 3852 | CG4057-RB | 280..1121 | 13..854 | 4195 | 99.9 | Plus |
| tamo-RA | 4162 | CG4057-RA | 590..1431 | 13..854 | 4195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24129435..24129950 | 854..339 | 2580 | 100 | Minus |
| 2R | 25286936 | 2R | 24130014..24130214 | 340..140 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 24130275..24130403 | 141..13 | 630 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:28:45 has no hits.
BS06794.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:52:18 Download gff for
BS06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tamo-PB | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:35:16 Download gff for
BS06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4057-PB | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:15:52 Download gff for
BS06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tamo-RA | 584..1431 | 5..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:14 Download gff for
BS06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tamo-RA | 584..1431 | 5..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:14 Download gff for
BS06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24129435..24129948 | 341..854 | 100 | <- | Minus |
| 2R | 24130014..24130213 | 141..340 | 100 | <- | Minus |
| 2R | 24130276..24130409 | 5..140 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:15:52 Download gff for
BS06794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20016958..20017471 | 341..854 | 100 | <- | Minus |
| arm_2R | 20017537..20017736 | 141..340 | 100 | <- | Minus |
| arm_2R | 20017799..20017932 | 5..140 | 96 | | Minus |
BS06794.complete Sequence
2426 bp assembled on 2010-05-10
GenBank Submission: KX806347
> BS06794.complete
GAAGTTATCAGTCGACATGTCGGATTTCGTGCCGCACGACCTCATCCCCG
ATCTGTGGGATGAGATTCTCCGGCGCCACTGGATGTTTCTCGAGACGGAG
GAGAGCATAGAGAAGCTCGAGGAACGCAAGCAGCTGGAGGGCTGCCTGAA
GGAGTTCCTCTGCGTGGTGCAGCACGATCGCAAGTTCTTTCTGCCGGAAA
CTGGGCATGTCCTGCGGAGGTCTGTGCTCGAGCTGCCCGACTTTTCGGCC
CAGAACGCCATCGTAGCCTTCGAGACCATCAGCCAGTATGCCAACAATCT
GTTTACGAAGCCATGGCGAAAGGAGTATCGAACTCTCAAGACCTATTCGG
GATGCTTTCAGCACGACATCCAATCCCGCCTGCTGGACGCCGAACAGCTC
TTCCTGGCCATGGGCTATCGCCGGGCTGCCGAGGACACCTTCGTCCTCGA
GGGTCCCATCTGTCCGGATCAGGTTACGAATGTTTCGCGCGACGCAATGG
CCGCCTACGTGGAGTGCCAGATTATGAAGCACATCTACGCGGGAGTGACG
GCAGCGGGATACGTCTGCACTTGGAAGGACATCCTACAGTTCCGCGAGCG
TTACGTGGGTGGAACTTCCACGACCATCAAGGAGATGGTCAGGCAGCTGA
GTGAGAAACGGGTACGAATGGAGCAGCCACCGATGCAGGAGAATACATAT
AGCAATGTGGTGAGTGCTGCTCCAACTGCCTGCGGCATGCGCAGCAACAA
CGTTGCCCATCATCCCAGCAGTTCCGGCACTTGTGCCCTGCATCCCAATG
GGCTGAACGAGGCGGGTAAGTATCTGCCGCCTTACCCAGCGCCTCCGCCG
CAGCAACCGCACCTGCCTGGTCCGCTGATGACGCATTCTCGCAGCCTGGA
TCACTACCAGGAACCGCAGGCCCATCTGCCTCACCGTCACTCCTTCGATC
AGCAGCTCCAACAGCAGTGCCAGCTGCCGCACGTCTACGAGGCGCCCTAT
GACTGCTTAGATGGCCTGAGCATGGGCAGCAGTGCGTCCTACGCTGCCGT
GACTGGAGCCTACAATGCACCGGGAAACCGCTATCCGCTGCCGTACAACA
TCTCCAGCCAGCTGAATGCCCCGTATGCGTCGCCCGCCGACTTCTATGGC
AATGGACAGCACACCAACATGTACGCCACGCTGGGAAAGACGGGCCCAGC
CCACAGCTGCGATTTGCACCGTCGCCAGCCGAACACTTCTGCTGCTGCCG
CTGCTGCCTTGGCGGCTATGCAGCACCGTCAGAGCACCTATCCGCCGGAT
CACCACCTCATCGACTTTGACGAGCGAGCGCATCTGACCCAGCATGACTT
TGGGACGCATGACTACGATCCGCAGTATGCCGAGCTGAGAGGTCAGGTGC
AGCCTAGCATGCGGGGGAATCCGGTAGCCATGTATGCCACCTACGGGGGC
TACGACCTGCCCACCACGCTACCGCAAGCGCCGCCGCCGACCGGCCAGGA
TATGTACATCTATGCGCGGCCGGTTCCGAAGAGCAGCCGTATGCGGGCTT
TGGCCGAGGCGGGTGGCATTAATTCGACTGACAAACATCCGCGATCAGCG
GAAAAGCAAAGCACCATGGACAATAATCGCAAGATGCACAAGGAATTGAA
GGAGCGGAATAGTCGGACTGCACCGGCCAAGAGGTCCGGCACTGAACGTG
ATATACCCACCACCATTTCGGACTTGAACAGTTACGACTCGGCTAGTCTG
GACGGATTTGTGGCCCTGGACAGTAGTAGCTCGCCGCCTCTCATGCCCAA
AGTGCAGGAGGGTGTCGGCAGTTTCGAGTCCTGGAACTATGTATTCAAGA
ACCTCGAGCGATCGGGCTACACAAAGGACCTGGGTGACCGCGAGGACTTG
CTGGTGCAGAGCTTGGACCTAGGCTCGCTGTCCATAACGAACGGCGGTGC
AGCTCCTCCGGCGGAGAAGCGCCGTGAGGCCACGAATCCCACAAACGGAG
AGAAGGCGCGAACGCTAGATAAAAAATCCGGTACGGGGCGACGCGAGGCT
AAGGTGGTGCAAGCTCCTGCACCCAGTCCTCTGCCCAATAGCAGCAGTGC
CGGCGTTAAGAAGGTCAAGTCCGCCTTGAAGACGGCCGTCGTGGACAATC
GGGGAACCGGGTCAAGGCAACGCACAGGAGCTGTGCCCAAGCAGCCGCCG
AATGTGTCTCCCCAGCTGATTGTGACCAGTCCGAACGAGTGGAGCTGCAG
CTTCTGCACGTTCCTCAATCCGGACACGAAGCGCATCTGCGAGATGTGCT
GCCGCAGCAAGGACTTCAACCTGGAGGCCGCATCGGCGGCTTCCTCCTCG
GCGGCTGCAGCTGCGGCGTCAGCGGCCAGTGTGTCGCACGCATCCTCGAC
CTGCGTGTAGAAGCTTTCTAGACCAT
BS06794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tamo-RC | 2394 | CG4057-PC | 1..2394 | 17..2410 | 11970 | 100 | Plus |
| tamo-RB | 2394 | CG4057-PB | 1..2394 | 17..2410 | 11970 | 100 | Plus |
| tamo-RA | 2394 | CG4057-PA | 1..2394 | 17..2410 | 11970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tamo-RC | 3656 | CG4057-RC | 590..2987 | 13..2410 | 11975 | 100 | Plus |
| tamo-RB | 3852 | CG4057-RB | 280..2677 | 13..2410 | 11975 | 100 | Plus |
| tamo-RA | 4162 | CG4057-RA | 590..2987 | 13..2410 | 11975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24128680..24129950 | 1609..339 | 6355 | 100 | Minus |
| 2R | 25286936 | 2R | 24127813..24128613 | 2410..1610 | 4005 | 100 | Minus |
| 2R | 25286936 | 2R | 24130014..24130214 | 340..140 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 24130275..24130403 | 141..13 | 630 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:42:45 has no hits.
BS06794.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:02 Download gff for
BS06794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tamo-RB | 284..2677 | 17..2410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:41 Download gff for
BS06794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tamo-RA | 594..2987 | 17..2410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:34 Download gff for
BS06794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tamo-RA | 594..2987 | 17..2410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:34 Download gff for
BS06794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24127813..24128613 | 1610..2410 | 100 | <- | Minus |
| 2R | 24128680..24129948 | 341..1609 | 100 | <- | Minus |
| 2R | 24130014..24130213 | 141..340 | 100 | <- | Minus |
| 2R | 24130276..24130399 | 17..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:41 Download gff for
BS06794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20015336..20016136 | 1610..2410 | 100 | <- | Minus |
| arm_2R | 20016203..20017471 | 341..1609 | 100 | <- | Minus |
| arm_2R | 20017537..20017736 | 141..340 | 100 | <- | Minus |
| arm_2R | 20017799..20017922 | 17..140 | 100 | | Minus |
BS06794.pep Sequence
Translation from 16 to 2409
> BS06794.pep
MSDFVPHDLIPDLWDEILRRHWMFLETEESIEKLEERKQLEGCLKEFLCV
VQHDRKFFLPETGHVLRRSVLELPDFSAQNAIVAFETISQYANNLFTKPW
RKEYRTLKTYSGCFQHDIQSRLLDAEQLFLAMGYRRAAEDTFVLEGPICP
DQVTNVSRDAMAAYVECQIMKHIYAGVTAAGYVCTWKDILQFRERYVGGT
STTIKEMVRQLSEKRVRMEQPPMQENTYSNVVSAAPTACGMRSNNVAHHP
SSSGTCALHPNGLNEAGKYLPPYPAPPPQQPHLPGPLMTHSRSLDHYQEP
QAHLPHRHSFDQQLQQQCQLPHVYEAPYDCLDGLSMGSSASYAAVTGAYN
APGNRYPLPYNISSQLNAPYASPADFYGNGQHTNMYATLGKTGPAHSCDL
HRRQPNTSAAAAAALAAMQHRQSTYPPDHHLIDFDERAHLTQHDFGTHDY
DPQYAELRGQVQPSMRGNPVAMYATYGGYDLPTTLPQAPPPTGQDMYIYA
RPVPKSSRMRALAEAGGINSTDKHPRSAEKQSTMDNNRKMHKELKERNSR
TAPAKRSGTERDIPTTISDLNSYDSASLDGFVALDSSSSPPLMPKVQEGV
GSFESWNYVFKNLERSGYTKDLGDREDLLVQSLDLGSLSITNGGAAPPAE
KRREATNPTNGEKARTLDKKSGTGRREAKVVQAPAPSPLPNSSSAGVKKV
KSALKTAVVDNRGTGSRQRTGAVPKQPPNVSPQLIVTSPNEWSCSFCTFL
NPDTKRICEMCCRSKDFNLEAASAASSSAAAAAASAASVSHASSTCV*
BS06794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tamo-PC | 797 | CG4057-PC | 1..797 | 1..797 | 4234 | 100 | Plus |
| tamo-PB | 797 | CG4057-PB | 1..797 | 1..797 | 4234 | 100 | Plus |
| tamo-PA | 797 | CG4057-PA | 1..797 | 1..797 | 4234 | 100 | Plus |
